Wall clock time and date at job start Tue Mar 31 2020 01:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33822 * 122.45267 * 2 1 4 4 S 1.70616 * 110.95300 * 180.25143 * 3 2 1 5 5 C 1.75838 * 91.56662 * 359.72866 * 4 3 2 6 6 C 1.46574 * 125.46215 * 179.97438 * 5 4 3 7 7 O 1.21696 * 120.00361 * 180.02562 * 6 5 4 8 8 N 1.34786 * 119.99790 * 0.02630 * 6 5 4 9 9 C 1.46498 * 119.99873 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47143 * 180.02562 * 9 8 6 11 11 H 1.09000 * 112.96288 * 53.31863 * 10 9 8 12 12 C 1.53942 * 113.76964 * 185.00218 * 10 9 8 13 13 C 1.53945 * 86.29123 * 137.90993 * 12 10 9 14 14 N 1.47579 * 113.76758 * 281.49685 * 10 9 8 15 15 C 1.36937 * 134.49627 * 41.05680 * 14 10 9 16 16 H 1.07998 * 119.99701 * 353.49071 * 15 14 10 17 17 C 1.38813 * 120.00401 * 173.48332 * 15 14 10 18 18 N 1.31619 * 119.99887 * 5.07317 * 17 15 14 19 19 Si 1.86789 * 120.00234 * 185.07160 * 17 15 14 20 20 H 1.48503 * 109.47240 * 94.98923 * 19 17 15 21 21 H 1.48498 * 109.47297 * 214.98962 * 19 17 15 22 22 H 1.48505 * 109.47485 * 334.99011 * 19 17 15 23 23 C 1.36651 * 109.07973 * 0.02562 * 5 4 3 24 24 H 1.08999 * 109.46885 * 270.25686 * 1 2 3 25 25 H 1.08997 * 109.46708 * 30.24679 * 1 2 3 26 26 H 1.08998 * 109.47356 * 150.25330 * 1 2 3 27 27 H 1.07994 * 124.51963 * 359.94536 * 3 2 1 28 28 H 0.96993 * 119.99966 * 359.97438 * 8 6 5 29 29 H 1.08996 * 109.47335 * 300.00394 * 9 8 6 30 30 H 1.09002 * 109.46897 * 60.00219 * 9 8 6 31 31 H 1.09005 * 113.74269 * 252.25462 * 12 10 9 32 32 H 1.08999 * 113.74238 * 23.45591 * 12 10 9 33 33 H 1.08998 * 113.77328 * 90.69139 * 13 12 10 34 34 H 1.08999 * 113.76805 * 221.98264 * 13 12 10 35 35 H 0.96995 * 120.00267 * 179.97438 * 18 17 15 36 36 H 1.07999 * 123.35207 * 180.02562 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2251 1.1292 0.0000 4 16 3.8970 0.7891 -0.0070 5 6 3.5937 -0.9429 -0.0016 6 6 4.6229 -1.9865 -0.0046 7 8 4.3000 -3.1598 -0.0008 8 7 5.9272 -1.6466 -0.0114 9 6 6.9560 -2.6896 -0.0138 10 6 8.3411 -2.0397 -0.0211 11 1 8.4749 -1.3147 0.7818 12 6 9.4984 -3.0470 -0.1469 13 6 10.1312 -2.0450 -1.1295 14 7 8.7595 -1.5460 -1.3474 15 6 8.1284 -0.8889 -2.3697 16 1 7.0625 -0.7204 -2.3268 17 6 8.8588 -0.4391 -3.4612 18 7 10.1383 -0.7305 -3.5620 19 14 8.0256 0.5796 -4.7868 20 1 8.2305 2.0230 -4.5038 21 1 8.6127 0.2463 -6.1094 22 1 6.5713 0.2796 -4.8009 23 6 2.2445 -1.1601 0.0046 24 1 -0.3633 0.0046 1.0277 25 1 -0.3632 0.8878 -0.5177 26 1 -0.3634 -0.8922 -0.5099 27 1 1.8026 2.1231 -0.0008 28 1 6.1846 -0.7114 -0.0148 29 1 6.8494 -3.3070 0.8781 30 1 6.8411 -3.3111 -0.9018 31 1 10.0678 -3.1785 0.7733 32 1 9.2095 -3.9921 -0.6066 33 1 10.7918 -1.3203 -0.6534 34 1 10.5754 -2.5123 -2.0083 35 1 10.6486 -0.4166 -4.3248 36 1 1.8018 -2.1452 0.0092 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038229596.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:11 Heat of formation + Delta-G solvation = 24.038468 kcal Electronic energy + Delta-G solvation = -19266.014443 eV Core-core repulsion = 16263.620875 eV Total energy + Delta-G solvation = -3002.393568 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.94417 -39.70377 -38.88204 -35.61365 -34.22365 -32.14817 -29.94379 -29.45798 -28.56136 -25.50431 -25.29231 -23.47269 -21.79976 -20.89425 -19.96096 -19.55337 -18.41399 -17.37812 -17.14515 -16.88932 -16.31479 -15.96362 -15.64732 -15.12051 -14.93419 -14.63524 -14.51115 -14.06951 -13.64938 -13.34572 -13.17871 -12.94847 -12.88073 -12.79471 -12.71222 -12.58438 -12.29472 -11.91816 -11.83904 -11.55591 -11.43800 -11.04866 -10.83564 -10.23417 -9.82720 -9.38172 -8.87382 -7.88659 -5.19279 -0.51819 0.46649 0.93481 1.33664 1.43250 1.43971 1.52178 2.04859 2.16187 2.47181 3.29755 3.39251 3.72641 3.98440 4.04373 4.10371 4.19436 4.33211 4.38072 4.59738 4.67893 4.69746 4.83651 4.87414 4.91329 5.05879 5.06421 5.07970 5.31863 5.35490 5.38225 5.47739 5.60852 5.73677 5.97563 6.38891 6.95523 7.03824 7.64833 8.60288 9.28803 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.017131 B = 0.005396 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.089307 B = 5187.341770 C = 6331.439000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.128 4.128 3 C -0.224 4.224 4 S 0.215 5.785 5 C -0.296 4.296 6 C 0.583 3.417 7 O -0.577 6.577 8 N -0.709 5.709 9 C 0.131 3.869 10 C 0.130 3.870 11 H 0.071 0.929 12 C -0.129 4.129 13 C 0.154 3.846 14 N -0.630 5.630 15 C -0.215 4.215 16 H 0.080 0.920 17 C -0.065 4.065 18 N -0.951 5.951 19 Si 0.960 3.040 20 H -0.284 1.284 21 H -0.298 1.298 22 H -0.272 1.272 23 C -0.056 4.056 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.200 0.800 28 H 0.404 0.596 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.024 0.976 34 H 0.035 0.965 35 H 0.246 0.754 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.070 3.697 10.992 19.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C -0.362 4.362 4 S 0.484 5.516 5 C -0.416 4.416 6 C 0.371 3.629 7 O -0.460 6.460 8 N -0.358 5.358 9 C 0.007 3.993 10 C 0.023 3.977 11 H 0.089 0.911 12 C -0.168 4.168 13 C 0.029 3.971 14 N -0.356 5.356 15 C -0.344 4.344 16 H 0.098 0.902 17 C -0.258 4.258 18 N -0.600 5.600 19 Si 0.790 3.210 20 H -0.211 1.211 21 H -0.225 1.225 22 H -0.197 1.197 23 C -0.090 4.090 24 H 0.100 0.900 25 H 0.101 0.899 26 H 0.089 0.911 27 H 0.217 0.783 28 H 0.239 0.761 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.042 0.958 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.944 3.948 10.690 18.008 hybrid contribution -1.048 0.137 -1.160 1.569 sum -14.992 4.085 9.530 18.228 Atomic orbital electron populations 1.20568 0.87108 1.03809 1.03416 1.19026 0.99487 0.90652 1.04884 1.25578 0.97631 1.04672 1.08304 1.83247 1.05086 0.96273 1.66991 1.24554 0.98010 0.98271 1.20765 1.17323 0.82280 0.87501 0.75785 1.90753 1.82367 1.19842 1.52992 1.45849 1.05152 1.11070 1.73706 1.21655 0.86350 0.89969 1.01338 1.22697 0.92219 0.94451 0.88284 0.91144 1.23575 0.96140 0.97173 0.99866 1.22107 0.87608 0.92251 0.95169 1.46406 1.08427 1.67928 1.12852 1.19237 0.91769 1.27060 0.96316 0.90224 1.25494 0.96424 1.02816 1.01115 1.70001 1.07915 1.50748 1.31328 0.85316 0.77902 0.79101 0.78708 1.21058 1.22522 1.19735 1.20866 0.90722 1.00856 0.96574 0.89968 0.89935 0.91064 0.78338 0.76088 0.89637 0.93578 0.88601 0.90196 0.95844 0.94615 0.94492 0.83274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.18 10.13 71.23 0.72 -0.46 16 2 C -0.13 -2.57 5.78 -21.05 -0.12 -2.69 16 3 C -0.22 -4.17 10.67 66.82 0.71 -3.45 16 4 S 0.21 5.09 22.16 -56.49 -1.25 3.84 16 5 C -0.30 -8.89 6.45 24.07 0.16 -8.73 16 6 C 0.58 21.23 7.78 86.42 0.67 21.90 16 7 O -0.58 -24.38 16.84 -4.34 -0.07 -24.46 16 8 N -0.71 -24.92 5.51 -467.18 -2.57 -27.49 16 9 C 0.13 4.71 5.54 86.38 0.48 5.19 16 10 C 0.13 4.79 4.33 45.09 0.20 4.99 16 11 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 12 C -0.13 -4.42 7.86 31.25 0.25 -4.17 16 13 C 0.15 7.05 7.42 86.48 0.64 7.69 16 14 N -0.63 -30.62 3.57 -694.15 -2.48 -33.10 16 15 C -0.22 -11.65 10.50 84.03 0.88 -10.77 16 16 H 0.08 4.18 7.79 -2.91 -0.02 4.16 16 17 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 18 N -0.95 -57.08 11.51 21.65 0.25 -56.83 16 19 Si 0.96 45.80 29.56 68.60 2.03 47.83 16 20 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 22 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 23 C -0.06 -1.45 9.80 21.72 0.21 -1.24 16 24 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.08 0.83 8.12 -2.39 -0.02 0.81 16 26 H 0.07 0.91 8.13 -2.39 -0.02 0.89 16 27 H 0.20 2.34 8.06 -2.91 -0.02 2.32 16 28 H 0.40 13.53 7.59 -92.71 -0.70 12.83 16 29 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 30 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.10 2.56 8.14 -2.38 -0.02 2.54 16 32 H 0.08 2.72 8.10 -2.39 -0.02 2.70 16 33 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.04 1.86 7.36 -2.39 -0.02 1.84 16 35 H 0.25 14.48 8.31 -92.71 -0.77 13.70 16 36 H 0.15 3.84 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -70.21 322.59 1.55 -68.66 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.38 Total: 16.53 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 5.26 Total: 5.02 kcal Atomic # 7 Polarization: -112.61 SS G_CDS: -4.80 Total: -117.42 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.07 Total: -24.46 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Atomic # 16 Polarization: 5.09 SS G_CDS: -1.25 Total: 3.84 kcal Total: -70.21 1.55 -68.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038229596.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.699 kcal (2) G-P(sol) polarization free energy of solvation -70.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds