Wall clock time and date at job start Tue Mar 31 2020 01:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32765 * 124.71172 * 2 1 4 4 C 1.44423 * 113.08393 * 180.02562 * 3 2 1 5 5 C 1.47187 * 123.46439 * 179.97438 * 4 3 2 6 6 O 1.21642 * 119.99934 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00185 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00055 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47404 * 179.97438 * 8 7 5 10 10 H 1.08998 * 112.77601 * 303.72538 * 9 8 7 11 11 C 1.53495 * 113.47041 * 172.93944 * 9 8 7 12 12 C 1.53497 * 83.34454 * 219.15595 * 11 9 8 13 13 N 1.47066 * 113.46479 * 74.50242 * 9 8 7 14 14 C 1.36937 * 136.06113 * 321.64192 * 13 9 8 15 15 H 1.07995 * 120.00001 * 0.02562 * 14 13 9 16 16 C 1.38817 * 120.00320 * 179.97438 * 14 13 9 17 17 N 1.31620 * 119.99557 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99975 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47441 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47001 * 120.00359 * 18 16 14 21 21 H 1.48499 * 109.47209 * 240.00202 * 18 16 14 22 22 C 1.36011 * 113.07830 * 0.24555 * 4 3 2 23 23 S 1.70450 * 110.81386 * 359.62395 * 22 4 3 24 24 H 1.09000 * 109.47447 * 90.00349 * 1 2 3 25 25 H 1.08999 * 109.47276 * 210.00281 * 1 2 3 26 26 H 1.08999 * 109.47368 * 330.00017 * 1 2 3 27 27 H 1.08004 * 123.46022 * 0.05629 * 3 2 1 28 28 H 0.96999 * 120.00230 * 359.97438 * 7 5 4 29 29 H 1.08998 * 109.47316 * 59.99433 * 8 7 5 30 30 H 1.09006 * 109.47204 * 299.99927 * 8 7 5 31 31 H 1.09006 * 114.20556 * 332.74032 * 11 9 8 32 32 H 1.08994 * 114.20812 * 105.36675 * 11 9 8 33 33 H 1.09007 * 113.46266 * 271.28548 * 12 11 9 34 34 H 1.08993 * 113.46849 * 140.85107 * 12 11 9 35 35 H 0.96999 * 119.99537 * 179.97438 * 17 16 14 36 36 H 1.08001 * 124.59244 * 179.73784 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2630 1.0914 0.0000 4 6 3.6776 0.8003 -0.0006 5 6 4.7201 1.8394 -0.0013 6 8 4.4071 3.0148 -0.0018 7 7 6.0213 1.4885 -0.0023 8 6 7.0589 2.5228 -0.0035 9 6 8.4385 1.8613 -0.0039 10 1 8.5782 1.1762 0.8323 11 6 9.5937 2.8568 -0.1783 12 6 10.1840 1.7439 -1.0554 13 7 8.8099 1.2823 -1.3038 14 6 8.1627 0.6056 -2.3030 15 1 7.1082 0.3902 -2.2140 16 6 8.8617 0.1974 -3.4307 17 7 10.1468 0.4604 -3.5393 18 14 7.9785 -0.7250 -4.7939 19 1 6.5481 -0.8927 -4.4321 20 1 8.0815 0.0448 -6.0597 21 1 8.6037 -2.0598 -4.9741 22 6 3.9476 -0.5328 -0.0064 23 16 2.5063 -1.4427 -0.0007 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.8614 2.0940 0.0009 28 1 6.2709 0.5512 -0.0023 29 1 6.9542 3.1435 0.8863 30 1 6.9527 3.1430 -0.8937 31 1 9.3257 3.7614 -0.7243 32 1 10.1545 3.0551 0.7351 33 1 10.7887 1.0276 -0.4991 34 1 10.6853 2.1155 -1.9490 35 1 10.6353 0.1748 -4.3271 36 1 4.9407 -0.9572 -0.0119 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038819418.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:01 Heat of formation + Delta-G solvation = 46.200793 kcal Electronic energy + Delta-G solvation = -19311.225265 eV Core-core repulsion = 16309.792727 eV Total energy + Delta-G solvation = -3001.432538 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.64068 -38.21650 -36.91272 -34.10495 -32.34258 -32.06908 -28.22169 -27.82163 -26.56746 -24.41217 -23.49765 -21.89637 -20.60102 -19.45688 -18.95088 -17.55958 -16.98819 -16.45848 -15.33180 -15.29974 -14.65087 -14.50731 -14.04390 -13.86163 -13.67907 -13.44830 -13.05318 -12.81202 -12.40488 -12.18671 -12.12652 -11.81291 -11.54485 -11.13870 -11.05350 -10.99796 -10.80244 -10.57457 -10.01390 -9.85049 -9.67129 -9.23290 -8.86458 -8.84668 -8.64916 -8.35359 -6.92970 -5.80194 -3.12846 0.77489 1.45901 1.86810 2.04767 3.35154 3.40973 3.43299 3.53315 3.65825 4.40347 4.63986 5.01648 5.05770 5.16354 5.28118 5.32323 5.35561 5.40582 5.55002 5.67132 5.72877 5.87809 5.89728 6.03706 6.09996 6.28052 6.34317 6.39137 6.58140 6.70163 6.88108 7.20167 7.36992 7.55397 7.89857 7.94485 8.55827 8.99734 9.67006 10.59746 11.37006 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.016760 B = 0.005214 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.286295 B = 5368.474721 C = 6543.168219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.209 4.209 3 C -0.089 4.089 4 C -0.145 4.145 5 C 0.572 3.428 6 O -0.549 6.549 7 N -0.707 5.707 8 C 0.122 3.878 9 C 0.126 3.874 10 H 0.048 0.952 11 C -0.160 4.160 12 C 0.151 3.849 13 N -0.601 5.601 14 C -0.214 4.214 15 H 0.080 0.920 16 C -0.006 4.006 17 N -0.917 5.917 18 Si 0.907 3.093 19 H -0.280 1.280 20 H -0.289 1.289 21 H -0.290 1.290 22 C -0.209 4.209 23 S 0.175 5.825 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.152 0.848 28 H 0.401 0.599 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.025 0.975 34 H 0.072 0.928 35 H 0.253 0.747 36 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.692 -2.429 9.538 16.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.325 4.325 3 C -0.118 4.118 4 C -0.163 4.163 5 C 0.357 3.643 6 O -0.428 6.428 7 N -0.356 5.356 8 C -0.002 4.002 9 C 0.018 3.982 10 H 0.065 0.935 11 C -0.199 4.199 12 C 0.026 3.974 13 N -0.327 5.327 14 C -0.342 4.342 15 H 0.098 0.902 16 C -0.203 4.203 17 N -0.564 5.564 18 Si 0.737 3.263 19 H -0.205 1.205 20 H -0.216 1.216 21 H -0.217 1.217 22 C -0.347 4.347 23 S 0.441 5.559 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.169 0.831 28 H 0.236 0.764 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.043 0.957 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -14.225 -3.308 9.199 17.260 hybrid contribution 0.329 0.362 -0.843 0.975 sum -13.896 -2.946 8.356 16.480 Atomic orbital electron populations 1.20311 0.87552 1.03095 1.02823 1.24341 1.00379 0.96116 1.11684 1.21017 0.90460 0.99613 1.00673 1.20354 0.94440 0.92557 1.08912 1.17584 0.82271 0.87750 0.76704 1.90749 1.82386 1.18643 1.51064 1.45832 1.05157 1.11073 1.73566 1.21836 0.86603 0.90335 1.01461 1.22429 0.91452 0.93541 0.90731 0.93469 1.23653 0.98002 0.98346 0.99941 1.22028 0.88565 0.90544 0.96278 1.45698 1.05953 1.66525 1.14560 1.18887 0.92417 1.28437 0.94428 0.90220 1.24768 0.95840 1.01396 0.98303 1.69837 1.06829 1.50767 1.28965 0.86125 0.78570 0.79270 0.82313 1.20471 1.21638 1.21729 1.25686 1.04734 0.97606 1.06724 1.82912 0.93913 1.08594 1.70469 0.90749 0.91351 0.90499 0.83083 0.76398 0.92120 0.90934 0.90174 0.92303 0.95750 0.90941 0.93711 0.81085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.35 36.01 0.37 -0.25 16 2 C -0.21 -2.35 6.44 -36.18 -0.23 -2.58 16 3 C -0.09 -1.22 9.95 -39.02 -0.39 -1.60 16 4 C -0.14 -2.24 5.98 -104.63 -0.63 -2.87 16 5 C 0.57 10.48 7.79 -12.63 -0.10 10.39 16 6 O -0.55 -11.62 16.80 5.24 0.09 -11.53 16 7 N -0.71 -12.57 5.31 -61.46 -0.33 -12.89 16 8 C 0.12 2.26 5.52 -4.04 -0.02 2.24 16 9 C 0.13 2.43 4.10 -72.40 -0.30 2.14 16 10 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 11 C -0.16 -2.92 8.03 -26.22 -0.21 -3.13 16 12 C 0.15 3.45 7.40 -8.51 -0.06 3.39 16 13 N -0.60 -14.61 3.65 -177.00 -0.65 -15.25 16 14 C -0.21 -5.74 10.55 -15.06 -0.16 -5.90 16 15 H 0.08 2.06 7.50 -52.49 -0.39 1.67 16 16 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 17 N -0.92 -26.85 11.51 55.49 0.64 -26.21 16 18 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 C -0.21 -2.78 10.38 29.93 0.31 -2.47 16 23 S 0.18 1.90 23.00 -107.50 -2.47 -0.57 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.15 2.01 8.06 -52.48 -0.42 1.59 16 28 H 0.40 6.73 6.86 -40.82 -0.28 6.45 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 31 H 0.08 1.46 8.12 -51.93 -0.42 1.03 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 1.85 7.12 -51.93 -0.37 1.48 16 35 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.17 2.09 7.01 -52.49 -0.37 1.72 16 LS Contribution 321.23 15.07 4.84 4.84 Total: -1.00 -32.13 321.23 -9.18 -41.32 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -4.77 Total: 4.24 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -1.51 Total: -0.92 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.33 Total: -54.36 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -2.47 Total: -0.57 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.13 -9.18 -41.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038819418.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.517 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds