Wall clock time and date at job start Tue Mar 31 2020 01:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32765 * 124.71172 * 2 1 4 4 C 1.44423 * 113.08393 * 180.02562 * 3 2 1 5 5 C 1.47187 * 123.46439 * 179.97438 * 4 3 2 6 6 O 1.21642 * 119.99934 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00185 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00055 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47404 * 179.97438 * 8 7 5 10 10 H 1.08998 * 112.77601 * 303.72538 * 9 8 7 11 11 C 1.53495 * 113.47041 * 172.93944 * 9 8 7 12 12 C 1.53497 * 83.34454 * 219.15595 * 11 9 8 13 13 N 1.47066 * 113.46479 * 74.50242 * 9 8 7 14 14 C 1.36937 * 136.06113 * 321.64192 * 13 9 8 15 15 H 1.07995 * 120.00001 * 0.02562 * 14 13 9 16 16 C 1.38817 * 120.00320 * 179.97438 * 14 13 9 17 17 N 1.31620 * 119.99557 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99975 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47441 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47001 * 120.00359 * 18 16 14 21 21 H 1.48499 * 109.47209 * 240.00202 * 18 16 14 22 22 C 1.36011 * 113.07830 * 0.24555 * 4 3 2 23 23 S 1.70450 * 110.81386 * 359.62395 * 22 4 3 24 24 H 1.09000 * 109.47447 * 90.00349 * 1 2 3 25 25 H 1.08999 * 109.47276 * 210.00281 * 1 2 3 26 26 H 1.08999 * 109.47368 * 330.00017 * 1 2 3 27 27 H 1.08004 * 123.46022 * 0.05629 * 3 2 1 28 28 H 0.96999 * 120.00230 * 359.97438 * 7 5 4 29 29 H 1.08998 * 109.47316 * 59.99433 * 8 7 5 30 30 H 1.09006 * 109.47204 * 299.99927 * 8 7 5 31 31 H 1.09006 * 114.20556 * 332.74032 * 11 9 8 32 32 H 1.08994 * 114.20812 * 105.36675 * 11 9 8 33 33 H 1.09007 * 113.46266 * 271.28548 * 12 11 9 34 34 H 1.08993 * 113.46849 * 140.85107 * 12 11 9 35 35 H 0.96999 * 119.99537 * 179.97438 * 17 16 14 36 36 H 1.08001 * 124.59244 * 179.73784 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2630 1.0914 0.0000 4 6 3.6776 0.8003 -0.0006 5 6 4.7201 1.8394 -0.0013 6 8 4.4071 3.0148 -0.0018 7 7 6.0213 1.4885 -0.0023 8 6 7.0589 2.5228 -0.0035 9 6 8.4385 1.8613 -0.0039 10 1 8.5782 1.1762 0.8323 11 6 9.5937 2.8568 -0.1783 12 6 10.1840 1.7439 -1.0554 13 7 8.8099 1.2823 -1.3038 14 6 8.1627 0.6056 -2.3030 15 1 7.1082 0.3902 -2.2140 16 6 8.8617 0.1974 -3.4307 17 7 10.1468 0.4604 -3.5393 18 14 7.9785 -0.7250 -4.7939 19 1 6.5481 -0.8927 -4.4321 20 1 8.0815 0.0448 -6.0597 21 1 8.6037 -2.0598 -4.9741 22 6 3.9476 -0.5328 -0.0064 23 16 2.5063 -1.4427 -0.0007 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.8614 2.0940 0.0009 28 1 6.2709 0.5512 -0.0023 29 1 6.9542 3.1435 0.8863 30 1 6.9527 3.1430 -0.8937 31 1 9.3257 3.7614 -0.7243 32 1 10.1545 3.0551 0.7351 33 1 10.7887 1.0276 -0.4991 34 1 10.6853 2.1155 -1.9490 35 1 10.6353 0.1748 -4.3271 36 1 4.9407 -0.9572 -0.0119 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038819418.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:01 Heat of formation + Delta-G solvation = 25.410383 kcal Electronic energy + Delta-G solvation = -19312.126804 eV Core-core repulsion = 16309.792727 eV Total energy + Delta-G solvation = -3002.334078 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.03723 -39.83182 -38.03480 -35.60747 -34.27354 -33.06432 -30.01134 -29.38998 -27.50803 -25.64761 -25.40781 -23.42402 -21.81399 -21.05517 -20.25640 -18.87826 -18.35348 -17.91148 -17.12790 -16.69168 -16.24988 -15.85913 -15.65918 -15.03550 -14.87380 -14.66879 -14.54252 -13.98297 -13.67277 -13.38829 -13.31471 -13.01149 -12.95247 -12.92267 -12.71792 -12.59546 -12.31388 -11.98187 -11.84774 -11.63557 -11.26566 -10.90695 -10.81089 -10.12323 -9.77939 -9.35433 -8.90506 -7.89062 -5.20693 -0.26316 0.54674 0.89840 0.95170 1.41477 1.43627 1.51820 2.17395 2.33951 2.45687 3.33228 3.42555 3.73006 3.87714 3.97968 4.10600 4.19551 4.32418 4.35637 4.49781 4.61883 4.68574 4.77031 4.85504 4.90450 5.01132 5.05063 5.07557 5.18276 5.31486 5.36028 5.42279 5.58055 5.73119 5.96089 6.50435 6.92731 7.16001 7.62662 8.62464 9.28668 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.016760 B = 0.005214 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.286295 B = 5368.474721 C = 6543.168219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.200 4.200 3 C -0.116 4.116 4 C -0.175 4.175 5 C 0.569 3.431 6 O -0.587 6.587 7 N -0.705 5.705 8 C 0.130 3.870 9 C 0.133 3.867 10 H 0.071 0.929 11 C -0.134 4.134 12 C 0.143 3.857 13 N -0.629 5.629 14 C -0.207 4.207 15 H 0.085 0.915 16 C -0.069 4.069 17 N -0.952 5.952 18 Si 0.965 3.035 19 H -0.266 1.266 20 H -0.299 1.299 21 H -0.291 1.291 22 C -0.218 4.218 23 S 0.240 5.760 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.145 0.855 28 H 0.406 0.594 29 H 0.081 0.919 30 H 0.042 0.958 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.024 0.976 34 H 0.036 0.964 35 H 0.245 0.755 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.636 -3.698 10.851 19.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.317 4.317 3 C -0.145 4.145 4 C -0.193 4.193 5 C 0.356 3.644 6 O -0.469 6.469 7 N -0.355 5.355 8 C 0.005 3.995 9 C 0.027 3.973 10 H 0.088 0.912 11 C -0.173 4.173 12 C 0.018 3.982 13 N -0.355 5.355 14 C -0.335 4.335 15 H 0.103 0.897 16 C -0.262 4.262 17 N -0.602 5.602 18 Si 0.795 3.205 19 H -0.191 1.191 20 H -0.226 1.226 21 H -0.218 1.218 22 C -0.357 4.357 23 S 0.506 5.494 24 H 0.104 0.896 25 H 0.106 0.894 26 H 0.104 0.896 27 H 0.163 0.837 28 H 0.242 0.758 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.119 0.881 33 H 0.042 0.958 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -16.192 -4.591 10.550 19.864 hybrid contribution 0.871 0.711 -1.175 1.626 sum -15.321 -3.880 9.375 18.376 Atomic orbital electron populations 1.20480 0.85026 1.04564 1.03960 1.24805 1.02122 0.95753 1.09057 1.21016 0.90075 1.00304 1.03072 1.20239 0.94442 0.92612 1.11980 1.18053 0.82755 0.87981 0.75631 1.90712 1.82928 1.20333 1.52958 1.45805 1.05090 1.11134 1.73435 1.21657 0.86517 0.90335 1.00976 1.22577 0.92144 0.93644 0.88980 0.91201 1.23478 0.96754 0.96607 1.00422 1.22044 0.88078 0.92292 0.95823 1.46012 1.06984 1.66359 1.16177 1.19212 0.92757 1.26662 0.94875 0.89747 1.25505 0.96601 1.03348 1.00711 1.70012 1.08152 1.52729 1.29308 0.85194 0.78207 0.77784 0.79361 1.19064 1.22621 1.21781 1.25918 1.06627 0.97407 1.05729 1.82712 0.91557 1.06873 1.68214 0.89638 0.89362 0.89613 0.83747 0.75808 0.90105 0.93920 0.90318 0.88061 0.95822 0.94555 0.94553 0.80446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 10.35 71.24 0.74 -0.30 16 2 C -0.20 -4.04 6.44 24.51 0.16 -3.88 16 3 C -0.12 -3.11 9.95 22.67 0.23 -2.88 16 4 C -0.17 -5.30 5.98 -19.87 -0.12 -5.42 16 5 C 0.57 20.92 7.79 86.59 0.67 21.60 16 6 O -0.59 -25.33 16.80 -4.16 -0.07 -25.40 16 7 N -0.71 -24.69 5.31 -466.59 -2.48 -27.17 16 8 C 0.13 4.70 5.52 86.38 0.48 5.17 16 9 C 0.13 4.90 4.10 41.79 0.17 5.08 16 10 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 11 C -0.13 -4.62 8.03 30.93 0.25 -4.37 16 12 C 0.14 6.54 7.40 83.18 0.62 7.15 16 13 N -0.63 -30.45 3.65 -713.89 -2.61 -33.06 16 14 C -0.21 -11.08 10.55 84.03 0.89 -10.20 16 15 H 0.08 4.33 7.50 -2.91 -0.02 4.31 16 16 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 17 N -0.95 -57.26 11.51 21.65 0.25 -57.01 16 18 Si 0.97 45.76 29.55 68.60 2.03 47.79 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 21 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 22 C -0.22 -5.44 10.38 67.30 0.70 -4.74 16 23 S 0.24 4.47 23.00 -56.49 -1.30 3.17 16 24 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 28 H 0.41 13.24 6.86 -92.71 -0.64 12.60 16 29 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.04 1.80 8.14 -2.38 -0.02 1.79 16 31 H 0.08 2.76 8.12 -2.38 -0.02 2.74 16 32 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.04 1.91 7.12 -2.39 -0.02 1.89 16 35 H 0.25 14.45 8.31 -92.71 -0.77 13.67 16 36 H 0.18 4.04 7.01 -2.91 -0.02 4.02 16 Total: -1.00 -71.04 321.23 1.52 -69.52 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.46 Total: 18.35 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 5.24 Total: 3.81 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -4.83 Total: -117.24 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.07 Total: -25.40 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Atomic # 16 Polarization: 4.47 SS G_CDS: -1.30 Total: 3.17 kcal Total: -71.04 1.52 -69.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038819418.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.930 kcal (2) G-P(sol) polarization free energy of solvation -71.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds