Wall clock time and date at job start Tue Mar 31 2020 01:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46507 * 110.64017 * 2 1 4 4 C 1.34781 * 119.99481 * 61.69172 * 3 2 1 5 5 O 1.21697 * 120.00557 * 359.97438 * 4 3 2 6 6 C 1.46583 * 119.99511 * 180.02562 * 4 3 2 7 7 C 1.36652 * 125.45817 * 180.02562 * 6 4 3 8 8 C 1.37476 * 113.29661 * 180.02562 * 7 6 4 9 9 C 1.33814 * 115.09860 * 359.97438 * 8 7 6 10 10 S 1.70614 * 110.95826 * 359.72647 * 9 8 7 11 11 C 1.55156 * 110.87263 * 236.75781 * 2 1 3 12 12 C 1.55130 * 101.48388 * 205.89767 * 11 2 1 13 13 N 1.47422 * 104.72242 * 37.29240 * 12 11 2 14 14 C 1.36935 * 125.64518 * 155.81677 * 13 12 11 15 15 H 1.08005 * 119.99877 * 179.68486 * 14 13 12 16 16 C 1.38811 * 120.00369 * 359.42000 * 14 13 12 17 17 N 1.31617 * 119.99773 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00451 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47045 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47426 * 119.99572 * 18 16 14 21 21 H 1.48501 * 109.46833 * 239.99815 * 18 16 14 22 22 C 1.47016 * 108.70314 * 335.55143 * 13 12 11 23 23 H 1.09001 * 109.47084 * 298.31105 * 1 2 3 24 24 H 1.09001 * 109.47438 * 58.30646 * 1 2 3 25 25 H 1.09000 * 109.46924 * 178.31197 * 1 2 3 26 26 H 0.96994 * 120.00375 * 241.68992 * 3 2 1 27 27 H 1.07999 * 123.34930 * 0.02562 * 7 6 4 28 28 H 1.07995 * 122.44787 * 180.02562 * 8 7 6 29 29 H 1.08007 * 124.51645 * 179.97438 * 9 8 7 30 30 H 1.09006 * 110.99969 * 324.13435 * 11 2 1 31 31 H 1.08998 * 111.00492 * 87.94418 * 11 2 1 32 32 H 1.09000 * 110.49697 * 278.45056 * 12 11 2 33 33 H 1.09001 * 110.34287 * 156.05818 * 12 11 2 34 34 H 0.97004 * 120.00382 * 180.02562 * 17 16 14 35 35 H 1.09003 * 109.88086 * 120.70618 * 22 13 12 36 36 H 1.09003 * 109.88164 * 241.71479 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3710 0.0000 4 6 1.7659 2.1967 1.0277 5 8 1.0833 1.8036 1.9554 6 6 2.2822 3.5686 1.0274 7 6 2.0680 4.4964 2.0076 8 6 2.6692 5.7060 1.7520 9 6 3.3528 5.7687 0.6034 10 16 3.2827 4.2818 -0.2303 11 6 2.0828 -0.7947 -1.2125 12 6 3.4707 -1.2411 -0.6824 13 7 3.2471 -1.5461 0.7426 14 6 4.0077 -2.3900 1.5069 15 1 3.7635 -2.5435 2.5478 16 6 5.0893 -3.0524 0.9428 17 7 5.3834 -2.8697 -0.3270 18 14 6.1265 -4.2042 1.9854 19 1 5.5909 -4.2359 3.3701 20 1 6.0830 -5.5707 1.4060 21 1 7.5305 -3.7211 2.0091 22 6 2.0761 -0.7891 1.2085 23 1 -0.3633 0.4874 0.9047 24 1 -0.3634 0.5399 -0.8744 25 1 -0.3633 -1.0272 -0.0303 26 1 2.5902 1.6845 -0.7395 27 1 1.4845 4.2990 2.8947 28 1 2.5958 6.5441 2.4292 29 1 3.8820 6.6426 0.2530 30 1 1.4514 -1.6545 -1.4367 31 1 2.1879 -0.1515 -2.0861 32 1 4.1970 -0.4354 -0.7884 33 1 3.8103 -2.1312 -1.2120 34 1 6.1390 -3.3329 -0.7214 35 1 1.3141 -1.4754 1.5780 36 1 2.3707 -0.1011 2.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046113220.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:11 Heat of formation + Delta-G solvation = 28.638251 kcal Electronic energy + Delta-G solvation = -19881.803602 eV Core-core repulsion = 16879.609496 eV Total energy + Delta-G solvation = -3002.194107 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.94231 -37.97259 -36.86302 -34.01191 -32.03827 -30.36406 -29.29888 -28.61548 -25.68489 -25.06830 -23.60175 -21.75489 -20.37982 -19.37803 -19.00962 -18.36330 -16.85929 -15.95877 -15.61197 -15.13001 -14.79797 -14.65797 -13.74641 -13.69049 -13.18370 -13.04489 -12.79818 -12.70070 -12.36781 -12.21476 -11.97593 -11.70658 -11.54712 -11.05397 -10.91999 -10.85829 -10.41727 -10.35382 -10.04017 -9.97095 -9.66968 -9.38082 -8.97131 -8.70920 -8.64055 -8.60213 -6.78713 -5.62775 -3.03321 0.48542 1.41064 1.81240 2.37446 3.33972 3.41927 3.45469 3.47848 3.50411 4.51855 4.82008 4.91469 5.18380 5.24765 5.38533 5.40109 5.51318 5.57559 5.74739 5.85968 6.01538 6.09536 6.17319 6.22726 6.24254 6.35138 6.45585 6.51564 6.70217 6.85429 7.13630 7.46641 7.66052 7.76052 7.85982 8.37194 8.44688 9.25597 9.86244 10.51050 11.41381 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.020719 B = 0.004943 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.069546 B = 5663.491009 C = 6102.343291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.159 3.841 3 N -0.703 5.703 4 C 0.590 3.410 5 O -0.526 6.526 6 C -0.254 4.254 7 C -0.065 4.065 8 C -0.149 4.149 9 C -0.238 4.238 10 S 0.202 5.798 11 C -0.147 4.147 12 C 0.151 3.849 13 N -0.604 5.604 14 C -0.216 4.216 15 H 0.077 0.923 16 C -0.013 4.013 17 N -0.925 5.925 18 Si 0.914 3.086 19 H -0.280 1.280 20 H -0.290 1.290 21 H -0.291 1.291 22 C 0.136 3.864 23 H 0.071 0.929 24 H 0.050 0.950 25 H 0.065 0.935 26 H 0.394 0.606 27 H 0.153 0.847 28 H 0.143 0.857 29 H 0.167 0.833 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.010 0.990 33 H 0.110 0.890 34 H 0.250 0.750 35 H 0.032 0.968 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.377 15.914 -3.000 17.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.074 3.926 3 N -0.353 5.353 4 C 0.375 3.625 5 O -0.404 6.404 6 C -0.375 4.375 7 C -0.098 4.098 8 C -0.180 4.180 9 C -0.376 4.376 10 S 0.469 5.531 11 C -0.186 4.186 12 C 0.026 3.974 13 N -0.330 5.330 14 C -0.344 4.344 15 H 0.095 0.905 16 C -0.208 4.208 17 N -0.574 5.574 18 Si 0.745 3.255 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C 0.009 3.991 23 H 0.090 0.910 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.228 0.772 27 H 0.171 0.829 28 H 0.161 0.839 29 H 0.184 0.816 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.028 0.972 33 H 0.128 0.872 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.076 14.943 -3.722 16.555 hybrid contribution 0.454 0.409 1.558 1.673 sum -5.623 15.352 -2.165 16.492 Atomic orbital electron populations 1.22038 0.94104 1.02265 1.02364 1.21398 0.93056 0.79859 0.98321 1.45886 1.53726 1.13006 1.22683 1.16876 0.80115 0.82906 0.82595 1.90792 1.38821 1.75788 1.35006 1.24846 1.10527 0.99768 1.02343 1.20789 0.98775 0.91301 0.98901 1.20029 1.00877 0.98948 0.98184 1.25299 1.07468 1.03693 1.01164 1.83116 1.45643 1.02579 1.21772 1.23405 1.01323 0.98854 0.94969 1.22013 0.89293 1.00682 0.85375 1.44514 1.30460 1.50447 1.07583 1.19154 1.06041 1.16292 0.92932 0.90478 1.24752 0.98848 1.00770 0.96443 1.69770 1.30240 1.46572 1.10858 0.85995 0.80009 0.80353 0.79176 1.20541 1.21759 1.21838 1.21610 0.90343 0.93193 0.93910 0.91014 0.93071 0.91575 0.77170 0.82949 0.83918 0.81576 0.90309 0.91925 0.97213 0.87216 0.93873 0.95045 0.94722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 8.41 37.16 0.31 -2.07 16 2 C 0.16 2.92 0.81 -129.98 -0.10 2.82 16 3 N -0.70 -11.80 5.14 -47.23 -0.24 -12.04 16 4 C 0.59 10.25 7.01 -12.89 -0.09 10.16 16 5 O -0.53 -10.58 13.78 5.19 0.07 -10.50 16 6 C -0.25 -3.64 6.45 -36.79 -0.24 -3.88 16 7 C -0.06 -0.82 10.01 -40.43 -0.40 -1.23 16 8 C -0.15 -1.52 10.15 -41.41 -0.42 -1.94 16 9 C -0.24 -2.28 10.92 29.18 0.32 -1.96 16 10 S 0.20 2.24 22.16 -107.50 -2.38 -0.15 16 11 C -0.15 -2.69 6.11 -24.46 -0.15 -2.84 16 12 C 0.15 3.62 5.90 -2.41 -0.01 3.61 16 13 N -0.60 -15.87 3.39 -169.94 -0.58 -16.45 16 14 C -0.22 -6.19 10.27 -15.06 -0.15 -6.34 16 15 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 16 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 17 N -0.92 -26.96 10.08 55.49 0.56 -26.40 16 18 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 C 0.14 3.10 6.12 -3.07 -0.02 3.09 16 23 H 0.07 1.23 6.43 -51.93 -0.33 0.90 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 26 H 0.39 5.84 7.58 -40.82 -0.31 5.53 16 27 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 28 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 29 H 0.17 1.12 8.06 -52.48 -0.42 0.70 16 30 H 0.08 1.41 8.05 -51.93 -0.42 0.99 16 31 H 0.06 0.97 8.04 -51.93 -0.42 0.55 16 32 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.11 2.95 5.84 -51.93 -0.30 2.65 16 34 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.03 0.72 7.82 -51.93 -0.41 0.32 16 36 H 0.03 0.86 6.48 -51.93 -0.34 0.53 16 LS Contribution 308.04 15.07 4.64 4.64 Total: -1.00 -32.29 308.04 -8.62 -40.91 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.61 Total: 3.60 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -1.06 Total: -1.07 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: -0.26 Total: -54.89 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.07 Total: -10.50 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -2.38 Total: -0.15 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.29 -8.62 -40.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046113220.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.548 kcal (2) G-P(sol) polarization free energy of solvation -32.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds