Wall clock time and date at job start Tue Mar 31 2020 01:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46507 * 110.64017 * 2 1 4 4 C 1.34781 * 119.99481 * 61.69172 * 3 2 1 5 5 O 1.21697 * 120.00557 * 359.97438 * 4 3 2 6 6 C 1.46583 * 119.99511 * 180.02562 * 4 3 2 7 7 C 1.36652 * 125.45817 * 180.02562 * 6 4 3 8 8 C 1.37476 * 113.29661 * 180.02562 * 7 6 4 9 9 C 1.33814 * 115.09860 * 359.97438 * 8 7 6 10 10 S 1.70614 * 110.95826 * 359.72647 * 9 8 7 11 11 C 1.55156 * 110.87263 * 236.75781 * 2 1 3 12 12 C 1.55130 * 101.48388 * 205.89767 * 11 2 1 13 13 N 1.47422 * 104.72242 * 37.29240 * 12 11 2 14 14 C 1.36935 * 125.64518 * 155.81677 * 13 12 11 15 15 H 1.08005 * 119.99877 * 179.68486 * 14 13 12 16 16 C 1.38811 * 120.00369 * 359.42000 * 14 13 12 17 17 N 1.31617 * 119.99773 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00451 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47045 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47426 * 119.99572 * 18 16 14 21 21 H 1.48501 * 109.46833 * 239.99815 * 18 16 14 22 22 C 1.47016 * 108.70314 * 335.55143 * 13 12 11 23 23 H 1.09001 * 109.47084 * 298.31105 * 1 2 3 24 24 H 1.09001 * 109.47438 * 58.30646 * 1 2 3 25 25 H 1.09000 * 109.46924 * 178.31197 * 1 2 3 26 26 H 0.96994 * 120.00375 * 241.68992 * 3 2 1 27 27 H 1.07999 * 123.34930 * 0.02562 * 7 6 4 28 28 H 1.07995 * 122.44787 * 180.02562 * 8 7 6 29 29 H 1.08007 * 124.51645 * 179.97438 * 9 8 7 30 30 H 1.09006 * 110.99969 * 324.13435 * 11 2 1 31 31 H 1.08998 * 111.00492 * 87.94418 * 11 2 1 32 32 H 1.09000 * 110.49697 * 278.45056 * 12 11 2 33 33 H 1.09001 * 110.34287 * 156.05818 * 12 11 2 34 34 H 0.97004 * 120.00382 * 180.02562 * 17 16 14 35 35 H 1.09003 * 109.88086 * 120.70618 * 22 13 12 36 36 H 1.09003 * 109.88164 * 241.71479 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3710 0.0000 4 6 1.7659 2.1967 1.0277 5 8 1.0833 1.8036 1.9554 6 6 2.2822 3.5686 1.0274 7 6 2.0680 4.4964 2.0076 8 6 2.6692 5.7060 1.7520 9 6 3.3528 5.7687 0.6034 10 16 3.2827 4.2818 -0.2303 11 6 2.0828 -0.7947 -1.2125 12 6 3.4707 -1.2411 -0.6824 13 7 3.2471 -1.5461 0.7426 14 6 4.0077 -2.3900 1.5069 15 1 3.7635 -2.5435 2.5478 16 6 5.0893 -3.0524 0.9428 17 7 5.3834 -2.8697 -0.3270 18 14 6.1265 -4.2042 1.9854 19 1 5.5909 -4.2359 3.3701 20 1 6.0830 -5.5707 1.4060 21 1 7.5305 -3.7211 2.0091 22 6 2.0761 -0.7891 1.2085 23 1 -0.3633 0.4874 0.9047 24 1 -0.3634 0.5399 -0.8744 25 1 -0.3633 -1.0272 -0.0303 26 1 2.5902 1.6845 -0.7395 27 1 1.4845 4.2990 2.8947 28 1 2.5958 6.5441 2.4292 29 1 3.8820 6.6426 0.2530 30 1 1.4514 -1.6545 -1.4367 31 1 2.1879 -0.1515 -2.0861 32 1 4.1970 -0.4354 -0.7884 33 1 3.8103 -2.1312 -1.2120 34 1 6.1390 -3.3329 -0.7214 35 1 1.3141 -1.4754 1.5780 36 1 2.3707 -0.1011 2.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046113220.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:10 Heat of formation + Delta-G solvation = 7.267742 kcal Electronic energy + Delta-G solvation = -19882.730297 eV Core-core repulsion = 16879.609496 eV Total energy + Delta-G solvation = -3003.120802 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.34483 -39.23898 -38.13993 -35.76755 -33.77418 -31.99856 -30.61137 -30.13186 -27.56738 -26.15126 -25.29050 -22.98215 -22.22414 -20.69370 -20.19640 -19.53181 -18.83854 -17.24870 -16.91065 -16.65402 -16.29374 -16.16223 -15.57794 -15.09958 -14.59720 -14.37382 -14.07327 -13.90498 -13.67791 -13.54071 -13.35485 -13.29221 -13.05250 -12.83419 -12.79712 -12.11209 -12.06804 -11.98003 -11.91499 -11.70620 -11.57875 -10.87702 -10.77036 -10.18712 -9.81583 -9.52698 -8.89844 -7.79485 -5.23552 -0.46754 0.50391 0.95789 1.44546 1.45166 1.45405 1.56193 2.06663 2.22766 2.47606 3.29571 3.54025 3.68762 3.87136 3.98962 4.14710 4.15092 4.37294 4.55771 4.61232 4.65131 4.75117 4.82772 4.88976 4.99195 5.02550 5.07529 5.23370 5.30826 5.38545 5.41821 5.57376 5.62977 5.78745 6.30209 6.47731 7.09474 7.14957 7.75615 8.39426 9.21853 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.020719 B = 0.004943 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.069546 B = 5663.491009 C = 6102.343291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.168 3.832 3 N -0.701 5.701 4 C 0.586 3.414 5 O -0.565 6.565 6 C -0.301 4.301 7 C -0.062 4.062 8 C -0.158 4.158 9 C -0.218 4.218 10 S 0.224 5.776 11 C -0.127 4.127 12 C 0.153 3.847 13 N -0.623 5.623 14 C -0.243 4.243 15 H 0.069 0.931 16 C -0.059 4.059 17 N -0.944 5.944 18 Si 0.978 3.022 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.290 1.290 22 C 0.135 3.865 23 H 0.056 0.944 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.404 0.596 27 H 0.146 0.854 28 H 0.172 0.828 29 H 0.203 0.797 30 H 0.089 0.911 31 H 0.100 0.900 32 H -0.009 1.009 33 H 0.080 0.920 34 H 0.249 0.751 35 H 0.025 0.975 36 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.303 17.698 -3.977 19.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.082 3.918 3 N -0.351 5.351 4 C 0.374 3.626 5 O -0.446 6.446 6 C -0.422 4.422 7 C -0.096 4.096 8 C -0.188 4.188 9 C -0.355 4.355 10 S 0.491 5.509 11 C -0.166 4.166 12 C 0.029 3.971 13 N -0.349 5.349 14 C -0.372 4.372 15 H 0.087 0.913 16 C -0.252 4.252 17 N -0.593 5.593 18 Si 0.807 3.193 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.217 1.217 22 C 0.009 3.991 23 H 0.075 0.925 24 H 0.098 0.902 25 H 0.092 0.908 26 H 0.240 0.760 27 H 0.164 0.836 28 H 0.190 0.810 29 H 0.220 0.780 30 H 0.107 0.893 31 H 0.119 0.881 32 H 0.009 0.991 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.043 0.957 36 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -6.008 16.748 -4.726 18.410 hybrid contribution 0.490 -0.055 1.889 1.952 sum -5.517 16.693 -2.838 17.808 Atomic orbital electron populations 1.21959 0.91841 1.03094 1.02925 1.21247 0.94542 0.80190 0.95822 1.45807 1.53901 1.12257 1.23161 1.17320 0.79407 0.84067 0.81850 1.90756 1.40666 1.76945 1.36262 1.24660 1.13618 0.98831 1.05052 1.21026 0.98210 0.92133 0.98255 1.20248 1.00734 0.98700 0.99128 1.25790 1.05826 1.03815 1.00116 1.83002 1.44342 1.03074 1.20500 1.23265 0.97595 0.99806 0.95941 1.21839 0.92232 0.98768 0.84282 1.44790 1.31036 1.50453 1.08606 1.19414 1.07148 1.17421 0.93198 0.91291 1.25538 0.99817 1.02149 0.97718 1.69999 1.30346 1.47034 1.11957 0.85012 0.78067 0.78299 0.77951 1.19868 1.21177 1.21666 1.21678 0.89226 0.92748 0.95435 0.92535 0.90232 0.90757 0.75996 0.83589 0.81042 0.78020 0.89297 0.88118 0.99108 0.90181 0.94101 0.95713 0.97457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.29 8.41 71.98 0.61 -3.69 16 2 C 0.17 6.11 0.81 4.79 0.00 6.11 16 3 N -0.70 -23.31 5.14 -421.55 -2.17 -25.48 16 4 C 0.59 20.67 7.01 86.42 0.61 21.27 16 5 O -0.57 -23.61 13.78 -4.34 -0.06 -23.67 16 6 C -0.30 -8.51 6.45 24.08 0.16 -8.35 16 7 C -0.06 -1.53 10.01 21.72 0.22 -1.31 16 8 C -0.16 -2.78 10.15 21.08 0.21 -2.57 16 9 C -0.22 -3.38 10.92 66.81 0.73 -2.65 16 10 S 0.22 4.49 22.16 -56.49 -1.25 3.24 16 11 C -0.13 -4.50 6.11 32.06 0.20 -4.31 16 12 C 0.15 7.46 5.90 86.93 0.51 7.97 16 13 N -0.62 -33.71 3.39 -691.57 -2.35 -36.06 16 14 C -0.24 -14.35 10.27 84.03 0.86 -13.49 16 15 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 16 C -0.06 -3.44 5.49 84.86 0.47 -2.97 16 17 N -0.94 -55.96 10.08 21.65 0.22 -55.75 16 18 Si 0.98 46.76 29.55 68.60 2.03 48.78 16 19 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 21 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 22 C 0.14 6.38 6.12 86.73 0.53 6.91 16 23 H 0.06 1.93 6.43 -2.39 -0.02 1.92 16 24 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.07 2.14 8.13 -2.39 -0.02 2.12 16 26 H 0.40 11.58 7.58 -92.71 -0.70 10.88 16 27 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 28 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 29 H 0.20 1.68 8.06 -2.91 -0.02 1.66 16 30 H 0.09 3.00 8.05 -2.38 -0.02 2.98 16 31 H 0.10 2.81 8.04 -2.39 -0.02 2.79 16 32 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 33 H 0.08 4.40 5.84 -2.39 -0.01 4.39 16 34 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 35 H 0.02 1.19 7.82 -2.39 -0.02 1.17 16 36 H 0.01 0.39 6.48 -2.39 -0.02 0.37 16 Total: -1.00 -72.66 308.04 1.92 -70.74 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.39 Total: 15.24 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 5.10 Total: 2.94 kcal Atomic # 7 Polarization: -112.99 SS G_CDS: -4.29 Total: -117.28 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.06 Total: -23.67 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.78 kcal Atomic # 16 Polarization: 4.49 SS G_CDS: -1.25 Total: 3.24 kcal Total: -72.66 1.92 -70.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046113220.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.009 kcal (2) G-P(sol) polarization free energy of solvation -72.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds