Wall clock time and date at job start Tue Mar 31 2020 01:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 110.88658 * 2 1 4 4 C 1.34770 * 120.00235 * 303.88542 * 3 2 1 5 5 O 1.21644 * 120.00101 * 359.97438 * 4 3 2 6 6 C 1.47195 * 120.00354 * 179.97438 * 4 3 2 7 7 C 1.44419 * 123.46309 * 179.97438 * 6 4 3 8 8 C 1.32775 * 113.08207 * 179.97438 * 7 6 4 9 9 S 1.75499 * 110.57743 * 0.02562 * 8 7 6 10 10 C 1.36012 * 123.45489 * 359.97438 * 6 4 3 11 11 C 1.55151 * 111.00632 * 123.88376 * 2 1 3 12 12 C 1.54321 * 102.94581 * 153.61094 * 11 2 1 13 13 N 1.47023 * 107.26987 * 337.81215 * 12 11 2 14 14 C 1.36936 * 125.64809 * 178.98556 * 13 12 11 15 15 H 1.07997 * 119.99913 * 174.78331 * 14 13 12 16 16 C 1.38817 * 120.00008 * 354.78097 * 14 13 12 17 17 N 1.31620 * 119.99569 * 7.05703 * 16 14 13 18 18 Si 1.86800 * 120.00175 * 187.05520 * 16 14 13 19 19 H 1.48493 * 109.47034 * 94.98741 * 18 16 14 20 20 H 1.48495 * 109.47112 * 214.99006 * 18 16 14 21 21 H 1.48504 * 109.46807 * 334.98861 * 18 16 14 22 22 C 1.47421 * 108.70461 * 358.93500 * 13 12 11 23 23 H 1.09007 * 109.47154 * 59.29624 * 1 2 3 24 24 H 1.09002 * 109.47478 * 179.29383 * 1 2 3 25 25 H 1.08995 * 109.47278 * 299.30001 * 1 2 3 26 26 H 0.97000 * 119.99754 * 123.87521 * 3 2 1 27 27 H 1.07999 * 123.46038 * 359.97438 * 7 6 4 28 28 H 1.08003 * 124.70834 * 179.97438 * 8 7 6 29 29 H 1.07996 * 124.59285 * 0.03709 * 10 6 4 30 30 H 1.09005 * 110.72028 * 271.98034 * 11 2 1 31 31 H 1.09002 * 110.72119 * 35.07230 * 11 2 1 32 32 H 1.09004 * 109.88093 * 97.22503 * 12 11 2 33 33 H 1.08992 * 109.88624 * 218.38853 * 12 11 2 34 34 H 0.97000 * 119.99626 * 179.97438 * 17 16 14 35 35 H 1.08996 * 110.36592 * 265.29396 * 22 13 12 36 36 H 1.08998 * 110.37025 * 142.97230 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.6846 2.2303 -0.9689 5 8 0.9194 1.8714 -1.8437 6 6 2.2089 3.6057 -0.9686 7 6 1.8656 4.5890 -1.9691 8 6 2.4549 5.7620 -1.7698 9 16 3.4646 5.7093 -0.3353 10 6 3.0666 4.0810 -0.0260 11 6 2.0862 -0.8075 1.2024 12 6 3.4678 -1.2731 0.6967 13 7 3.4280 -1.2421 -0.7726 14 6 4.4653 -1.5655 -1.6061 15 1 4.3112 -1.5920 -2.6747 16 6 5.7148 -1.8591 -1.0775 17 7 5.8702 -1.9632 0.2254 18 14 7.1756 -2.1065 -2.2151 19 1 7.9229 -0.8300 -2.3458 20 1 8.0708 -3.1488 -1.6517 21 1 6.6942 -2.5375 -3.5522 22 6 2.0861 -0.8064 -1.2001 23 1 -0.3634 0.5248 -0.8837 24 1 -0.3634 -1.0276 -0.0127 25 1 -0.3633 0.5029 0.8961 26 1 2.6627 1.6549 0.6975 27 1 1.1981 4.3907 -2.7946 28 1 2.3308 6.6281 -2.4031 29 1 3.4444 3.5047 0.8055 30 1 2.1915 -0.1694 2.0799 31 1 1.4455 -1.6613 1.4230 32 1 4.2426 -0.5983 1.0609 33 1 3.6658 -2.2881 1.0409 34 1 6.7433 -2.1688 0.5947 35 1 1.4533 -1.6705 -1.4023 36 1 2.1567 -0.1719 -2.0835 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046122688.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:13 Heat of formation + Delta-G solvation = 25.213540 kcal Electronic energy + Delta-G solvation = -20051.513740 eV Core-core repulsion = 17049.171127 eV Total energy + Delta-G solvation = -3002.342614 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.94743 -37.74428 -36.36977 -33.92213 -32.04164 -30.34476 -29.22977 -28.62459 -25.66218 -24.95575 -23.62856 -21.75584 -20.25329 -19.37953 -18.79775 -17.98693 -16.95289 -16.60938 -15.41064 -14.67640 -14.61498 -14.54109 -13.76479 -13.60679 -13.14187 -13.08027 -12.81873 -12.67369 -12.39510 -11.98967 -11.88519 -11.77739 -11.65014 -11.14494 -10.88801 -10.86661 -10.36391 -10.34085 -10.06055 -9.99674 -9.66566 -9.26222 -9.08576 -8.65964 -8.53798 -8.37710 -6.78447 -5.71036 -3.01406 0.79014 1.50717 1.87600 2.09322 3.41245 3.47086 3.48788 3.50079 3.69079 4.52359 4.73730 5.03073 5.15548 5.29460 5.37519 5.41886 5.51214 5.64208 5.73905 5.79341 6.01288 6.07118 6.15878 6.19072 6.26180 6.38949 6.41649 6.56065 6.71874 6.83248 7.15349 7.54133 7.58020 7.81314 7.93876 8.27238 8.60859 9.24601 9.84817 10.51357 11.41522 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.015421 B = 0.005870 C = 0.004856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.274439 B = 4768.708803 C = 5764.283759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.157 3.843 3 N -0.695 5.695 4 C 0.579 3.421 5 O -0.538 6.538 6 C -0.147 4.147 7 C -0.083 4.083 8 C -0.240 4.240 9 S 0.171 5.829 10 C -0.208 4.208 11 C -0.147 4.147 12 C 0.176 3.824 13 N -0.603 5.603 14 C -0.221 4.221 15 H 0.077 0.923 16 C -0.009 4.009 17 N -0.923 5.923 18 Si 0.908 3.092 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.133 3.867 23 H 0.078 0.922 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.396 0.604 27 H 0.153 0.847 28 H 0.167 0.833 29 H 0.170 0.830 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.042 0.958 34 H 0.251 0.749 35 H 0.026 0.974 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.763 14.143 2.850 16.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.071 3.929 3 N -0.344 5.344 4 C 0.364 3.636 5 O -0.417 6.417 6 C -0.165 4.165 7 C -0.112 4.112 8 C -0.375 4.375 9 S 0.436 5.564 10 C -0.347 4.347 11 C -0.185 4.185 12 C 0.052 3.948 13 N -0.329 5.329 14 C -0.350 4.350 15 H 0.094 0.906 16 C -0.205 4.205 17 N -0.571 5.571 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.206 1.206 22 C 0.006 3.994 23 H 0.097 0.903 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.231 0.769 27 H 0.171 0.829 28 H 0.185 0.815 29 H 0.187 0.813 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.044 0.956 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.161 14.842 2.964 16.743 hybrid contribution 0.411 -1.166 -0.840 1.494 sum -6.750 13.676 2.124 15.398 Atomic orbital electron populations 1.22038 0.94146 1.02186 1.02708 1.21496 0.92760 0.80535 0.98124 1.45670 1.48360 1.11777 1.28603 1.17472 0.80790 0.83764 0.81603 1.90716 1.36102 1.78242 1.36677 1.20470 1.02422 0.96079 0.97516 1.21153 1.00197 0.90868 0.99014 1.25463 1.05748 1.02709 1.03564 1.82957 1.45527 1.06001 1.21944 1.25688 1.03129 1.01445 1.04400 1.23229 1.00479 0.98956 0.95881 1.21160 0.90009 0.99874 0.83798 1.44440 1.08022 1.78679 1.01759 1.19072 0.87442 1.39227 0.89219 0.90564 1.24775 0.97457 1.02228 0.95996 1.69963 1.22408 1.55278 1.09478 0.86141 0.82862 0.77337 0.79778 1.21742 1.21798 1.20637 1.21883 0.87589 0.94860 0.95087 0.90288 0.91903 0.93238 0.76934 0.82919 0.81512 0.81265 0.91832 0.90788 0.93569 0.93967 0.93890 0.95628 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.52 37.16 0.32 -2.09 16 2 C 0.16 2.86 0.82 -129.67 -0.11 2.75 16 3 N -0.69 -11.85 5.15 -46.75 -0.24 -12.09 16 4 C 0.58 10.23 7.16 -12.63 -0.09 10.14 16 5 O -0.54 -10.87 13.65 5.24 0.07 -10.80 16 6 C -0.15 -2.18 5.98 -104.63 -0.63 -2.81 16 7 C -0.08 -1.09 10.10 -39.02 -0.39 -1.48 16 8 C -0.24 -2.51 11.12 28.86 0.32 -2.19 16 9 S 0.17 1.71 23.02 -107.50 -2.48 -0.76 16 10 C -0.21 -2.59 10.38 29.93 0.31 -2.28 16 11 C -0.15 -2.63 5.97 -24.90 -0.15 -2.77 16 12 C 0.18 4.17 5.37 -3.07 -0.02 4.16 16 13 N -0.60 -15.58 3.39 -170.08 -0.58 -16.16 16 14 C -0.22 -6.32 10.27 -15.06 -0.15 -6.47 16 15 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 16 C -0.01 -0.25 5.48 -17.43 -0.10 -0.35 16 17 N -0.92 -27.00 10.36 55.49 0.57 -26.43 16 18 Si 0.91 22.52 29.56 -169.99 -5.02 17.49 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 C 0.13 2.97 6.17 -2.53 -0.02 2.95 16 23 H 0.08 1.37 6.00 -51.93 -0.31 1.06 16 24 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.40 6.05 7.01 -40.82 -0.29 5.77 16 27 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 28 H 0.17 1.27 8.06 -52.48 -0.42 0.85 16 29 H 0.17 1.85 7.01 -52.49 -0.37 1.48 16 30 H 0.06 0.98 8.09 -51.93 -0.42 0.56 16 31 H 0.07 1.23 8.04 -51.93 -0.42 0.82 16 32 H 0.05 1.19 7.30 -51.93 -0.38 0.81 16 33 H 0.04 1.11 7.61 -51.93 -0.40 0.72 16 34 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.03 0.57 8.03 -51.93 -0.42 0.16 16 36 H 0.05 1.23 6.86 -51.93 -0.36 0.88 16 LS Contribution 308.28 15.07 4.65 4.65 Total: -1.00 -32.39 308.28 -8.31 -40.70 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -4.59 Total: 3.85 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -0.70 Total: -0.45 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.24 Total: -54.68 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.07 Total: -10.80 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.48 Total: -0.76 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.39 -8.31 -40.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046122688.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.914 kcal (2) G-P(sol) polarization free energy of solvation -32.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds