Wall clock time and date at job start Tue Mar 31 2020 01:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 110.88658 * 2 1 4 4 C 1.34770 * 120.00235 * 303.88542 * 3 2 1 5 5 O 1.21644 * 120.00101 * 359.97438 * 4 3 2 6 6 C 1.47195 * 120.00354 * 179.97438 * 4 3 2 7 7 C 1.44419 * 123.46309 * 179.97438 * 6 4 3 8 8 C 1.32775 * 113.08207 * 179.97438 * 7 6 4 9 9 S 1.75499 * 110.57743 * 0.02562 * 8 7 6 10 10 C 1.36012 * 123.45489 * 359.97438 * 6 4 3 11 11 C 1.55151 * 111.00632 * 123.88376 * 2 1 3 12 12 C 1.54321 * 102.94581 * 153.61094 * 11 2 1 13 13 N 1.47023 * 107.26987 * 337.81215 * 12 11 2 14 14 C 1.36936 * 125.64809 * 178.98556 * 13 12 11 15 15 H 1.07997 * 119.99913 * 174.78331 * 14 13 12 16 16 C 1.38817 * 120.00008 * 354.78097 * 14 13 12 17 17 N 1.31620 * 119.99569 * 7.05703 * 16 14 13 18 18 Si 1.86800 * 120.00175 * 187.05520 * 16 14 13 19 19 H 1.48493 * 109.47034 * 94.98741 * 18 16 14 20 20 H 1.48495 * 109.47112 * 214.99006 * 18 16 14 21 21 H 1.48504 * 109.46807 * 334.98861 * 18 16 14 22 22 C 1.47421 * 108.70461 * 358.93500 * 13 12 11 23 23 H 1.09007 * 109.47154 * 59.29624 * 1 2 3 24 24 H 1.09002 * 109.47478 * 179.29383 * 1 2 3 25 25 H 1.08995 * 109.47278 * 299.30001 * 1 2 3 26 26 H 0.97000 * 119.99754 * 123.87521 * 3 2 1 27 27 H 1.07999 * 123.46038 * 359.97438 * 7 6 4 28 28 H 1.08003 * 124.70834 * 179.97438 * 8 7 6 29 29 H 1.07996 * 124.59285 * 0.03709 * 10 6 4 30 30 H 1.09005 * 110.72028 * 271.98034 * 11 2 1 31 31 H 1.09002 * 110.72119 * 35.07230 * 11 2 1 32 32 H 1.09004 * 109.88093 * 97.22503 * 12 11 2 33 33 H 1.08992 * 109.88624 * 218.38853 * 12 11 2 34 34 H 0.97000 * 119.99626 * 179.97438 * 17 16 14 35 35 H 1.08996 * 110.36592 * 265.29396 * 22 13 12 36 36 H 1.08998 * 110.37025 * 142.97230 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.6846 2.2303 -0.9689 5 8 0.9194 1.8714 -1.8437 6 6 2.2089 3.6057 -0.9686 7 6 1.8656 4.5890 -1.9691 8 6 2.4549 5.7620 -1.7698 9 16 3.4646 5.7093 -0.3353 10 6 3.0666 4.0810 -0.0260 11 6 2.0862 -0.8075 1.2024 12 6 3.4678 -1.2731 0.6967 13 7 3.4280 -1.2421 -0.7726 14 6 4.4653 -1.5655 -1.6061 15 1 4.3112 -1.5920 -2.6747 16 6 5.7148 -1.8591 -1.0775 17 7 5.8702 -1.9632 0.2254 18 14 7.1756 -2.1065 -2.2151 19 1 7.9229 -0.8300 -2.3458 20 1 8.0708 -3.1488 -1.6517 21 1 6.6942 -2.5375 -3.5522 22 6 2.0861 -0.8064 -1.2001 23 1 -0.3634 0.5248 -0.8837 24 1 -0.3634 -1.0276 -0.0127 25 1 -0.3633 0.5029 0.8961 26 1 2.6627 1.6549 0.6975 27 1 1.1981 4.3907 -2.7946 28 1 2.3308 6.6281 -2.4031 29 1 3.4444 3.5047 0.8055 30 1 2.1915 -0.1694 2.0799 31 1 1.4455 -1.6613 1.4230 32 1 4.2426 -0.5983 1.0609 33 1 3.6658 -2.2881 1.0409 34 1 6.7433 -2.1688 0.5947 35 1 1.4533 -1.6705 -1.4023 36 1 2.1567 -0.1719 -2.0835 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046122688.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:12 Heat of formation + Delta-G solvation = 3.722756 kcal Electronic energy + Delta-G solvation = -20052.445650 eV Core-core repulsion = 17049.171127 eV Total energy + Delta-G solvation = -3003.274524 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.33275 -39.18605 -37.58667 -35.67812 -33.75250 -31.97464 -30.57584 -30.10294 -27.53782 -26.09919 -25.34781 -22.98834 -22.08191 -20.70062 -20.10388 -19.17051 -18.62957 -17.88800 -17.00930 -16.65745 -16.07137 -15.74434 -15.57694 -15.17708 -14.44688 -14.23343 -13.97189 -13.83901 -13.79654 -13.53989 -13.37033 -13.35460 -13.06494 -12.83364 -12.76688 -12.16940 -12.04730 -12.03559 -11.95840 -11.72835 -11.57655 -10.71398 -10.64601 -10.08642 -9.94686 -9.32014 -8.87685 -7.88867 -5.21235 -0.18674 0.64638 0.97449 1.05235 1.42320 1.43282 1.52629 2.21052 2.43683 2.46656 3.29216 3.55900 3.68734 3.87146 4.02856 4.04504 4.17928 4.34912 4.46072 4.62260 4.68328 4.78887 4.85045 4.85602 4.91118 5.00812 5.07101 5.15533 5.29598 5.37783 5.41933 5.62648 5.67810 5.75885 6.18163 6.62366 7.09881 7.28611 7.75149 8.40181 9.21584 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.015421 B = 0.005870 C = 0.004856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.274439 B = 4768.708803 C = 5764.283759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.167 3.833 3 N -0.694 5.694 4 C 0.573 3.427 5 O -0.574 6.574 6 C -0.181 4.181 7 C -0.111 4.111 8 C -0.230 4.230 9 S 0.240 5.760 10 C -0.215 4.215 11 C -0.128 4.128 12 C 0.184 3.816 13 N -0.620 5.620 14 C -0.243 4.243 15 H 0.067 0.933 16 C -0.056 4.056 17 N -0.943 5.943 18 Si 0.971 3.029 19 H -0.287 1.287 20 H -0.289 1.289 21 H -0.275 1.275 22 C 0.130 3.870 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.405 0.595 27 H 0.145 0.855 28 H 0.199 0.801 29 H 0.181 0.819 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.020 0.980 33 H 0.008 0.992 34 H 0.249 0.751 35 H 0.027 0.973 36 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.705 16.001 3.734 18.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.080 3.920 3 N -0.344 5.344 4 C 0.360 3.640 5 O -0.455 6.455 6 C -0.199 4.199 7 C -0.140 4.140 8 C -0.365 4.365 9 S 0.505 5.495 10 C -0.354 4.354 11 C -0.166 4.166 12 C 0.059 3.941 13 N -0.346 5.346 14 C -0.373 4.373 15 H 0.085 0.915 16 C -0.250 4.250 17 N -0.592 5.592 18 Si 0.800 3.200 19 H -0.214 1.214 20 H -0.215 1.215 21 H -0.200 1.200 22 C 0.003 3.997 23 H 0.080 0.920 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.241 0.759 27 H 0.163 0.837 28 H 0.216 0.784 29 H 0.198 0.802 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.039 0.961 33 H 0.026 0.974 34 H 0.058 0.942 35 H 0.044 0.956 36 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -7.116 16.721 3.860 18.577 hybrid contribution 0.443 -1.672 -1.128 2.065 sum -6.674 15.048 2.732 16.687 Atomic orbital electron populations 1.21955 0.91847 1.03174 1.03115 1.21380 0.94253 0.80661 0.95751 1.45654 1.48545 1.11241 1.28946 1.17970 0.80181 0.84925 0.80906 1.90686 1.37751 1.79184 1.37894 1.20378 1.04737 0.95114 0.99720 1.21158 1.01757 0.91750 0.99300 1.25869 1.04190 1.02601 1.03832 1.82767 1.43397 1.03005 1.20289 1.25977 1.02057 1.03409 1.03949 1.23106 0.96899 1.00067 0.96571 1.20963 0.92935 0.97477 0.82699 1.44676 1.08676 1.78637 1.02637 1.19314 0.88860 1.39619 0.89463 0.91470 1.25516 0.99673 1.02289 0.97514 1.70149 1.22607 1.55719 1.10731 0.85169 0.79494 0.77157 0.78213 1.21355 1.21535 1.19973 1.21983 0.86447 0.95036 0.96191 0.92027 0.90569 0.90696 0.75943 0.83708 0.78440 0.80217 0.88478 0.88823 0.96138 0.97353 0.94213 0.95560 0.95742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.28 8.52 71.98 0.61 -3.67 16 2 C 0.17 5.93 0.82 5.00 0.00 5.93 16 3 N -0.69 -23.42 5.15 -420.07 -2.16 -25.59 16 4 C 0.57 20.54 7.16 86.60 0.62 21.16 16 5 O -0.57 -23.95 13.65 -4.17 -0.06 -24.01 16 6 C -0.18 -5.32 5.98 -19.87 -0.12 -5.44 16 7 C -0.11 -2.84 10.10 22.67 0.23 -2.62 16 8 C -0.23 -4.24 11.12 66.64 0.74 -3.50 16 9 S 0.24 4.06 23.02 -56.49 -1.30 2.76 16 10 C -0.22 -4.99 10.38 67.30 0.70 -4.29 16 11 C -0.13 -4.37 5.97 31.78 0.19 -4.18 16 12 C 0.18 8.83 5.37 86.73 0.47 9.30 16 13 N -0.62 -32.90 3.39 -692.00 -2.35 -35.25 16 14 C -0.24 -14.30 10.27 84.03 0.86 -13.43 16 15 H 0.07 3.94 7.84 -2.91 -0.02 3.92 16 16 C -0.06 -3.26 5.48 84.86 0.46 -2.80 16 17 N -0.94 -56.20 10.36 21.65 0.22 -55.98 16 18 Si 0.97 46.83 29.56 68.60 2.03 48.86 16 19 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 20 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 21 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 22 C 0.13 5.93 6.17 86.86 0.54 6.47 16 23 H 0.06 2.11 6.00 -2.38 -0.01 2.10 16 24 H 0.08 2.07 8.13 -2.39 -0.02 2.05 16 25 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.40 12.01 7.01 -92.71 -0.65 11.36 16 27 H 0.15 3.80 8.06 -2.91 -0.02 3.77 16 28 H 0.20 2.29 8.06 -2.91 -0.02 2.27 16 29 H 0.18 3.61 7.01 -2.91 -0.02 3.59 16 30 H 0.10 2.70 8.09 -2.38 -0.02 2.68 16 31 H 0.09 2.88 8.04 -2.39 -0.02 2.86 16 32 H 0.02 1.07 7.30 -2.38 -0.02 1.06 16 33 H 0.01 0.45 7.61 -2.39 -0.02 0.43 16 34 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 35 H 0.03 1.20 8.03 -2.39 -0.02 1.18 16 36 H 0.02 1.23 6.86 -2.39 -0.02 1.21 16 Total: -1.00 -72.58 308.28 2.14 -70.45 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.45 Total: 15.84 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 5.31 Total: 2.92 kcal Atomic # 7 Polarization: -112.52 SS G_CDS: -4.29 Total: -116.81 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.06 Total: -24.01 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Atomic # 16 Polarization: 4.06 SS G_CDS: -1.30 Total: 2.76 kcal Total: -72.58 2.14 -70.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046122688.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.168 kcal (2) G-P(sol) polarization free energy of solvation -72.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds