Wall clock time and date at job start Tue Mar 31 2020 01:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 110.88653 * 2 1 4 4 C 1.34775 * 120.00088 * 59.30047 * 3 2 1 5 5 O 1.21635 * 119.99817 * 359.97438 * 4 3 2 6 6 C 1.47192 * 119.99762 * 180.02562 * 4 3 2 7 7 C 1.44425 * 123.45613 * 179.97438 * 6 4 3 8 8 C 1.32773 * 113.08196 * 179.97438 * 7 6 4 9 9 S 1.75499 * 110.57722 * 359.97438 * 8 7 6 10 10 C 1.36003 * 123.46140 * 359.70277 * 6 4 3 11 11 C 1.55165 * 111.00426 * 236.07708 * 2 1 3 12 12 C 1.54320 * 102.94006 * 206.42285 * 11 2 1 13 13 N 1.47023 * 107.27576 * 22.19194 * 12 11 2 14 14 C 1.36933 * 125.64851 * 181.02277 * 13 12 11 15 15 H 1.08000 * 119.99877 * 180.02562 * 14 13 12 16 16 C 1.38811 * 120.00137 * 0.04163 * 14 13 12 17 17 N 1.31612 * 120.00209 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99839 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47162 * 90.00089 * 18 16 14 20 20 H 1.48510 * 109.47164 * 210.00153 * 18 16 14 21 21 H 1.48500 * 109.47352 * 330.00138 * 18 16 14 22 22 C 1.47424 * 108.70235 * 1.05739 * 13 12 11 23 23 H 1.09002 * 109.47153 * 297.57234 * 1 2 3 24 24 H 1.09001 * 109.46832 * 177.57425 * 1 2 3 25 25 H 1.09004 * 109.47261 * 57.57406 * 1 2 3 26 26 H 0.97008 * 119.99808 * 239.30462 * 3 2 1 27 27 H 1.08003 * 123.46033 * 359.97438 * 7 6 4 28 28 H 1.08004 * 124.71035 * 180.02562 * 8 7 6 29 29 H 1.07990 * 124.59749 * 359.97438 * 10 6 4 30 30 H 1.08990 * 110.71702 * 324.78417 * 11 2 1 31 31 H 1.09003 * 110.71788 * 88.06328 * 11 2 1 32 32 H 1.09006 * 109.88205 * 262.77151 * 12 11 2 33 33 H 1.09004 * 109.88414 * 141.61192 * 12 11 2 34 34 H 0.97000 * 120.00659 * 179.97438 * 17 16 14 35 35 H 1.08992 * 110.37079 * 217.03221 * 22 13 12 36 36 H 1.09005 * 110.45662 * 94.75392 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.7358 2.2108 1.0036 5 8 1.0162 1.8345 1.9091 6 6 2.2602 3.5862 1.0032 7 6 1.9689 4.5496 2.0390 8 6 2.5486 5.7262 1.8334 9 16 3.4845 5.7017 0.3490 10 6 3.0730 4.0786 0.0303 11 6 2.0861 -0.8084 -1.2020 12 6 3.4674 -1.2744 -0.6956 13 7 3.4272 -1.2427 0.7738 14 6 4.4641 -1.5660 1.6076 15 1 4.3334 -1.5108 2.6783 16 6 5.6833 -1.9644 1.0769 17 7 5.8429 -2.0310 -0.2278 18 14 7.0979 -2.4048 2.2146 19 1 7.0446 -3.8543 2.5327 20 1 8.3866 -2.0918 1.5461 21 1 6.9874 -1.6182 3.4693 22 6 2.0853 -0.8061 1.2006 23 1 -0.3633 0.4757 0.9110 24 1 -0.3633 -1.0268 -0.0435 25 1 -0.3634 0.5511 -0.8675 26 1 2.6259 1.6690 -0.7224 27 1 1.3436 4.3350 2.8931 28 1 2.4576 6.5796 2.4891 29 1 3.4113 3.5175 -0.8281 30 1 1.4468 -1.6637 -1.4203 31 1 2.1922 -0.1707 -2.0796 32 1 4.2426 -0.6001 -1.0598 33 1 3.6651 -2.2898 -1.0392 34 1 6.6949 -2.3090 -0.5987 35 1 2.1560 -0.1712 2.0837 36 1 1.4509 -1.6688 1.4043 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046122690.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:14 Heat of formation + Delta-G solvation = 25.087522 kcal Electronic energy + Delta-G solvation = -20049.875451 eV Core-core repulsion = 17047.527373 eV Total energy + Delta-G solvation = -3002.348078 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.94050 -37.73785 -36.35669 -33.92892 -32.03273 -30.33392 -29.23016 -28.62095 -25.65656 -24.95390 -23.61937 -21.75498 -20.25326 -19.37742 -18.78396 -17.98365 -16.95318 -16.59701 -15.41353 -14.67753 -14.60415 -14.53223 -13.75824 -13.59791 -13.13987 -13.07467 -12.80911 -12.67131 -12.39412 -12.00708 -11.87295 -11.76061 -11.63672 -11.15118 -10.87416 -10.86534 -10.35937 -10.34412 -10.06366 -9.97960 -9.63738 -9.27962 -9.08413 -8.64870 -8.55260 -8.37960 -6.77618 -5.68746 -3.00281 0.79233 1.50889 1.87680 2.09831 3.41948 3.47228 3.49147 3.50353 3.69914 4.53123 4.73723 5.02804 5.15536 5.29803 5.38351 5.43588 5.50719 5.63915 5.74591 5.79663 6.00869 6.07027 6.15977 6.18566 6.26463 6.38454 6.41507 6.56421 6.71089 6.85303 7.16158 7.56394 7.57760 7.81944 7.93852 8.28373 8.61538 9.26023 9.86049 10.52178 11.43472 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.015762 B = 0.005751 C = 0.004823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.047681 B = 4867.367176 C = 5804.319674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.157 3.843 3 N -0.695 5.695 4 C 0.579 3.421 5 O -0.538 6.538 6 C -0.146 4.146 7 C -0.083 4.083 8 C -0.240 4.240 9 S 0.170 5.830 10 C -0.209 4.209 11 C -0.147 4.147 12 C 0.177 3.823 13 N -0.603 5.603 14 C -0.220 4.220 15 H 0.076 0.924 16 C -0.010 4.010 17 N -0.926 5.926 18 Si 0.910 3.090 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.132 3.868 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.396 0.604 27 H 0.153 0.847 28 H 0.167 0.833 29 H 0.170 0.830 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.251 0.749 35 H 0.053 0.947 36 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.761 14.280 -2.867 16.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.070 3.930 3 N -0.345 5.345 4 C 0.364 3.636 5 O -0.416 6.416 6 C -0.164 4.164 7 C -0.112 4.112 8 C -0.375 4.375 9 S 0.435 5.565 10 C -0.347 4.347 11 C -0.185 4.185 12 C 0.053 3.947 13 N -0.329 5.329 14 C -0.348 4.348 15 H 0.094 0.906 16 C -0.206 4.206 17 N -0.574 5.574 18 Si 0.741 3.259 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.208 1.208 22 C 0.005 3.995 23 H 0.093 0.907 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.230 0.770 27 H 0.171 0.829 28 H 0.185 0.815 29 H 0.187 0.813 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -7.162 14.989 -2.983 16.878 hybrid contribution 0.390 -1.285 0.850 1.589 sum -6.771 13.704 -2.134 15.434 Atomic orbital electron populations 1.22007 0.94238 1.01992 1.02604 1.21500 0.92656 0.80568 0.98232 1.45672 1.51271 1.12256 1.25268 1.17464 0.80370 0.83792 0.81986 1.90725 1.37852 1.77336 1.35736 1.20472 1.03059 0.96161 0.96750 1.21157 1.00069 0.91030 0.98975 1.25461 1.06456 1.02674 1.02871 1.82952 1.48375 1.06576 1.18589 1.25678 1.03380 1.01350 1.04266 1.23237 1.00547 0.98905 0.95860 1.21152 0.89932 0.99898 0.83753 1.44434 1.07819 1.78851 1.01776 1.19068 0.89370 1.37375 0.89011 0.90600 1.24753 0.97733 1.02101 0.96010 1.69942 1.24117 1.54171 1.09172 0.86136 0.81953 0.78232 0.79601 1.21631 1.21748 1.20762 1.21881 0.87558 0.94891 0.95170 0.90701 0.91861 0.93187 0.76995 0.82920 0.81514 0.81280 0.90784 0.91832 0.93731 0.93809 0.93902 0.92875 0.95639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 8.53 37.16 0.32 -2.04 16 2 C 0.16 2.85 0.82 -129.66 -0.11 2.74 16 3 N -0.70 -11.83 5.15 -46.75 -0.24 -12.07 16 4 C 0.58 10.27 7.17 -12.62 -0.09 10.18 16 5 O -0.54 -10.94 13.63 5.25 0.07 -10.87 16 6 C -0.15 -2.18 5.98 -104.63 -0.63 -2.80 16 7 C -0.08 -1.09 10.10 -39.02 -0.39 -1.49 16 8 C -0.24 -2.52 11.12 28.86 0.32 -2.20 16 9 S 0.17 1.70 23.02 -107.50 -2.48 -0.78 16 10 C -0.21 -2.58 10.38 29.93 0.31 -2.27 16 11 C -0.15 -2.63 5.98 -24.89 -0.15 -2.78 16 12 C 0.18 4.22 5.36 -3.07 -0.02 4.20 16 13 N -0.60 -15.64 3.39 -170.07 -0.58 -16.22 16 14 C -0.22 -6.30 10.28 -15.06 -0.15 -6.46 16 15 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 16 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 17 N -0.93 -27.17 10.31 55.49 0.57 -26.60 16 18 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 C 0.13 2.96 6.13 -2.53 -0.02 2.94 16 23 H 0.07 1.29 6.31 -51.93 -0.33 0.96 16 24 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.40 5.97 7.00 -40.82 -0.29 5.68 16 27 H 0.15 1.96 8.06 -52.48 -0.42 1.53 16 28 H 0.17 1.27 8.06 -52.48 -0.42 0.85 16 29 H 0.17 1.82 7.01 -52.49 -0.37 1.46 16 30 H 0.07 1.23 8.01 -51.93 -0.42 0.82 16 31 H 0.06 0.98 8.07 -51.93 -0.42 0.56 16 32 H 0.04 1.15 7.38 -51.93 -0.38 0.77 16 33 H 0.04 1.16 7.51 -51.93 -0.39 0.77 16 34 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.05 1.29 6.58 -51.93 -0.34 0.95 16 36 H 0.03 0.57 8.03 -51.93 -0.42 0.16 16 LS Contribution 308.14 15.07 4.64 4.64 Total: -1.00 -32.60 308.14 -8.31 -40.91 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.58 Total: 3.75 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -0.70 Total: -0.35 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.25 Total: -54.89 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.07 Total: -10.87 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.48 Total: -0.78 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.60 -8.31 -40.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046122690.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.997 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds