Wall clock time and date at job start Tue Mar 31 2020 01:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 110.88653 * 2 1 4 4 C 1.34775 * 120.00088 * 59.30047 * 3 2 1 5 5 O 1.21635 * 119.99817 * 359.97438 * 4 3 2 6 6 C 1.47192 * 119.99762 * 180.02562 * 4 3 2 7 7 C 1.44425 * 123.45613 * 179.97438 * 6 4 3 8 8 C 1.32773 * 113.08196 * 179.97438 * 7 6 4 9 9 S 1.75499 * 110.57722 * 359.97438 * 8 7 6 10 10 C 1.36003 * 123.46140 * 359.70277 * 6 4 3 11 11 C 1.55165 * 111.00426 * 236.07708 * 2 1 3 12 12 C 1.54320 * 102.94006 * 206.42285 * 11 2 1 13 13 N 1.47023 * 107.27576 * 22.19194 * 12 11 2 14 14 C 1.36933 * 125.64851 * 181.02277 * 13 12 11 15 15 H 1.08000 * 119.99877 * 180.02562 * 14 13 12 16 16 C 1.38811 * 120.00137 * 0.04163 * 14 13 12 17 17 N 1.31612 * 120.00209 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99839 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47162 * 90.00089 * 18 16 14 20 20 H 1.48510 * 109.47164 * 210.00153 * 18 16 14 21 21 H 1.48500 * 109.47352 * 330.00138 * 18 16 14 22 22 C 1.47424 * 108.70235 * 1.05739 * 13 12 11 23 23 H 1.09002 * 109.47153 * 297.57234 * 1 2 3 24 24 H 1.09001 * 109.46832 * 177.57425 * 1 2 3 25 25 H 1.09004 * 109.47261 * 57.57406 * 1 2 3 26 26 H 0.97008 * 119.99808 * 239.30462 * 3 2 1 27 27 H 1.08003 * 123.46033 * 359.97438 * 7 6 4 28 28 H 1.08004 * 124.71035 * 180.02562 * 8 7 6 29 29 H 1.07990 * 124.59749 * 359.97438 * 10 6 4 30 30 H 1.08990 * 110.71702 * 324.78417 * 11 2 1 31 31 H 1.09003 * 110.71788 * 88.06328 * 11 2 1 32 32 H 1.09006 * 109.88205 * 262.77151 * 12 11 2 33 33 H 1.09004 * 109.88414 * 141.61192 * 12 11 2 34 34 H 0.97000 * 120.00659 * 179.97438 * 17 16 14 35 35 H 1.08992 * 110.37079 * 217.03221 * 22 13 12 36 36 H 1.09005 * 110.45662 * 94.75392 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.7358 2.2108 1.0036 5 8 1.0162 1.8345 1.9091 6 6 2.2602 3.5862 1.0032 7 6 1.9689 4.5496 2.0390 8 6 2.5486 5.7262 1.8334 9 16 3.4845 5.7017 0.3490 10 6 3.0730 4.0786 0.0303 11 6 2.0861 -0.8084 -1.2020 12 6 3.4674 -1.2744 -0.6956 13 7 3.4272 -1.2427 0.7738 14 6 4.4641 -1.5660 1.6076 15 1 4.3334 -1.5108 2.6783 16 6 5.6833 -1.9644 1.0769 17 7 5.8429 -2.0310 -0.2278 18 14 7.0979 -2.4048 2.2146 19 1 7.0446 -3.8543 2.5327 20 1 8.3866 -2.0918 1.5461 21 1 6.9874 -1.6182 3.4693 22 6 2.0853 -0.8061 1.2006 23 1 -0.3633 0.4757 0.9110 24 1 -0.3633 -1.0268 -0.0435 25 1 -0.3634 0.5511 -0.8675 26 1 2.6259 1.6690 -0.7224 27 1 1.3436 4.3350 2.8931 28 1 2.4576 6.5796 2.4891 29 1 3.4113 3.5175 -0.8281 30 1 1.4468 -1.6637 -1.4203 31 1 2.1922 -0.1707 -2.0796 32 1 4.2426 -0.6001 -1.0598 33 1 3.6651 -2.2898 -1.0392 34 1 6.6949 -2.3090 -0.5987 35 1 2.1560 -0.1712 2.0837 36 1 1.4509 -1.6688 1.4043 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046122690.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:14 Heat of formation + Delta-G solvation = 3.334054 kcal Electronic energy + Delta-G solvation = -20050.818752 eV Core-core repulsion = 17047.527373 eV Total energy + Delta-G solvation = -3003.291379 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.32896 -39.17903 -37.57922 -35.68945 -33.74879 -31.96740 -30.57518 -30.10305 -27.53452 -26.10485 -25.33648 -22.99401 -22.08042 -20.69867 -20.09784 -19.17191 -18.62794 -17.88005 -17.01990 -16.64443 -16.08274 -15.73882 -15.57015 -15.16598 -14.44009 -14.22350 -13.96888 -13.84055 -13.79229 -13.52619 -13.36192 -13.35969 -13.05644 -12.83383 -12.76864 -12.18172 -12.06081 -12.05034 -11.94084 -11.71269 -11.55684 -10.73125 -10.67037 -10.08409 -9.94533 -9.31723 -8.87639 -7.87428 -5.21015 -0.18388 0.64893 0.97433 1.05359 1.42233 1.43690 1.52482 2.21338 2.44233 2.46950 3.30685 3.55103 3.69078 3.87297 4.03368 4.04819 4.17890 4.34981 4.46242 4.62984 4.68227 4.79420 4.85126 4.85890 4.91633 5.01548 5.06870 5.15589 5.29548 5.36780 5.41013 5.62985 5.68453 5.76130 6.18470 6.62485 7.10371 7.29300 7.75690 8.40223 9.22511 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.015762 B = 0.005751 C = 0.004823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.047681 B = 4867.367176 C = 5804.319674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.166 3.834 3 N -0.694 5.694 4 C 0.573 3.427 5 O -0.574 6.574 6 C -0.182 4.182 7 C -0.112 4.112 8 C -0.230 4.230 9 S 0.241 5.759 10 C -0.215 4.215 11 C -0.128 4.128 12 C 0.185 3.815 13 N -0.620 5.620 14 C -0.242 4.242 15 H 0.067 0.933 16 C -0.058 4.058 17 N -0.945 5.945 18 Si 0.973 3.027 19 H -0.285 1.285 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.129 3.871 23 H 0.056 0.944 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.405 0.595 27 H 0.144 0.856 28 H 0.198 0.802 29 H 0.182 0.818 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.018 0.982 33 H 0.010 0.990 34 H 0.248 0.752 35 H 0.026 0.974 36 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.715 16.081 -3.846 18.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.079 3.921 3 N -0.344 5.344 4 C 0.360 3.640 5 O -0.456 6.456 6 C -0.200 4.200 7 C -0.140 4.140 8 C -0.365 4.365 9 S 0.506 5.494 10 C -0.353 4.353 11 C -0.166 4.166 12 C 0.060 3.940 13 N -0.346 5.346 14 C -0.372 4.372 15 H 0.085 0.915 16 C -0.252 4.252 17 N -0.594 5.594 18 Si 0.802 3.198 19 H -0.212 1.212 20 H -0.214 1.214 21 H -0.202 1.202 22 C 0.002 3.998 23 H 0.075 0.925 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.241 0.759 27 H 0.162 0.838 28 H 0.215 0.785 29 H 0.199 0.801 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.036 0.964 33 H 0.028 0.972 34 H 0.058 0.942 35 H 0.044 0.956 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -7.128 16.810 -3.977 18.687 hybrid contribution 0.427 -1.765 1.167 2.159 sum -6.701 15.045 -2.810 16.708 Atomic orbital electron populations 1.21927 0.91860 1.03174 1.02889 1.21385 0.94212 0.80685 0.95802 1.45652 1.51421 1.11693 1.25633 1.17972 0.79738 0.84970 0.81319 1.90693 1.39583 1.78326 1.36989 1.20373 1.05507 0.95191 0.98906 1.21159 1.01760 0.91990 0.99122 1.25865 1.04773 1.02485 1.03391 1.82758 1.46124 1.03567 1.16912 1.25976 1.02206 1.03271 1.03862 1.23114 0.96904 1.00031 0.96574 1.20954 0.92886 0.97492 0.82641 1.44673 1.08471 1.78812 1.02667 1.19312 0.90754 1.37825 0.89260 0.91535 1.25511 0.99879 1.02239 0.97540 1.70134 1.24343 1.54529 1.10423 0.85160 0.78798 0.77936 0.77931 1.21152 1.21410 1.20227 1.21982 0.86414 0.95050 0.96323 0.92460 0.90436 0.90610 0.75898 0.83805 0.78468 0.80117 0.88819 0.88400 0.96365 0.97205 0.94244 0.95556 0.95609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.17 8.53 71.98 0.61 -3.56 16 2 C 0.17 5.90 0.82 5.00 0.00 5.91 16 3 N -0.69 -23.35 5.15 -420.06 -2.16 -25.51 16 4 C 0.57 20.65 7.17 86.60 0.62 21.27 16 5 O -0.57 -24.27 13.63 -4.14 -0.06 -24.32 16 6 C -0.18 -5.34 5.98 -19.87 -0.12 -5.46 16 7 C -0.11 -2.89 10.10 22.67 0.23 -2.66 16 8 C -0.23 -4.27 11.12 66.64 0.74 -3.53 16 9 S 0.24 4.05 23.02 -56.49 -1.30 2.75 16 10 C -0.21 -4.94 10.38 67.30 0.70 -4.24 16 11 C -0.13 -4.36 5.98 31.78 0.19 -4.17 16 12 C 0.19 8.91 5.36 86.73 0.47 9.38 16 13 N -0.62 -33.06 3.39 -691.99 -2.35 -35.41 16 14 C -0.24 -14.30 10.28 84.03 0.86 -13.44 16 15 H 0.07 3.93 7.83 -2.91 -0.02 3.90 16 16 C -0.06 -3.39 5.49 84.86 0.47 -2.93 16 17 N -0.95 -56.54 10.31 21.65 0.22 -56.32 16 18 Si 0.97 47.05 29.55 68.60 2.03 49.07 16 19 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 20 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 21 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 22 C 0.13 5.91 6.13 86.86 0.53 6.44 16 23 H 0.06 1.94 6.31 -2.39 -0.02 1.93 16 24 H 0.08 2.07 8.11 -2.39 -0.02 2.05 16 25 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 26 H 0.40 11.82 7.00 -92.70 -0.65 11.17 16 27 H 0.14 3.83 8.06 -2.91 -0.02 3.80 16 28 H 0.20 2.32 8.06 -2.91 -0.02 2.30 16 29 H 0.18 3.56 7.01 -2.92 -0.02 3.54 16 30 H 0.09 2.88 8.01 -2.39 -0.02 2.86 16 31 H 0.10 2.71 8.07 -2.39 -0.02 2.69 16 32 H 0.02 0.96 7.38 -2.38 -0.02 0.94 16 33 H 0.01 0.53 7.51 -2.38 -0.02 0.51 16 34 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 35 H 0.03 1.34 6.58 -2.39 -0.02 1.32 16 36 H 0.03 1.18 8.03 -2.38 -0.02 1.16 16 Total: -1.00 -73.33 308.14 2.14 -71.20 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.45 Total: 15.54 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: 5.31 Total: 3.00 kcal Atomic # 7 Polarization: -112.95 SS G_CDS: -4.29 Total: -117.24 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.06 Total: -24.32 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.07 kcal Atomic # 16 Polarization: 4.05 SS G_CDS: -1.30 Total: 2.75 kcal Total: -73.33 2.14 -71.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046122690.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.531 kcal (2) G-P(sol) polarization free energy of solvation -73.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds