Wall clock time and date at job start Tue Mar 31 2020 01:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46900 * 109.47217 * 10.22130 * 3 2 1 5 5 C 1.48430 * 111.04246 * 285.44017 * 4 3 2 6 6 C 1.54374 * 104.62656 * 200.98377 * 5 4 3 7 7 H 1.09002 * 118.15458 * 244.16878 * 6 5 4 8 8 C 1.54122 * 105.06684 * 23.84040 * 6 5 4 9 9 H 1.08999 * 121.75953 * 222.15018 * 8 6 5 10 10 C 1.48559 * 111.00322 * 170.00321 * 4 3 2 11 11 C 1.53003 * 118.13162 * 87.25584 * 6 5 4 12 12 H 1.09005 * 117.44328 * 15.92930 * 11 6 5 13 13 N 1.46504 * 117.44507 * 160.68435 * 11 6 5 14 14 C 1.34771 * 119.99670 * 205.15692 * 13 11 6 15 15 O 1.21284 * 120.00353 * 0.02562 * 14 13 11 16 16 C 1.50703 * 119.99952 * 179.97438 * 14 13 11 17 17 S 1.80990 * 109.47384 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00278 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99888 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00452 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00292 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99660 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 269.99524 * 22 20 18 24 24 H 1.48503 * 109.47261 * 149.99704 * 22 20 18 25 25 H 1.48500 * 109.47454 * 29.99697 * 22 20 18 26 26 H 4.40886 * 5.52193 * 179.97438 * 4 1 2 27 27 H 1.09000 * 109.47657 * 250.21988 * 3 2 1 28 28 H 1.09001 * 109.47315 * 130.21619 * 3 2 1 29 29 H 1.09000 * 110.37795 * 82.19753 * 5 4 3 30 30 H 1.09003 * 110.41894 * 319.78165 * 5 4 3 31 31 H 1.09000 * 110.41295 * 40.24945 * 10 4 3 32 32 H 1.09010 * 110.50584 * 277.86861 * 10 4 3 33 33 H 0.96994 * 119.99668 * 25.16072 * 13 11 6 34 34 H 1.09001 * 109.47050 * 59.99941 * 16 14 13 35 35 H 1.08999 * 109.47014 * 300.00996 * 16 14 13 36 36 H 0.96997 * 119.99773 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1363 -1.3621 -0.2458 5 6 2.9666 -2.2146 0.9574 6 6 3.9682 -3.3725 0.7591 7 1 3.5720 -4.3819 0.6481 8 6 5.0432 -2.8136 -0.1934 9 1 5.4475 -3.4069 -1.0135 10 6 4.6015 -1.3647 -0.4910 11 6 5.4044 -3.1759 1.2486 12 1 5.5911 -2.3550 1.9410 13 7 6.2161 -4.3770 1.4601 14 6 7.2459 -4.3499 2.3291 15 8 7.5003 -3.3314 2.9365 16 6 8.0806 -5.5856 2.5471 17 16 9.3741 -5.2332 3.7630 18 6 10.1742 -6.8019 3.8220 19 1 9.8152 -7.6146 3.2079 20 6 11.2657 -6.9933 4.6577 21 7 11.8637 -8.1652 4.7014 22 14 11.8861 -5.5879 5.7203 23 1 12.9098 -4.8155 4.9714 24 1 12.4895 -6.1351 6.9621 25 1 10.7525 -4.6957 6.0725 26 1 -1.0498 -0.0004 0.0001 27 1 3.0093 0.3486 0.9670 28 1 3.0091 0.6644 -0.7847 29 1 1.9476 -2.5981 1.0102 30 1 3.2092 -1.6524 1.8591 31 1 5.1010 -0.6688 0.1831 32 1 4.8155 -1.1075 -1.5285 33 1 6.0124 -5.1916 0.9746 34 1 8.5391 -5.8852 1.6047 35 1 7.4464 -6.3921 2.9151 36 1 12.6263 -8.2990 5.2857 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113890832.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:37 Heat of formation + Delta-G solvation = 62.109695 kcal Electronic energy + Delta-G solvation = -18224.386507 eV Core-core repulsion = 15223.643831 eV Total energy + Delta-G solvation = -3000.742676 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.60834 -38.95650 -35.96797 -33.67394 -32.46410 -32.13968 -29.38650 -28.80797 -27.27373 -25.64017 -23.04022 -21.21179 -20.69264 -20.54161 -18.46097 -17.89262 -17.13398 -16.51641 -15.92504 -15.26776 -15.12129 -14.99488 -14.92011 -14.09771 -13.73235 -13.63045 -13.25702 -13.00686 -12.81790 -12.54293 -12.47020 -12.19172 -11.77507 -11.29486 -11.06158 -11.01586 -10.88096 -10.67788 -10.50485 -10.27408 -9.88691 -9.64820 -9.02999 -8.93106 -8.83822 -8.54195 -6.95359 -6.31188 -4.03523 2.34655 2.52051 2.63543 2.73214 3.14337 3.31351 3.44931 3.48362 3.54922 3.73066 4.06882 4.30071 4.31881 4.40335 4.58027 4.66606 4.74479 4.90452 4.95410 5.04229 5.07801 5.12301 5.14484 5.28529 5.51305 5.58176 5.63351 5.70471 5.78455 5.83128 5.96213 6.29999 6.41340 6.51617 7.29502 7.47844 7.91786 8.36568 8.39387 9.14758 10.77965 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.052212 B = 0.002696 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.143043 B =10383.281077 C =10580.576691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.179 4.179 3 C 0.150 3.850 4 N -0.508 5.508 5 C 0.065 3.935 6 C -0.173 4.173 7 H 0.121 0.879 8 C -0.175 4.175 9 H 0.122 0.878 10 C 0.064 3.936 11 C 0.123 3.877 12 H 0.134 0.866 13 N -0.707 5.707 14 C 0.537 3.463 15 O -0.515 6.515 16 C -0.124 4.124 17 S -0.140 6.140 18 C -0.522 4.522 19 H 0.089 0.911 20 C 0.095 3.905 21 N -0.879 5.879 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 H 0.217 0.783 27 H 0.064 0.936 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.403 0.597 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.605 12.934 -11.041 25.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.180 4.180 3 C 0.023 3.977 4 N -0.232 5.232 5 C -0.063 4.063 6 C -0.193 4.193 7 H 0.139 0.861 8 C -0.196 4.196 9 H 0.140 0.860 10 C -0.063 4.063 11 C 0.015 3.985 12 H 0.152 0.848 13 N -0.358 5.358 14 C 0.323 3.677 15 O -0.389 6.389 16 C -0.275 4.275 17 S 0.086 5.914 18 C -0.670 4.670 19 H 0.107 0.893 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 H 0.234 0.766 27 H 0.082 0.918 28 H 0.118 0.882 29 H 0.107 0.893 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.237 0.763 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.287 14.313 -10.390 26.169 hybrid contribution 0.216 -1.024 0.083 1.050 sum -19.071 13.290 -10.307 25.428 Atomic orbital electron populations 1.24892 0.95892 0.99502 1.01241 1.22754 0.94075 1.00919 1.00212 1.19154 0.85613 0.91251 1.01706 1.65507 1.14336 1.09018 1.34388 1.22607 0.99395 0.92869 0.91401 1.23872 0.89793 1.00121 1.05548 0.86088 1.23934 1.03876 0.96916 0.94841 0.86023 1.22592 0.86770 0.94672 1.02314 1.21648 0.90275 0.90843 0.95686 0.84835 1.45312 1.31942 1.13258 1.45291 1.20334 0.79440 0.90022 0.77879 1.90699 1.68368 1.33198 1.46641 1.23277 1.01032 0.97919 1.05227 1.84798 1.34132 1.20630 1.51815 1.22307 1.17993 0.95902 1.30767 0.89336 1.24719 0.95016 0.95848 0.95766 1.69937 1.21351 1.22327 1.37970 0.86731 0.81461 0.82966 0.80663 1.19187 1.19914 1.15929 0.76595 0.91771 0.88209 0.89338 0.92962 0.92776 0.88968 0.76259 0.88285 0.88245 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.54 19.25 29.55 0.57 -0.97 16 2 C -0.18 -1.60 13.25 -37.12 -0.49 -2.09 16 3 C 0.15 1.16 5.33 -6.61 -0.04 1.12 16 4 N -0.51 -4.47 5.31 -233.59 -1.24 -5.71 16 5 C 0.06 0.57 5.90 -2.26 -0.01 0.56 16 6 C -0.17 -1.56 7.04 -89.31 -0.63 -2.19 16 7 H 0.12 1.00 8.14 -51.93 -0.42 0.57 16 8 C -0.17 -1.59 7.05 -89.31 -0.63 -2.22 16 9 H 0.12 1.04 8.14 -51.93 -0.42 0.61 16 10 C 0.06 0.52 6.26 -2.19 -0.01 0.51 16 11 C 0.12 1.37 5.98 -67.92 -0.41 0.96 16 12 H 0.13 1.72 7.40 -51.93 -0.38 1.34 16 13 N -0.71 -8.71 5.56 -53.80 -0.30 -9.01 16 14 C 0.54 9.21 7.85 -10.99 -0.09 9.13 16 15 O -0.52 -10.79 15.43 5.55 0.09 -10.71 16 16 C -0.12 -2.32 6.16 36.01 0.22 -2.10 16 17 S -0.14 -3.50 18.55 -107.50 -1.99 -5.49 16 18 C -0.52 -14.88 10.04 30.94 0.31 -14.57 16 19 H 0.09 2.63 8.03 -52.48 -0.42 2.20 16 20 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 21 N -0.88 -26.35 13.97 55.49 0.78 -25.58 16 22 Si 0.86 21.60 27.74 -169.99 -4.71 16.89 16 23 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 26 H 0.22 0.96 7.80 -54.10 -0.42 0.53 16 27 H 0.06 0.45 7.77 -51.93 -0.40 0.05 16 28 H 0.10 0.63 8.08 -51.93 -0.42 0.21 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.46 7.75 -51.93 -0.40 0.06 16 31 H 0.05 0.44 8.00 -51.93 -0.42 0.02 16 32 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.40 3.81 8.83 -40.82 -0.36 3.45 16 34 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 35 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 36 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 327.91 15.07 4.94 4.94 Total: -1.00 -33.77 327.91 -8.66 -42.44 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -4.92 Total: 1.41 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -1.30 Total: -9.18 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: -0.76 Total: -40.29 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.89 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.77 -8.66 -42.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113890832.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.546 kcal (2) G-P(sol) polarization free energy of solvation -33.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds