Wall clock time and date at job start Tue Mar 31 2020 01:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46900 * 109.47217 * 10.22130 * 3 2 1 5 5 C 1.48430 * 111.04246 * 285.44017 * 4 3 2 6 6 C 1.54374 * 104.62656 * 200.98377 * 5 4 3 7 7 H 1.09002 * 118.15458 * 244.16878 * 6 5 4 8 8 C 1.54122 * 105.06684 * 23.84040 * 6 5 4 9 9 H 1.08999 * 121.75953 * 222.15018 * 8 6 5 10 10 C 1.48559 * 111.00322 * 170.00321 * 4 3 2 11 11 C 1.53003 * 118.13162 * 87.25584 * 6 5 4 12 12 H 1.09005 * 117.44328 * 15.92930 * 11 6 5 13 13 N 1.46504 * 117.44507 * 160.68435 * 11 6 5 14 14 C 1.34771 * 119.99670 * 205.15692 * 13 11 6 15 15 O 1.21284 * 120.00353 * 0.02562 * 14 13 11 16 16 C 1.50703 * 119.99952 * 179.97438 * 14 13 11 17 17 S 1.80990 * 109.47384 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00278 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99888 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00452 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00292 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99660 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 269.99524 * 22 20 18 24 24 H 1.48503 * 109.47261 * 149.99704 * 22 20 18 25 25 H 1.48500 * 109.47454 * 29.99697 * 22 20 18 26 26 H 4.40886 * 5.52193 * 179.97438 * 4 1 2 27 27 H 1.09000 * 109.47657 * 250.21988 * 3 2 1 28 28 H 1.09001 * 109.47315 * 130.21619 * 3 2 1 29 29 H 1.09000 * 110.37795 * 82.19753 * 5 4 3 30 30 H 1.09003 * 110.41894 * 319.78165 * 5 4 3 31 31 H 1.09000 * 110.41295 * 40.24945 * 10 4 3 32 32 H 1.09010 * 110.50584 * 277.86861 * 10 4 3 33 33 H 0.96994 * 119.99668 * 25.16072 * 13 11 6 34 34 H 1.09001 * 109.47050 * 59.99941 * 16 14 13 35 35 H 1.08999 * 109.47014 * 300.00996 * 16 14 13 36 36 H 0.96997 * 119.99773 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1363 -1.3621 -0.2458 5 6 2.9666 -2.2146 0.9574 6 6 3.9682 -3.3725 0.7591 7 1 3.5720 -4.3819 0.6481 8 6 5.0432 -2.8136 -0.1934 9 1 5.4475 -3.4069 -1.0135 10 6 4.6015 -1.3647 -0.4910 11 6 5.4044 -3.1759 1.2486 12 1 5.5911 -2.3550 1.9410 13 7 6.2161 -4.3770 1.4601 14 6 7.2459 -4.3499 2.3291 15 8 7.5003 -3.3314 2.9365 16 6 8.0806 -5.5856 2.5471 17 16 9.3741 -5.2332 3.7630 18 6 10.1742 -6.8019 3.8220 19 1 9.8152 -7.6146 3.2079 20 6 11.2657 -6.9933 4.6577 21 7 11.8637 -8.1652 4.7014 22 14 11.8861 -5.5879 5.7203 23 1 12.9098 -4.8155 4.9714 24 1 12.4895 -6.1351 6.9621 25 1 10.7525 -4.6957 6.0725 26 1 -1.0498 -0.0004 0.0001 27 1 3.0093 0.3486 0.9670 28 1 3.0091 0.6644 -0.7847 29 1 1.9476 -2.5981 1.0102 30 1 3.2092 -1.6524 1.8591 31 1 5.1010 -0.6688 0.1831 32 1 4.8155 -1.1075 -1.5285 33 1 6.0124 -5.1916 0.9746 34 1 8.5391 -5.8852 1.6047 35 1 7.4464 -6.3921 2.9151 36 1 12.6263 -8.2990 5.2857 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113890832.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:37 Heat of formation + Delta-G solvation = 37.813834 kcal Electronic energy + Delta-G solvation = -18225.440055 eV Core-core repulsion = 15223.643831 eV Total energy + Delta-G solvation = -3001.796224 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.46550 -40.16597 -36.79918 -34.68838 -34.59687 -32.97951 -30.74611 -29.48779 -28.05391 -27.79920 -23.86399 -22.03470 -21.85095 -21.33967 -19.87804 -19.00536 -18.11004 -17.88483 -17.10988 -16.74001 -16.48436 -15.98210 -15.80408 -15.56175 -15.06923 -14.83092 -14.34601 -14.22225 -13.83581 -13.75263 -13.35113 -13.20277 -13.04304 -12.97339 -12.65733 -12.54261 -11.94474 -11.87373 -11.52495 -11.17185 -11.15267 -11.08855 -10.98215 -10.54546 -9.85648 -9.58733 -9.00080 -8.51601 -6.22616 0.96200 1.31575 1.42755 1.45169 1.52999 1.74467 1.92112 2.05833 2.24936 2.62355 2.69006 2.86605 3.06952 3.47023 3.54613 3.67100 3.77484 3.82031 4.06787 4.22508 4.22891 4.35846 4.41467 4.45720 4.49367 4.58904 4.75583 4.86516 5.02660 5.08339 5.13131 5.41482 5.65439 5.70685 5.86079 6.11658 6.38182 6.71154 6.93489 7.11540 8.60648 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.052212 B = 0.002696 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.143043 B =10383.281077 C =10580.576691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.215 4.215 3 C 0.148 3.852 4 N -0.514 5.514 5 C 0.064 3.936 6 C -0.158 4.158 7 H 0.136 0.864 8 C -0.162 4.162 9 H 0.134 0.866 10 C 0.063 3.937 11 C 0.099 3.901 12 H 0.113 0.887 13 N -0.682 5.682 14 C 0.542 3.458 15 O -0.559 6.559 16 C -0.111 4.111 17 S -0.175 6.175 18 C -0.529 4.529 19 H 0.063 0.937 20 C 0.044 3.956 21 N -0.916 5.916 22 Si 0.915 3.085 23 H -0.262 1.262 24 H -0.260 1.260 25 H -0.236 1.236 26 H 0.244 0.756 27 H 0.067 0.933 28 H 0.113 0.887 29 H 0.090 0.910 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.106 0.894 33 H 0.420 0.580 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.156 13.812 -12.113 28.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.215 4.215 3 C 0.021 3.979 4 N -0.238 5.238 5 C -0.064 4.064 6 C -0.178 4.178 7 H 0.153 0.847 8 C -0.183 4.183 9 H 0.152 0.848 10 C -0.064 4.064 11 C -0.008 4.008 12 H 0.131 0.869 13 N -0.334 5.334 14 C 0.328 3.672 15 O -0.437 6.437 16 C -0.261 4.261 17 S 0.052 5.948 18 C -0.676 4.676 19 H 0.082 0.918 20 C -0.161 4.161 21 N -0.554 5.554 22 Si 0.737 3.263 23 H -0.187 1.187 24 H -0.184 1.184 25 H -0.160 1.160 26 H 0.260 0.740 27 H 0.085 0.915 28 H 0.130 0.870 29 H 0.109 0.891 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.124 0.876 33 H 0.257 0.743 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.879 15.171 -11.504 28.257 hybrid contribution 0.519 -1.301 0.287 1.429 sum -20.361 13.871 -11.218 27.070 Atomic orbital electron populations 1.25678 0.96817 0.98316 1.00174 1.23217 0.94925 1.02066 1.01296 1.19226 0.85369 0.90912 1.02371 1.65516 1.14492 1.09655 1.34169 1.22617 0.99367 0.92873 0.91498 1.23898 0.88802 1.00935 1.04129 0.84660 1.23998 1.02837 0.97743 0.93699 0.84802 1.22659 0.86547 0.94084 1.03147 1.21658 0.91926 0.89956 0.97229 0.86928 1.44988 1.30244 1.14541 1.43597 1.19967 0.80173 0.88642 0.78414 1.90690 1.69875 1.34347 1.48769 1.23255 0.99528 0.99430 1.03929 1.84724 1.36549 1.18683 1.54854 1.22456 1.18258 0.96854 1.30052 0.91840 1.25577 0.95347 0.98123 0.97074 1.70016 1.22175 1.24102 1.39131 0.85862 0.80868 0.80081 0.79526 1.18684 1.18405 1.16037 0.74001 0.91494 0.86950 0.89146 0.93415 0.92877 0.87565 0.74251 0.86520 0.86550 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.65 19.25 74.32 1.43 -1.22 16 2 C -0.21 -3.54 13.25 31.13 0.41 -3.13 16 3 C 0.15 2.09 5.33 84.50 0.45 2.54 16 4 N -0.51 -8.10 5.31 -892.93 -4.74 -12.84 16 5 C 0.06 1.03 5.90 86.47 0.51 1.54 16 6 C -0.16 -2.49 7.04 -9.95 -0.07 -2.56 16 7 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 8 C -0.16 -2.57 7.05 -9.95 -0.07 -2.64 16 9 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 10 C 0.06 0.90 6.26 86.45 0.54 1.45 16 11 C 0.10 2.06 5.98 44.99 0.27 2.33 16 12 H 0.11 2.89 7.40 -2.38 -0.02 2.87 16 13 N -0.68 -15.48 5.56 -442.51 -2.46 -17.94 16 14 C 0.54 17.98 7.85 87.66 0.69 18.67 16 15 O -0.56 -23.32 15.43 -3.04 -0.05 -23.37 16 16 C -0.11 -4.01 6.16 71.24 0.44 -3.57 16 17 S -0.17 -8.69 18.55 -56.49 -1.05 -9.73 16 18 C -0.53 -30.44 10.04 67.95 0.68 -29.76 16 19 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 20 C 0.04 2.58 5.50 84.86 0.47 3.05 16 21 N -0.92 -55.48 13.97 21.65 0.30 -55.18 16 22 Si 0.91 44.70 27.74 68.60 1.90 46.60 16 23 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 25 H -0.24 -11.52 6.74 99.48 0.67 -10.85 16 26 H 0.24 1.54 7.80 -4.43 -0.03 1.51 16 27 H 0.07 0.89 7.77 -2.39 -0.02 0.87 16 28 H 0.11 1.24 8.08 -2.39 -0.02 1.23 16 29 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 0.81 7.75 -2.39 -0.02 0.79 16 31 H 0.05 0.78 8.00 -2.39 -0.02 0.77 16 32 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.42 6.72 8.83 -92.71 -0.82 5.90 16 34 H 0.12 3.84 8.14 -2.39 -0.02 3.82 16 35 H 0.12 3.85 8.14 -2.40 -0.02 3.83 16 36 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -73.12 327.91 -0.11 -73.24 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.23 Total: 12.52 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: 5.75 Total: -13.30 kcal Atomic # 7 Polarization: -79.06 SS G_CDS: -6.90 Total: -85.96 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.05 Total: -23.37 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.90 Total: 46.60 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.05 Total: -9.73 kcal Total: -73.12 -0.11 -73.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113890832.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.050 kcal (2) G-P(sol) polarization free energy of solvation -73.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds