Wall clock time and date at job start Tue Mar 31 2020 01:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38195 * 120.84252 * 2 1 4 4 C 1.38709 * 119.28575 * 180.27683 * 3 2 1 5 5 F 1.35098 * 119.49059 * 179.76159 * 4 3 2 6 6 N 1.32171 * 121.02114 * 359.73478 * 4 3 2 7 7 C 1.31667 * 121.83882 * 0.02562 * 6 4 3 8 8 C 1.39550 * 120.59299 * 359.97320 * 7 6 4 9 9 C 1.47735 * 120.52993 * 180.02562 * 8 7 6 10 10 O 1.21571 * 119.99723 * 154.24589 * 9 8 7 11 11 N 1.34768 * 120.00093 * 334.24474 * 9 8 7 12 12 C 1.47580 * 134.49559 * 174.28429 * 11 9 8 13 13 C 1.53946 * 86.12025 * 155.36203 * 12 11 9 14 14 O 1.42897 * 113.73943 * 269.15961 * 13 12 11 15 15 C 1.50698 * 113.74418 * 137.95579 * 13 12 11 16 16 H 1.08000 * 119.99440 * 1.92383 * 15 13 12 17 17 C 1.37872 * 120.00245 * 181.93009 * 15 13 12 18 18 N 1.31517 * 119.99717 * 359.97438 * 17 15 13 19 19 Si 1.86796 * 120.00259 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47369 * 179.97438 * 19 17 15 21 21 H 1.48511 * 109.46762 * 299.99449 * 19 17 15 22 22 H 1.48499 * 109.47276 * 59.99079 * 19 17 15 23 23 C 1.47816 * 134.45384 * 354.15879 * 11 9 8 24 24 H 1.08994 * 109.47110 * 273.89313 * 1 2 3 25 25 H 1.09007 * 109.46748 * 33.89057 * 1 2 3 26 26 H 1.09000 * 109.47079 * 153.88847 * 1 2 3 27 27 H 1.07998 * 120.35370 * 0.02562 * 3 2 1 28 28 H 1.07999 * 119.70479 * 180.02562 * 7 6 4 29 29 H 1.09002 * 113.76855 * 41.06020 * 12 11 9 30 30 H 1.08997 * 113.87296 * 269.67794 * 12 11 9 31 31 H 0.96706 * 113.99937 * 178.07891 * 14 13 12 32 32 H 0.97000 * 119.99929 * 180.02562 * 18 17 15 33 33 H 1.08999 * 113.77293 * 90.38045 * 23 11 9 34 34 H 1.08994 * 113.83833 * 318.90642 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2155 1.1865 0.0000 4 6 3.6021 1.1488 -0.0058 5 9 4.2988 2.3063 -0.0108 6 7 4.2522 -0.0019 -0.0061 7 6 3.6200 -1.1569 -0.0015 8 6 2.2253 -1.2031 0.0046 9 6 1.5173 -2.4997 0.0104 10 8 0.3957 -2.5778 0.4729 11 7 2.1149 -3.5960 -0.4969 12 6 1.7661 -5.0286 -0.5596 13 6 2.6856 -5.0912 -1.7927 14 8 2.0084 -4.8520 -3.0280 15 6 3.5653 -6.3142 -1.8321 16 1 3.4882 -7.0600 -1.0548 17 6 4.4685 -6.4809 -2.8604 18 7 4.5620 -5.5727 -3.8071 19 14 5.5584 -7.9971 -2.9097 20 1 6.4342 -7.9385 -4.1075 21 1 6.3967 -8.0441 -1.6848 22 1 4.7104 -9.2144 -2.9761 23 6 3.3820 -3.8451 -1.2161 24 1 -0.3633 0.0698 1.0252 25 1 -0.3633 0.8531 -0.5731 26 1 -0.3633 -0.9228 -0.4523 27 1 1.6952 2.1329 0.0004 28 1 4.1859 -2.0767 -0.0015 29 1 0.7161 -5.2157 -0.7846 30 1 2.1291 -5.6085 0.2890 31 1 2.5877 -4.8614 -3.8023 32 1 5.1972 -5.6901 -4.5308 33 1 4.2216 -4.0751 -0.5603 34 1 3.6197 -3.0891 -1.9645 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119256000.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:52 Heat of formation + Delta-G solvation = -52.092221 kcal Electronic energy + Delta-G solvation = -21713.754164 eV Core-core repulsion = 18141.846145 eV Total energy + Delta-G solvation = -3571.908019 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.101 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.14121 -40.64898 -39.14749 -37.41462 -34.25629 -33.81055 -32.28477 -31.42600 -28.89260 -27.77722 -25.52702 -25.50280 -24.10629 -22.31468 -20.42648 -18.80382 -17.83507 -17.61466 -17.35098 -16.67983 -16.21505 -15.67509 -15.15916 -14.86172 -14.64406 -14.17964 -13.88313 -13.76398 -13.64035 -13.11535 -12.89115 -12.65118 -12.60749 -12.32711 -12.14333 -11.86215 -11.62963 -11.17285 -11.07907 -10.59376 -10.37180 -10.09552 -9.75503 -9.63502 -9.26451 -9.10295 -8.82574 -8.53147 -7.97020 -6.44647 -4.55688 0.52531 0.96375 2.95314 3.13736 3.20302 3.21055 3.30188 3.42420 3.68947 4.14701 4.29379 4.55372 4.62426 4.75113 4.83327 5.22383 5.35483 5.40361 5.54531 5.59423 5.64165 5.83566 5.94962 6.08446 6.24536 6.27693 6.35784 6.43818 6.51625 6.57872 6.99645 7.47660 7.57401 7.74273 8.26106 8.47708 8.52435 9.15859 9.34833 10.62167 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.022586 B = 0.004898 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.399619 B = 5715.589933 C = 6522.414938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.039 3.961 3 C -0.208 4.208 4 C 0.323 3.677 5 F -0.112 7.112 6 N -0.520 5.520 7 C 0.177 3.823 8 C -0.187 4.187 9 C 0.576 3.424 10 O -0.550 6.550 11 N -0.625 5.625 12 C 0.114 3.886 13 C 0.241 3.759 14 O -0.572 6.572 15 C -0.540 4.540 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.897 5.897 19 Si 0.908 3.092 20 H -0.285 1.285 21 H -0.273 1.273 22 H -0.273 1.273 23 C 0.069 3.931 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.152 0.848 28 H 0.177 0.823 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.393 0.607 32 H 0.274 0.726 33 H 0.087 0.913 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.262 9.359 5.241 10.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.030 3.970 3 C -0.229 4.229 4 C 0.170 3.830 5 F -0.091 7.091 6 N -0.235 5.235 7 C 0.019 3.981 8 C -0.192 4.192 9 C 0.365 3.635 10 O -0.431 6.431 11 N -0.357 5.357 12 C -0.007 4.007 13 C 0.200 3.800 14 O -0.384 6.384 15 C -0.578 4.578 16 H 0.090 0.910 17 C -0.129 4.129 18 N -0.537 5.537 19 Si 0.735 3.265 20 H -0.210 1.210 21 H -0.198 1.198 22 H -0.198 1.198 23 C -0.054 4.054 24 H 0.105 0.895 25 H 0.088 0.912 26 H 0.115 0.885 27 H 0.170 0.830 28 H 0.194 0.806 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.247 0.753 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.424 9.636 5.750 11.480 hybrid contribution 0.700 -0.369 -0.442 0.906 sum -1.725 9.267 5.307 10.818 Atomic orbital electron populations 1.21045 0.88463 1.04543 1.03698 1.20304 0.97776 0.90262 0.88632 1.21625 0.92449 1.00332 1.08514 1.18350 0.86829 0.81825 0.96031 1.91621 1.80226 1.44228 1.92998 1.67062 1.41815 0.97699 1.16893 1.23050 0.90773 0.94771 0.89490 1.21025 0.95103 0.94957 1.08103 1.17429 0.85405 0.82516 0.78100 1.90704 1.18565 1.85389 1.48450 1.50175 1.23601 1.07243 1.54724 1.23510 1.01180 0.77712 0.98296 1.19809 0.87382 0.90591 0.82256 1.86064 1.40303 1.94358 1.17652 1.21439 1.19595 1.06382 1.10401 0.90979 1.25066 0.96436 0.96730 0.94705 1.69384 1.37173 1.34419 1.12687 0.86386 0.79935 0.82409 0.77799 1.20993 1.19838 1.19835 1.24551 0.86478 1.00386 0.93948 0.89536 0.91246 0.88519 0.83042 0.80636 0.90797 0.89186 0.75263 0.91525 0.89470 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 9.06 36.01 0.33 -1.19 16 2 C 0.04 0.54 5.94 -103.93 -0.62 -0.07 16 3 C -0.21 -2.57 9.79 -39.42 -0.39 -2.96 16 4 C 0.32 4.61 8.41 -17.23 -0.14 4.46 16 5 F -0.11 -1.52 17.29 2.25 0.04 -1.48 16 6 N -0.52 -8.33 10.36 -13.22 -0.14 -8.47 16 7 C 0.18 2.81 10.03 -17.13 -0.17 2.64 16 8 C -0.19 -3.07 5.82 -104.82 -0.61 -3.68 16 9 C 0.58 11.01 7.52 -12.38 -0.09 10.91 16 10 O -0.55 -11.40 14.88 5.30 0.08 -11.33 16 11 N -0.63 -12.29 3.58 -179.24 -0.64 -12.94 16 12 C 0.11 2.32 8.23 -2.97 -0.02 2.29 16 13 C 0.24 5.45 1.40 -90.84 -0.13 5.33 16 14 O -0.57 -14.07 13.48 -35.23 -0.48 -14.55 16 15 C -0.54 -12.86 8.61 -34.44 -0.30 -13.16 16 16 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 17 C 0.07 1.76 5.39 -17.82 -0.10 1.67 16 18 N -0.90 -21.96 11.20 55.43 0.62 -21.34 16 19 Si 0.91 18.84 29.54 -169.99 -5.02 13.82 16 20 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 23 C 0.07 1.37 5.74 -2.83 -0.02 1.36 16 24 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.07 0.67 8.12 -51.92 -0.42 0.25 16 26 H 0.10 1.47 5.91 -51.93 -0.31 1.17 16 27 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 28 H 0.18 2.67 5.67 -52.49 -0.30 2.38 16 29 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.09 1.64 8.09 -51.93 -0.42 1.22 16 31 H 0.39 9.79 6.60 45.56 0.30 10.09 16 32 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 33 H 0.09 1.62 7.71 -51.93 -0.40 1.22 16 34 H 0.07 1.48 7.93 -51.93 -0.41 1.07 16 LS Contribution 298.07 15.07 4.49 4.49 Total: -1.00 -26.77 298.07 -6.07 -32.85 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -2.77 Total: 11.35 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -2.26 Total: 7.59 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: -0.16 Total: -42.75 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.40 Total: -25.87 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.82 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -26.77 -6.07 -32.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119256000.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.247 kcal (2) G-P(sol) polarization free energy of solvation -26.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds