Wall clock time and date at job start Tue Mar 31 2020 01:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38195 * 120.84252 * 2 1 4 4 C 1.38709 * 119.28575 * 180.27683 * 3 2 1 5 5 F 1.35098 * 119.49059 * 179.76159 * 4 3 2 6 6 N 1.32171 * 121.02114 * 359.73478 * 4 3 2 7 7 C 1.31667 * 121.83882 * 0.02562 * 6 4 3 8 8 C 1.39550 * 120.59299 * 359.97320 * 7 6 4 9 9 C 1.47735 * 120.52993 * 180.02562 * 8 7 6 10 10 O 1.21571 * 119.99723 * 154.24589 * 9 8 7 11 11 N 1.34768 * 120.00093 * 334.24474 * 9 8 7 12 12 C 1.47580 * 134.49559 * 174.28429 * 11 9 8 13 13 C 1.53946 * 86.12025 * 155.36203 * 12 11 9 14 14 O 1.42897 * 113.73943 * 269.15961 * 13 12 11 15 15 C 1.50698 * 113.74418 * 137.95579 * 13 12 11 16 16 H 1.08000 * 119.99440 * 1.92383 * 15 13 12 17 17 C 1.37872 * 120.00245 * 181.93009 * 15 13 12 18 18 N 1.31517 * 119.99717 * 359.97438 * 17 15 13 19 19 Si 1.86796 * 120.00259 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47369 * 179.97438 * 19 17 15 21 21 H 1.48511 * 109.46762 * 299.99449 * 19 17 15 22 22 H 1.48499 * 109.47276 * 59.99079 * 19 17 15 23 23 C 1.47816 * 134.45384 * 354.15879 * 11 9 8 24 24 H 1.08994 * 109.47110 * 273.89313 * 1 2 3 25 25 H 1.09007 * 109.46748 * 33.89057 * 1 2 3 26 26 H 1.09000 * 109.47079 * 153.88847 * 1 2 3 27 27 H 1.07998 * 120.35370 * 0.02562 * 3 2 1 28 28 H 1.07999 * 119.70479 * 180.02562 * 7 6 4 29 29 H 1.09002 * 113.76855 * 41.06020 * 12 11 9 30 30 H 1.08997 * 113.87296 * 269.67794 * 12 11 9 31 31 H 0.96706 * 113.99937 * 178.07891 * 14 13 12 32 32 H 0.97000 * 119.99929 * 180.02562 * 18 17 15 33 33 H 1.08999 * 113.77293 * 90.38045 * 23 11 9 34 34 H 1.08994 * 113.83833 * 318.90642 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2155 1.1865 0.0000 4 6 3.6021 1.1488 -0.0058 5 9 4.2988 2.3063 -0.0108 6 7 4.2522 -0.0019 -0.0061 7 6 3.6200 -1.1569 -0.0015 8 6 2.2253 -1.2031 0.0046 9 6 1.5173 -2.4997 0.0104 10 8 0.3957 -2.5778 0.4729 11 7 2.1149 -3.5960 -0.4969 12 6 1.7661 -5.0286 -0.5596 13 6 2.6856 -5.0912 -1.7927 14 8 2.0084 -4.8520 -3.0280 15 6 3.5653 -6.3142 -1.8321 16 1 3.4882 -7.0600 -1.0548 17 6 4.4685 -6.4809 -2.8604 18 7 4.5620 -5.5727 -3.8071 19 14 5.5584 -7.9971 -2.9097 20 1 6.4342 -7.9385 -4.1075 21 1 6.3967 -8.0441 -1.6848 22 1 4.7104 -9.2144 -2.9761 23 6 3.3820 -3.8451 -1.2161 24 1 -0.3633 0.0698 1.0252 25 1 -0.3633 0.8531 -0.5731 26 1 -0.3633 -0.9228 -0.4523 27 1 1.6952 2.1329 0.0004 28 1 4.1859 -2.0767 -0.0015 29 1 0.7161 -5.2157 -0.7846 30 1 2.1291 -5.6085 0.2890 31 1 2.5877 -4.8614 -3.8023 32 1 5.1972 -5.6901 -4.5308 33 1 4.2216 -4.0751 -0.5603 34 1 3.6197 -3.0891 -1.9645 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119256000.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:52 Heat of formation + Delta-G solvation = -70.459281 kcal Electronic energy + Delta-G solvation = -21714.550619 eV Core-core repulsion = 18141.846145 eV Total energy + Delta-G solvation = -3572.704474 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.22755 -41.95299 -40.62027 -38.98106 -35.91839 -35.05711 -34.14038 -32.69358 -30.33622 -29.01468 -27.19966 -27.10252 -25.37712 -23.46856 -22.01710 -20.35265 -19.40952 -18.79586 -18.72062 -18.10114 -17.41223 -17.21448 -16.84704 -16.35779 -16.01727 -15.67664 -15.19024 -15.02178 -14.87918 -14.52403 -14.30435 -14.00012 -13.76412 -13.71239 -13.66409 -13.39391 -13.06786 -12.83709 -12.74401 -12.25690 -12.20720 -11.49423 -11.18414 -10.84416 -10.76336 -10.61377 -10.29031 -10.26235 -9.58438 -8.25497 -6.42394 -0.66331 -0.13815 1.49734 1.52001 1.58011 1.59956 1.80373 2.29635 2.41634 2.43689 2.97334 3.14115 3.32856 3.44472 3.64773 3.78923 4.08512 4.15671 4.33110 4.37028 4.48235 4.52514 4.60885 4.71299 4.73382 4.85888 4.90224 5.05780 5.20487 5.23612 5.40101 5.73830 5.93336 6.31574 6.63793 6.71740 7.00389 7.31256 7.43764 8.80208 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.022586 B = 0.004898 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.399619 B = 5715.589933 C = 6522.414938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.037 3.963 3 C -0.185 4.185 4 C 0.318 3.682 5 F -0.107 7.107 6 N -0.542 5.542 7 C 0.176 3.824 8 C -0.206 4.206 9 C 0.575 3.425 10 O -0.570 6.570 11 N -0.628 5.628 12 C 0.117 3.883 13 C 0.219 3.781 14 O -0.586 6.586 15 C -0.555 4.555 16 H 0.075 0.925 17 C 0.035 3.965 18 N -0.917 5.917 19 Si 0.965 3.035 20 H -0.286 1.286 21 H -0.267 1.267 22 H -0.275 1.275 23 C 0.086 3.914 24 H 0.097 0.903 25 H 0.104 0.896 26 H 0.065 0.935 27 H 0.194 0.806 28 H 0.175 0.825 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.387 0.613 32 H 0.275 0.725 33 H 0.101 0.899 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.161 10.574 5.913 12.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.029 3.971 3 C -0.206 4.206 4 C 0.165 3.835 5 F -0.086 7.086 6 N -0.257 5.257 7 C 0.018 3.982 8 C -0.212 4.212 9 C 0.366 3.634 10 O -0.452 6.452 11 N -0.360 5.360 12 C -0.005 4.005 13 C 0.178 3.822 14 O -0.398 6.398 15 C -0.593 4.593 16 H 0.094 0.906 17 C -0.166 4.166 18 N -0.557 5.557 19 Si 0.791 3.209 20 H -0.211 1.211 21 H -0.192 1.192 22 H -0.200 1.200 23 C -0.036 4.036 24 H 0.115 0.885 25 H 0.122 0.878 26 H 0.084 0.916 27 H 0.211 0.789 28 H 0.192 0.808 29 H 0.083 0.917 30 H 0.128 0.872 31 H 0.241 0.759 32 H 0.085 0.915 33 H 0.119 0.881 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.326 10.863 6.437 12.839 hybrid contribution 0.627 -0.675 -0.649 1.127 sum -1.699 10.188 5.789 11.840 Atomic orbital electron populations 1.21046 0.87201 1.04454 1.04624 1.20580 0.98700 0.89947 0.87852 1.21915 0.91439 1.01282 1.05953 1.18596 0.87693 0.81474 0.95713 1.91637 1.80299 1.43773 1.92892 1.67010 1.42578 0.98288 1.17818 1.22948 0.90568 0.94918 0.89768 1.20909 0.95384 0.94466 1.10395 1.17806 0.85168 0.83091 0.77343 1.90687 1.19456 1.85794 1.49305 1.50139 1.23458 1.07289 1.55149 1.23501 1.00296 0.78660 0.98015 1.20123 0.88439 0.91556 0.82111 1.86050 1.40872 1.94550 1.18319 1.21698 1.19871 1.07006 1.10717 0.90645 1.25715 0.97513 0.98930 0.94460 1.69461 1.37606 1.35600 1.13027 0.85484 0.78328 0.79350 0.77746 1.21130 1.19174 1.20002 1.24306 0.86799 0.98739 0.93777 0.88487 0.87770 0.91572 0.78859 0.80783 0.91711 0.87171 0.75872 0.91539 0.88104 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.06 71.24 0.65 -2.00 16 2 C 0.04 0.97 5.94 -19.42 -0.12 0.86 16 3 C -0.19 -3.95 9.79 22.37 0.22 -3.73 16 4 C 0.32 8.34 8.41 84.75 0.71 9.05 16 5 F -0.11 -2.64 17.29 44.97 0.78 -1.87 16 6 N -0.54 -16.74 10.36 -195.74 -2.03 -18.77 16 7 C 0.18 5.48 10.03 85.03 0.85 6.33 16 8 C -0.21 -6.62 5.82 -19.99 -0.12 -6.74 16 9 C 0.58 21.91 7.52 86.76 0.65 22.57 16 10 O -0.57 -23.64 14.88 -3.94 -0.06 -23.69 16 11 N -0.63 -24.75 3.58 -843.09 -3.02 -27.77 16 12 C 0.12 4.74 8.23 86.49 0.71 5.46 16 13 C 0.22 9.96 1.40 -10.88 -0.02 9.95 16 14 O -0.59 -29.46 13.48 -148.98 -2.01 -31.47 16 15 C -0.55 -26.35 8.61 25.60 0.22 -26.13 16 16 H 0.08 3.44 7.81 -2.91 -0.02 3.42 16 17 C 0.03 1.65 5.39 84.65 0.46 2.11 16 18 N -0.92 -45.08 11.20 21.45 0.24 -44.84 16 19 Si 0.97 38.25 29.54 68.60 2.03 40.28 16 20 H -0.29 -11.29 7.11 99.48 0.71 -10.59 16 21 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 22 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 23 C 0.09 3.45 5.74 86.44 0.50 3.94 16 24 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.10 1.61 8.12 -2.38 -0.02 1.59 16 26 H 0.07 1.95 5.91 -2.39 -0.01 1.94 16 27 H 0.19 2.46 8.06 -2.91 -0.02 2.44 16 28 H 0.18 5.30 5.67 -2.91 -0.02 5.28 16 29 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 30 H 0.11 3.96 8.09 -2.39 -0.02 3.94 16 31 H 0.39 19.83 6.60 -74.05 -0.49 19.35 16 32 H 0.27 12.95 8.31 -92.71 -0.77 12.18 16 33 H 0.10 3.72 7.71 -2.39 -0.02 3.70 16 34 H 0.06 2.66 7.93 -2.39 -0.02 2.64 16 Total: -1.00 -56.93 298.07 1.32 -55.61 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: 0.67 Total: 30.86 kcal Atomic # 6 Polarization: 16.94 SS G_CDS: 4.72 Total: 21.66 kcal Atomic # 7 Polarization: -86.57 SS G_CDS: -4.80 Total: -91.38 kcal Atomic # 8 Polarization: -53.09 SS G_CDS: -2.07 Total: -55.16 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.78 Total: -1.87 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -56.93 1.32 -55.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119256000.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.852 kcal (2) G-P(sol) polarization free energy of solvation -56.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds