Wall clock time and date at job start Tue Mar 31 2020 01:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38669 * 120.41810 * 2 1 4 4 C 1.38634 * 118.42354 * 180.02562 * 3 2 1 5 5 C 1.38228 * 119.15680 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.61625 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47466 * 124.99821 * 6 5 4 8 8 N 1.46505 * 109.47212 * 179.97438 * 7 6 5 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00597 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99622 * 179.97438 * 9 8 7 12 12 S 1.81002 * 109.47156 * 180.02562 * 11 9 8 13 13 C 1.76204 * 100.00151 * 180.02562 * 12 11 9 14 14 H 1.08000 * 119.99845 * 359.97438 * 13 12 11 15 15 C 1.38796 * 120.00054 * 180.02562 * 13 12 11 16 16 N 1.31631 * 120.00100 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99948 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47203 * 90.00024 * 17 15 13 19 19 H 1.48506 * 109.46989 * 210.00023 * 17 15 13 20 20 H 1.48506 * 109.47313 * 329.99924 * 17 15 13 21 21 N 1.31851 * 120.76373 * 0.25495 * 5 4 3 22 22 C 1.31881 * 121.72845 * 359.47643 * 21 5 4 23 23 H 1.08998 * 109.47362 * 90.00482 * 1 2 3 24 24 H 1.09008 * 109.46790 * 210.00402 * 1 2 3 25 25 H 1.08997 * 109.47632 * 330.00092 * 1 2 3 26 26 H 1.08002 * 120.78750 * 359.97438 * 3 2 1 27 27 H 1.07996 * 120.41875 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.47120 * 4.99574 * 6 5 4 29 29 H 1.08998 * 109.46862 * 245.00376 * 6 5 4 30 30 H 1.09002 * 109.47153 * 59.99773 * 7 6 5 31 31 H 1.09001 * 109.46832 * 299.99964 * 7 6 5 32 32 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 33 33 H 1.09001 * 109.47380 * 300.00190 * 11 9 8 34 34 H 1.09002 * 109.47060 * 60.00278 * 11 9 8 35 35 H 0.96999 * 120.00126 * 180.02562 * 16 15 13 36 36 H 1.07996 * 119.61936 * 180.26831 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1476 -0.0005 5 6 4.2256 -0.0823 -0.0005 6 6 5.7312 -0.1468 -0.0017 7 6 6.2063 -0.9947 1.1799 8 7 7.6700 -1.0579 1.1783 9 6 8.3153 -1.7548 2.1345 10 8 7.6845 -2.3300 2.9959 11 6 9.8209 -1.8203 2.1325 12 16 10.3830 -2.8233 3.5305 13 6 12.1263 -2.7322 3.2911 14 1 12.5288 -2.1699 2.4615 15 6 12.9822 -3.3841 4.1680 16 7 12.4916 -4.0708 5.1781 17 14 14.8303 -3.2881 3.9137 18 1 15.3710 -2.1165 4.6488 19 1 15.4654 -4.5294 4.4250 20 1 15.1239 -3.1423 2.4653 21 7 3.5255 -1.1995 -0.0050 22 6 2.2067 -1.1916 0.0005 23 1 -0.3634 -0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5138 26 1 1.6889 2.1423 -0.0004 27 1 4.1735 2.0593 -0.0001 28 1 6.1381 0.8605 0.0870 29 1 6.0748 -0.5966 -0.9332 30 1 5.7994 -2.0020 1.0911 31 1 5.8627 -0.5448 2.1113 32 1 8.1745 -0.5975 0.4896 33 1 10.1638 -2.2711 1.2012 34 1 10.2285 -0.8132 2.2203 35 1 13.0898 -4.5260 5.7912 36 1 1.6673 -2.1272 0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129516824.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:22 Heat of formation + Delta-G solvation = -18.345703 kcal Electronic energy + Delta-G solvation = -17867.876126 eV Core-core repulsion = 14863.644642 eV Total energy + Delta-G solvation = -3004.231484 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.64150 -39.04450 -35.63768 -33.87633 -32.55232 -32.39899 -30.86693 -28.95391 -26.55020 -25.44532 -24.23919 -22.96836 -21.45748 -20.31592 -17.82311 -17.07269 -16.59428 -16.02411 -15.81843 -15.41590 -15.31983 -14.77899 -14.64636 -14.05879 -13.93931 -13.49518 -13.27235 -13.11111 -12.97247 -12.86914 -12.49755 -12.09221 -11.92996 -11.85301 -11.35801 -11.04010 -10.99487 -10.73883 -10.09454 -9.79162 -9.69410 -9.34667 -9.05140 -9.04179 -8.80373 -8.19453 -6.46418 -6.18693 -3.88971 0.76142 0.97633 3.06857 3.17456 3.24372 3.29696 3.33682 3.45742 3.74143 4.03199 4.23256 4.39843 4.46236 4.57281 4.66058 4.86212 4.97491 5.08424 5.15251 5.16254 5.18867 5.25588 5.39720 5.44497 5.59366 5.67834 5.74200 5.88919 5.92563 5.97738 6.08102 6.18227 6.39530 6.68114 7.62345 7.71978 7.78023 8.38130 8.68760 9.26424 10.88737 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.061566 B = 0.002399 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.688365 B =11667.447877 C =11934.263107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.146 4.146 3 C -0.076 4.076 4 C -0.163 4.163 5 C 0.129 3.871 6 C -0.080 4.080 7 C 0.130 3.870 8 N -0.740 5.740 9 C 0.531 3.469 10 O -0.517 6.517 11 C -0.153 4.153 12 S -0.061 6.061 13 C -0.535 4.535 14 H 0.073 0.927 15 C 0.072 3.928 16 N -0.868 5.868 17 Si 0.919 3.081 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.272 1.272 21 N -0.474 5.474 22 C 0.105 3.895 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.133 0.867 27 H 0.136 0.864 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.397 0.603 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.268 0.732 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.733 12.365 -14.100 27.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.148 4.148 3 C -0.102 4.102 4 C -0.183 4.183 5 C -0.009 4.009 6 C -0.118 4.118 7 C 0.006 3.994 8 N -0.395 5.395 9 C 0.317 3.683 10 O -0.391 6.391 11 C -0.303 4.303 12 S 0.165 5.835 13 C -0.683 4.683 14 H 0.091 0.909 15 C -0.137 4.137 16 N -0.503 5.503 17 Si 0.745 3.255 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.197 1.197 21 N -0.182 5.182 22 C -0.053 4.053 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.151 0.849 27 H 0.153 0.847 28 H 0.104 0.896 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.231 0.769 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -21.308 10.477 -12.496 26.832 hybrid contribution 1.647 1.827 -1.497 2.880 sum -19.661 12.304 -13.993 27.088 Atomic orbital electron populations 1.20715 0.90190 1.03223 1.02545 1.20960 0.97662 0.94323 1.01823 1.21481 0.93986 0.98203 0.96506 1.21990 0.95201 0.98929 1.02206 1.21018 0.95997 0.88570 0.95311 1.20719 0.89274 1.01683 1.00146 1.21139 0.80261 1.00890 0.97115 1.45993 1.06749 1.55178 1.31589 1.20294 0.89732 0.77672 0.80611 1.90707 1.68439 1.43550 1.36397 1.23529 0.93531 1.06003 1.07277 1.85418 1.04545 1.63502 1.29992 1.22872 0.91192 1.37952 1.16287 0.90927 1.24999 0.99613 0.94537 0.94522 1.70022 1.35540 1.30598 1.14135 0.86164 0.83000 0.77760 0.78535 1.20297 1.20772 1.19704 1.67486 1.08230 1.30966 1.11500 1.22694 0.89642 0.97593 0.95386 0.90945 0.91056 0.91360 0.84868 0.84651 0.89625 0.89202 0.90433 0.91899 0.76907 0.89196 0.89239 0.92208 0.82715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 10.04 36.00 0.36 -0.16 16 2 C -0.15 -1.11 5.90 -104.48 -0.62 -1.73 16 3 C -0.08 -0.56 9.86 -39.28 -0.39 -0.94 16 4 C -0.16 -1.33 9.71 -39.44 -0.38 -1.72 16 5 C 0.13 1.32 6.17 -82.59 -0.51 0.81 16 6 C -0.08 -0.73 5.73 -27.89 -0.16 -0.89 16 7 C 0.13 1.70 5.53 -4.04 -0.02 1.67 16 8 N -0.74 -10.33 5.56 -60.29 -0.33 -10.66 16 9 C 0.53 10.33 7.85 -10.99 -0.09 10.25 16 10 O -0.52 -12.34 15.86 5.56 0.09 -12.25 16 11 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 12 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 13 C -0.53 -15.42 9.50 30.94 0.29 -15.13 16 14 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 15 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 16 N -0.87 -26.48 13.22 55.49 0.73 -25.75 16 17 Si 0.92 21.61 29.55 -169.99 -5.02 16.58 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 N -0.47 -5.52 9.89 -9.48 -0.09 -5.61 16 22 C 0.10 0.98 10.86 -17.55 -0.19 0.79 16 23 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 24 H 0.07 0.30 8.09 -51.92 -0.42 -0.12 16 25 H 0.07 0.27 8.10 -51.93 -0.42 -0.15 16 26 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 27 H 0.14 0.79 7.95 -52.49 -0.42 0.37 16 28 H 0.09 0.59 7.87 -51.93 -0.41 0.18 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.18 7.95 -51.93 -0.41 0.77 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.40 4.13 8.47 -40.82 -0.35 3.78 16 33 H 0.09 1.71 8.14 -51.91 -0.42 1.28 16 34 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 35 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 330.15 15.07 4.98 4.98 Total: -1.00 -36.37 330.15 -8.37 -44.74 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -4.93 Total: -0.12 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -1.57 Total: -7.99 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.31 Total: -42.02 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.09 Total: -12.25 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -36.37 -8.37 -44.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129516824.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.391 kcal (2) G-P(sol) polarization free energy of solvation -36.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds