Wall clock time and date at job start Tue Mar 31 2020 01:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38669 * 120.41810 * 2 1 4 4 C 1.38634 * 118.42354 * 180.02562 * 3 2 1 5 5 C 1.38228 * 119.15680 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.61625 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47466 * 124.99821 * 6 5 4 8 8 N 1.46505 * 109.47212 * 179.97438 * 7 6 5 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00597 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99622 * 179.97438 * 9 8 7 12 12 S 1.81002 * 109.47156 * 180.02562 * 11 9 8 13 13 C 1.76204 * 100.00151 * 180.02562 * 12 11 9 14 14 H 1.08000 * 119.99845 * 359.97438 * 13 12 11 15 15 C 1.38796 * 120.00054 * 180.02562 * 13 12 11 16 16 N 1.31631 * 120.00100 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99948 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47203 * 90.00024 * 17 15 13 19 19 H 1.48506 * 109.46989 * 210.00023 * 17 15 13 20 20 H 1.48506 * 109.47313 * 329.99924 * 17 15 13 21 21 N 1.31851 * 120.76373 * 0.25495 * 5 4 3 22 22 C 1.31881 * 121.72845 * 359.47643 * 21 5 4 23 23 H 1.08998 * 109.47362 * 90.00482 * 1 2 3 24 24 H 1.09008 * 109.46790 * 210.00402 * 1 2 3 25 25 H 1.08997 * 109.47632 * 330.00092 * 1 2 3 26 26 H 1.08002 * 120.78750 * 359.97438 * 3 2 1 27 27 H 1.07996 * 120.41875 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.47120 * 4.99574 * 6 5 4 29 29 H 1.08998 * 109.46862 * 245.00376 * 6 5 4 30 30 H 1.09002 * 109.47153 * 59.99773 * 7 6 5 31 31 H 1.09001 * 109.46832 * 299.99964 * 7 6 5 32 32 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 33 33 H 1.09001 * 109.47380 * 300.00190 * 11 9 8 34 34 H 1.09002 * 109.47060 * 60.00278 * 11 9 8 35 35 H 0.96999 * 120.00126 * 180.02562 * 16 15 13 36 36 H 1.07996 * 119.61936 * 180.26831 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1476 -0.0005 5 6 4.2256 -0.0823 -0.0005 6 6 5.7312 -0.1468 -0.0017 7 6 6.2063 -0.9947 1.1799 8 7 7.6700 -1.0579 1.1783 9 6 8.3153 -1.7548 2.1345 10 8 7.6845 -2.3300 2.9959 11 6 9.8209 -1.8203 2.1325 12 16 10.3830 -2.8233 3.5305 13 6 12.1263 -2.7322 3.2911 14 1 12.5288 -2.1699 2.4615 15 6 12.9822 -3.3841 4.1680 16 7 12.4916 -4.0708 5.1781 17 14 14.8303 -3.2881 3.9137 18 1 15.3710 -2.1165 4.6488 19 1 15.4654 -4.5294 4.4250 20 1 15.1239 -3.1423 2.4653 21 7 3.5255 -1.1995 -0.0050 22 6 2.2067 -1.1916 0.0005 23 1 -0.3634 -0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5138 26 1 1.6889 2.1423 -0.0004 27 1 4.1735 2.0593 -0.0001 28 1 6.1381 0.8605 0.0870 29 1 6.0748 -0.5966 -0.9332 30 1 5.7994 -2.0020 1.0911 31 1 5.8627 -0.5448 2.1113 32 1 8.1745 -0.5975 0.4896 33 1 10.1638 -2.2711 1.2012 34 1 10.2285 -0.8132 2.2203 35 1 13.0898 -4.5260 5.7912 36 1 1.6673 -2.1272 0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129516824.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:21 Heat of formation + Delta-G solvation = -43.991647 kcal Electronic energy + Delta-G solvation = -17868.988218 eV Core-core repulsion = 14863.644642 eV Total energy + Delta-G solvation = -3005.343576 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.30279 -40.53802 -36.70799 -34.75797 -34.57561 -33.28554 -31.92121 -30.21730 -27.73101 -27.21248 -24.98496 -23.73476 -22.20781 -21.75176 -19.84213 -17.94551 -17.73090 -17.22590 -16.87865 -16.87040 -16.65300 -15.99143 -15.80304 -15.45749 -15.03324 -14.71092 -14.46976 -14.07612 -13.80693 -13.70126 -13.50015 -13.25995 -13.16040 -12.88377 -12.81074 -12.59680 -12.47025 -12.32510 -11.72624 -11.13623 -11.00751 -10.70576 -10.35748 -10.26752 -10.12474 -9.67785 -8.66843 -8.33882 -6.12457 0.13294 0.37135 1.27406 1.43455 1.47711 1.58299 1.61011 2.25156 2.29212 2.81128 3.00104 3.30591 3.39129 3.77166 3.91929 3.96823 4.03157 4.10917 4.14128 4.22305 4.32609 4.44792 4.51783 4.62684 4.76734 4.83123 4.86596 4.96809 5.02654 5.21422 5.22892 5.37859 5.40810 5.42646 5.82435 6.20675 6.51888 7.06820 7.07083 7.25323 8.75452 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.061566 B = 0.002399 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.688365 B =11667.447877 C =11934.263107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.144 4.144 3 C -0.081 4.081 4 C -0.162 4.162 5 C 0.102 3.898 6 C -0.067 4.067 7 C 0.135 3.865 8 N -0.711 5.711 9 C 0.531 3.469 10 O -0.570 6.570 11 C -0.127 4.127 12 S -0.157 6.157 13 C -0.545 4.545 14 H 0.085 0.915 15 C 0.011 3.989 16 N -0.912 5.912 17 Si 1.001 2.999 18 H -0.267 1.267 19 H -0.279 1.279 20 H -0.257 1.257 21 N -0.512 5.512 22 C 0.080 3.920 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.162 0.838 27 H 0.162 0.838 28 H 0.116 0.884 29 H 0.098 0.902 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.419 0.581 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.271 0.729 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.490 14.835 -16.180 30.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.146 4.146 3 C -0.107 4.107 4 C -0.182 4.182 5 C -0.036 4.036 6 C -0.105 4.105 7 C 0.011 3.989 8 N -0.365 5.365 9 C 0.317 3.683 10 O -0.448 6.448 11 C -0.278 4.278 12 S 0.070 5.930 13 C -0.692 4.692 14 H 0.103 0.897 15 C -0.194 4.194 16 N -0.549 5.549 17 Si 0.823 3.177 18 H -0.192 1.192 19 H -0.204 1.204 20 H -0.181 1.181 21 N -0.221 5.221 22 C -0.077 4.077 23 H 0.102 0.898 24 H 0.093 0.907 25 H 0.099 0.901 26 H 0.180 0.820 27 H 0.179 0.821 28 H 0.135 0.865 29 H 0.116 0.884 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.257 0.743 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.080 0.920 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -21.081 12.988 -14.638 28.764 hybrid contribution 1.405 1.114 -0.919 2.014 sum -19.676 14.101 -15.556 28.775 Atomic orbital electron populations 1.20773 0.88168 1.04058 1.03468 1.21289 0.99165 0.93887 1.00269 1.21901 0.93975 0.99249 0.95588 1.22295 0.95914 0.99014 1.00935 1.21231 0.96320 0.89184 0.96857 1.20669 0.89105 1.02419 0.98297 1.21119 0.78964 1.00265 0.98560 1.45697 1.07400 1.53155 1.30263 1.20155 0.89275 0.77852 0.81025 1.90696 1.69145 1.46149 1.38835 1.23363 0.94362 1.05694 1.04409 1.85644 1.06034 1.66269 1.35063 1.23207 0.91089 1.38169 1.16769 0.89720 1.26174 1.05489 0.93793 0.93945 1.70195 1.37654 1.31707 1.15326 0.84918 0.75593 0.77999 0.79231 1.19236 1.20387 1.18094 1.67419 1.09509 1.32392 1.12774 1.22985 0.89380 0.98989 0.96380 0.89839 0.90685 0.90092 0.82009 0.82067 0.86547 0.88358 0.93118 0.93304 0.74286 0.87019 0.86784 0.92020 0.81922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.04 71.24 0.72 -0.10 16 2 C -0.14 -2.01 5.90 -19.77 -0.12 -2.12 16 3 C -0.08 -1.00 9.86 22.47 0.22 -0.78 16 4 C -0.16 -2.27 9.71 22.36 0.22 -2.05 16 5 C 0.10 1.97 6.17 42.55 0.26 2.23 16 6 C -0.07 -1.10 5.73 29.85 0.17 -0.93 16 7 C 0.14 3.47 5.53 86.38 0.48 3.94 16 8 N -0.71 -18.77 5.56 -463.06 -2.57 -21.34 16 9 C 0.53 20.54 7.85 87.66 0.69 21.23 16 10 O -0.57 -28.12 15.86 -3.03 -0.05 -28.16 16 11 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 12 S -0.16 -8.93 20.57 -56.49 -1.16 -10.09 16 13 C -0.54 -31.42 9.50 67.95 0.65 -30.77 16 14 H 0.08 4.50 7.80 -2.91 -0.02 4.48 16 15 C 0.01 0.61 5.49 84.86 0.47 1.07 16 16 N -0.91 -56.83 13.22 21.65 0.29 -56.55 16 17 Si 1.00 43.93 29.55 68.60 2.03 45.96 16 18 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 19 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 20 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 21 N -0.51 -12.07 9.89 -183.89 -1.82 -13.89 16 22 C 0.08 1.50 10.86 84.67 0.92 2.42 16 23 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 24 H 0.07 0.52 8.09 -2.38 -0.02 0.50 16 25 H 0.08 0.43 8.10 -2.39 -0.02 0.41 16 26 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 27 H 0.16 1.30 7.95 -2.91 -0.02 1.27 16 28 H 0.12 1.18 7.87 -2.39 -0.02 1.17 16 29 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.05 1.60 7.95 -2.39 -0.02 1.58 16 31 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.42 7.43 8.47 -92.71 -0.79 6.64 16 33 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16 34 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 35 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 36 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -82.71 330.15 2.12 -80.59 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.30 Total: 14.04 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: 5.11 Total: -10.55 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -4.10 Total: -91.78 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.05 Total: -28.16 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: -8.93 SS G_CDS: -1.16 Total: -10.09 kcal Total: -82.71 2.12 -80.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129516824.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.597 kcal (2) G-P(sol) polarization free energy of solvation -82.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds