Wall clock time and date at job start Tue Mar 31 2020 01:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30944 * 122.90234 * 2 1 4 4 C 1.29420 * 117.36333 * 180.27000 * 3 2 1 5 5 S 1.70950 * 110.39381 * 0.02562 * 4 3 2 6 6 C 1.35665 * 122.90539 * 180.29846 * 2 1 3 7 7 C 1.46687 * 126.12841 * 359.74431 * 6 2 1 8 8 O 1.21685 * 120.00221 * 0.02562 * 7 6 2 9 9 N 1.34771 * 119.99714 * 180.02562 * 7 6 2 10 10 C 1.46499 * 120.00348 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.41067 * 324.86200 * 10 9 7 12 12 C 1.52958 * 109.41687 * 84.64371 * 10 9 7 13 13 C 1.53225 * 109.40965 * 183.71130 * 12 10 9 14 14 C 1.51270 * 108.53330 * 305.37219 * 13 12 10 15 15 C 1.37870 * 120.85256 * 231.32644 * 14 13 12 16 16 N 1.31511 * 120.00328 * 180.02562 * 15 14 13 17 17 Si 1.86800 * 119.99842 * 0.02562 * 15 14 13 18 18 H 1.48499 * 109.46939 * 60.00555 * 17 15 14 19 19 H 1.48504 * 109.47220 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47548 * 300.00351 * 17 15 14 21 21 C 1.51273 * 118.29771 * 51.34691 * 14 13 12 22 22 C 1.52958 * 109.41766 * 205.00135 * 10 9 7 23 23 H 1.09001 * 109.46810 * 269.70328 * 1 2 3 24 24 H 1.08995 * 109.47877 * 29.70225 * 1 2 3 25 25 H 1.08999 * 109.47270 * 149.70943 * 1 2 3 26 26 H 1.08008 * 124.80620 * 180.02562 * 4 3 2 27 27 H 0.97006 * 119.99950 * 359.97438 * 9 7 6 28 28 H 1.09005 * 109.48360 * 303.69260 * 12 10 9 29 29 H 1.09003 * 109.47961 * 63.72441 * 12 10 9 30 30 H 1.08994 * 109.62699 * 185.66007 * 13 12 10 31 31 H 1.08991 * 109.62591 * 65.08378 * 13 12 10 32 32 H 0.97006 * 120.00604 * 180.02562 * 16 15 14 33 33 H 1.09007 * 109.62511 * 188.93542 * 21 14 13 34 34 H 1.09001 * 109.62813 * 68.36928 * 21 14 13 35 35 H 1.08997 * 109.48229 * 296.27377 * 22 10 9 36 36 H 1.09003 * 109.48058 * 56.31583 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2183 1.0994 0.0000 4 6 3.5064 0.9745 -0.0054 5 16 3.9447 -0.6779 -0.0121 6 6 2.2440 -1.1390 -0.0059 7 6 1.7191 -2.5087 -0.0078 8 8 0.5174 -2.6999 -0.0043 9 7 2.5680 -3.5555 -0.0134 10 6 2.0439 -4.9236 -0.0158 11 1 1.1310 -4.9629 0.5785 12 6 1.7320 -5.3461 -1.4524 13 6 1.0979 -6.7410 -1.4466 14 6 2.0188 -7.6848 -0.7054 15 6 2.4080 -8.8812 -1.2693 16 7 3.2088 -9.6894 -0.6097 17 14 1.7977 -9.3543 -2.9702 18 1 2.2371 -8.3337 -3.9553 19 1 2.3568 -10.6776 -3.3464 20 1 0.3146 -9.4274 -2.9614 21 6 2.5015 -7.2824 0.6707 22 6 3.0847 -5.8679 0.5881 23 1 -0.3633 -0.0053 1.0277 24 1 -0.3635 0.8926 -0.5092 25 1 -0.3634 -0.8873 -0.5183 26 1 4.2057 1.7977 -0.0057 27 1 3.5260 -3.4032 -0.0165 28 1 1.0384 -4.6333 -1.8985 29 1 2.6542 -5.3683 -2.0331 30 1 0.9663 -7.0876 -2.4716 31 1 0.1318 -6.7019 -0.9436 32 1 3.4829 -10.5310 -1.0066 33 1 3.2718 -7.9770 1.0060 34 1 1.6653 -7.2935 1.3698 35 1 3.9749 -5.8778 -0.0409 36 1 3.3498 -5.5250 1.5882 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147392032.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:45 Heat of formation + Delta-G solvation = -10.667098 kcal Electronic energy + Delta-G solvation = -19522.426383 eV Core-core repulsion = 16518.527869 eV Total energy + Delta-G solvation = -3003.898515 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.41282 -39.14792 -36.77476 -33.82864 -32.07043 -31.59824 -29.73815 -28.72479 -26.89668 -25.18281 -22.82834 -21.61361 -21.04631 -19.84779 -19.06634 -18.48881 -16.87562 -16.00261 -15.79104 -15.45017 -14.83416 -14.48925 -14.13686 -13.80371 -13.73306 -13.20155 -12.80156 -12.61557 -12.52032 -12.29044 -12.11229 -11.65227 -11.48483 -11.07267 -10.84029 -10.72576 -10.26678 -10.15158 -10.06637 -9.81208 -9.72876 -9.66102 -9.09114 -9.02907 -8.89727 -8.51084 -8.41155 -6.13671 -4.04705 0.09793 1.01040 1.38513 2.33544 3.24446 3.27399 3.34329 3.35689 3.36870 3.96192 4.36606 4.82601 4.83112 5.03273 5.14685 5.60413 5.65014 5.67434 5.76943 5.81725 6.13008 6.22835 6.39982 6.42613 6.64959 6.68369 6.83464 6.90154 7.01995 7.15709 7.37299 7.39493 7.60302 7.65194 7.68746 7.82294 8.33556 8.34675 8.92156 9.51345 10.95935 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.032477 B = 0.004109 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.943495 B = 6813.374467 C = 7099.849950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.137 3.863 3 N -0.475 5.475 4 C 0.030 3.970 5 S 0.159 5.841 6 C -0.286 4.286 7 C 0.590 3.410 8 O -0.523 6.523 9 N -0.716 5.716 10 C 0.155 3.845 11 H 0.082 0.918 12 C -0.114 4.114 13 C -0.008 4.008 14 C -0.491 4.491 15 C 0.077 3.923 16 N -0.890 5.890 17 Si 0.891 3.109 18 H -0.275 1.275 19 H -0.292 1.292 20 H -0.274 1.274 21 C 0.014 3.986 22 C -0.115 4.115 23 H 0.080 0.920 24 H 0.072 0.928 25 H 0.102 0.898 26 H 0.205 0.795 27 H 0.392 0.608 28 H 0.038 0.962 29 H 0.052 0.948 30 H 0.026 0.974 31 H 0.021 0.979 32 H 0.265 0.735 33 H 0.062 0.938 34 H 0.007 0.993 35 H 0.055 0.945 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.959 18.094 1.139 18.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.000 4.000 3 N -0.189 5.189 4 C -0.266 4.266 5 S 0.414 5.586 6 C -0.410 4.410 7 C 0.374 3.626 8 O -0.402 6.402 9 N -0.365 5.365 10 C 0.052 3.948 11 H 0.100 0.900 12 C -0.153 4.153 13 C -0.046 4.046 14 C -0.510 4.510 15 C -0.125 4.125 16 N -0.527 5.527 17 Si 0.719 3.281 18 H -0.200 1.200 19 H -0.218 1.218 20 H -0.199 1.199 21 C -0.024 4.024 22 C -0.153 4.153 23 H 0.099 0.901 24 H 0.091 0.909 25 H 0.120 0.880 26 H 0.221 0.779 27 H 0.225 0.775 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.026 0.974 35 H 0.074 0.926 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.998 17.770 1.139 18.057 hybrid contribution -0.363 -0.016 -0.982 1.047 sum 2.635 17.755 0.157 17.950 Atomic orbital electron populations 1.20663 0.85876 1.04504 1.03750 1.20751 0.98828 0.84930 0.95512 1.66119 1.04918 1.31406 1.16486 1.28671 0.95322 1.00424 1.02157 1.83979 1.05863 1.03268 1.65517 1.25732 0.95954 0.99684 1.19599 1.16690 0.86472 0.82261 0.77149 1.90782 1.14179 1.84780 1.50439 1.46372 1.09064 1.07150 1.73899 1.21143 0.98155 0.77268 0.98185 0.89961 1.21919 0.99974 0.98683 0.94740 1.19589 0.96416 0.92173 0.96447 1.20027 1.27617 1.02007 1.01350 1.24823 0.94447 0.95761 0.97499 1.69814 1.33902 1.10950 1.38083 0.86653 0.79444 0.77277 0.84693 1.20022 1.21846 1.19934 1.19337 0.96819 0.90486 0.95780 1.21951 0.97498 0.98397 0.97490 0.90140 0.90919 0.87955 0.77884 0.77504 0.94326 0.92958 0.95557 0.96021 0.92481 0.91982 0.97446 0.92631 0.94489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.11 9.69 36.01 0.35 -0.76 16 2 C 0.14 1.84 6.79 -83.89 -0.57 1.27 16 3 N -0.48 -5.80 10.50 -11.53 -0.12 -5.92 16 4 C 0.03 0.27 12.22 51.75 0.63 0.90 16 5 S 0.16 1.53 22.35 -107.50 -2.40 -0.87 16 6 C -0.29 -3.90 6.48 -37.09 -0.24 -4.14 16 7 C 0.59 9.72 7.74 -12.85 -0.10 9.62 16 8 O -0.52 -10.05 13.94 5.20 0.07 -9.98 16 9 N -0.72 -11.48 5.07 -55.16 -0.28 -11.76 16 10 C 0.15 2.98 2.35 -67.97 -0.16 2.82 16 11 H 0.08 1.73 7.58 -51.93 -0.39 1.33 16 12 C -0.11 -2.37 5.50 -26.64 -0.15 -2.51 16 13 C -0.01 -0.19 5.59 -27.49 -0.15 -0.34 16 14 C -0.49 -12.69 5.51 -98.92 -0.55 -13.24 16 15 C 0.08 2.09 5.46 -17.82 -0.10 1.99 16 16 N -0.89 -25.11 12.73 55.43 0.71 -24.40 16 17 Si 0.89 21.13 26.80 -169.99 -4.56 16.57 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 C 0.01 0.33 5.97 -27.49 -0.16 0.16 16 22 C -0.11 -2.29 5.40 -26.64 -0.14 -2.43 16 23 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.10 1.44 6.02 -51.93 -0.31 1.13 16 26 H 0.20 0.99 8.06 -52.48 -0.42 0.57 16 27 H 0.39 5.31 7.78 -40.82 -0.32 4.99 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.03 0.61 5.17 -51.93 -0.27 0.34 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.06 1.63 7.07 -51.93 -0.37 1.26 16 34 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 306.54 15.07 4.62 4.62 Total: -1.00 -29.97 306.54 -7.90 -37.87 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -4.60 Total: 0.53 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -1.34 Total: -6.67 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.30 Total: -42.08 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.07 Total: -9.98 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.56 Total: 16.57 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.40 Total: -0.87 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.97 -7.90 -37.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147392032.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.206 kcal (2) G-P(sol) polarization free energy of solvation -29.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds