Wall clock time and date at job start Tue Mar 31 2020 01:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30944 * 122.90234 * 2 1 4 4 C 1.29420 * 117.36333 * 180.27000 * 3 2 1 5 5 S 1.70950 * 110.39381 * 0.02562 * 4 3 2 6 6 C 1.35665 * 122.90539 * 180.29846 * 2 1 3 7 7 C 1.46687 * 126.12841 * 359.74431 * 6 2 1 8 8 O 1.21685 * 120.00221 * 0.02562 * 7 6 2 9 9 N 1.34771 * 119.99714 * 180.02562 * 7 6 2 10 10 C 1.46499 * 120.00348 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.41067 * 324.86200 * 10 9 7 12 12 C 1.52958 * 109.41687 * 84.64371 * 10 9 7 13 13 C 1.53225 * 109.40965 * 183.71130 * 12 10 9 14 14 C 1.51270 * 108.53330 * 305.37219 * 13 12 10 15 15 C 1.37870 * 120.85256 * 231.32644 * 14 13 12 16 16 N 1.31511 * 120.00328 * 180.02562 * 15 14 13 17 17 Si 1.86800 * 119.99842 * 0.02562 * 15 14 13 18 18 H 1.48499 * 109.46939 * 60.00555 * 17 15 14 19 19 H 1.48504 * 109.47220 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47548 * 300.00351 * 17 15 14 21 21 C 1.51273 * 118.29771 * 51.34691 * 14 13 12 22 22 C 1.52958 * 109.41766 * 205.00135 * 10 9 7 23 23 H 1.09001 * 109.46810 * 269.70328 * 1 2 3 24 24 H 1.08995 * 109.47877 * 29.70225 * 1 2 3 25 25 H 1.08999 * 109.47270 * 149.70943 * 1 2 3 26 26 H 1.08008 * 124.80620 * 180.02562 * 4 3 2 27 27 H 0.97006 * 119.99950 * 359.97438 * 9 7 6 28 28 H 1.09005 * 109.48360 * 303.69260 * 12 10 9 29 29 H 1.09003 * 109.47961 * 63.72441 * 12 10 9 30 30 H 1.08994 * 109.62699 * 185.66007 * 13 12 10 31 31 H 1.08991 * 109.62591 * 65.08378 * 13 12 10 32 32 H 0.97006 * 120.00604 * 180.02562 * 16 15 14 33 33 H 1.09007 * 109.62511 * 188.93542 * 21 14 13 34 34 H 1.09001 * 109.62813 * 68.36928 * 21 14 13 35 35 H 1.08997 * 109.48229 * 296.27377 * 22 10 9 36 36 H 1.09003 * 109.48058 * 56.31583 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2183 1.0994 0.0000 4 6 3.5064 0.9745 -0.0054 5 16 3.9447 -0.6779 -0.0121 6 6 2.2440 -1.1390 -0.0059 7 6 1.7191 -2.5087 -0.0078 8 8 0.5174 -2.6999 -0.0043 9 7 2.5680 -3.5555 -0.0134 10 6 2.0439 -4.9236 -0.0158 11 1 1.1310 -4.9629 0.5785 12 6 1.7320 -5.3461 -1.4524 13 6 1.0979 -6.7410 -1.4466 14 6 2.0188 -7.6848 -0.7054 15 6 2.4080 -8.8812 -1.2693 16 7 3.2088 -9.6894 -0.6097 17 14 1.7977 -9.3543 -2.9702 18 1 2.2371 -8.3337 -3.9553 19 1 2.3568 -10.6776 -3.3464 20 1 0.3146 -9.4274 -2.9614 21 6 2.5015 -7.2824 0.6707 22 6 3.0847 -5.8679 0.5881 23 1 -0.3633 -0.0053 1.0277 24 1 -0.3635 0.8926 -0.5092 25 1 -0.3634 -0.8873 -0.5183 26 1 4.2057 1.7977 -0.0057 27 1 3.5260 -3.4032 -0.0165 28 1 1.0384 -4.6333 -1.8985 29 1 2.6542 -5.3683 -2.0331 30 1 0.9663 -7.0876 -2.4716 31 1 0.1318 -6.7019 -0.9436 32 1 3.4829 -10.5310 -1.0066 33 1 3.2718 -7.9770 1.0060 34 1 1.6653 -7.2935 1.3698 35 1 3.9749 -5.8778 -0.0409 36 1 3.3498 -5.5250 1.5882 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147392032.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:44 Heat of formation + Delta-G solvation = -30.583666 kcal Electronic energy + Delta-G solvation = -19523.290031 eV Core-core repulsion = 16518.527869 eV Total energy + Delta-G solvation = -3004.762162 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.46691 -40.35626 -38.40193 -35.46541 -33.57080 -32.84549 -31.52271 -30.04429 -28.41037 -26.02082 -24.42114 -23.37476 -22.48020 -21.40617 -20.34387 -19.39689 -18.23814 -17.57497 -17.09906 -16.54884 -16.39594 -15.98733 -15.40026 -15.06530 -14.86771 -14.58905 -14.54514 -14.13482 -13.96672 -13.62485 -13.50239 -13.29968 -12.80200 -12.67477 -12.56703 -12.36220 -12.02132 -11.86005 -11.61497 -11.24051 -10.95054 -10.78897 -10.67684 -10.59651 -10.54335 -10.02515 -9.82603 -8.18177 -6.12118 -0.78314 0.18678 0.56158 1.39188 1.39321 1.41367 1.48577 2.05390 2.09347 2.40322 3.10095 3.19059 3.71815 3.97337 4.06500 4.15637 4.21566 4.46106 4.68260 4.68580 4.72218 4.80384 4.85748 4.93640 5.04891 5.06228 5.18528 5.20140 5.31374 5.53179 5.53852 5.64419 5.74804 5.80684 6.33348 6.42217 6.57723 6.93055 7.09764 7.46187 8.92444 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.032477 B = 0.004109 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.943495 B = 6813.374467 C = 7099.849950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.136 3.864 3 N -0.502 5.502 4 C 0.050 3.950 5 S 0.214 5.786 6 C -0.328 4.328 7 C 0.590 3.410 8 O -0.559 6.559 9 N -0.709 5.709 10 C 0.167 3.833 11 H 0.063 0.937 12 C -0.107 4.107 13 C -0.011 4.011 14 C -0.501 4.501 15 C 0.029 3.971 16 N -0.927 5.927 17 Si 0.939 3.061 18 H -0.265 1.265 19 H -0.292 1.292 20 H -0.271 1.271 21 C 0.009 3.991 22 C -0.102 4.102 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.249 0.751 27 H 0.406 0.594 28 H 0.042 0.958 29 H 0.055 0.945 30 H 0.027 0.973 31 H 0.017 0.983 32 H 0.264 0.736 33 H 0.035 0.965 34 H -0.001 1.001 35 H 0.058 0.942 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.270 20.622 0.582 21.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.002 4.002 3 N -0.217 5.217 4 C -0.245 4.245 5 S 0.470 5.530 6 C -0.452 4.452 7 C 0.377 3.623 8 O -0.440 6.440 9 N -0.359 5.359 10 C 0.064 3.936 11 H 0.081 0.919 12 C -0.146 4.146 13 C -0.049 4.049 14 C -0.520 4.520 15 C -0.170 4.170 16 N -0.566 5.566 17 Si 0.766 3.234 18 H -0.190 1.190 19 H -0.218 1.218 20 H -0.197 1.197 21 C -0.029 4.029 22 C -0.140 4.140 23 H 0.101 0.899 24 H 0.105 0.895 25 H 0.100 0.900 26 H 0.265 0.735 27 H 0.242 0.758 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.035 0.965 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.018 0.982 35 H 0.077 0.923 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.342 20.323 0.579 20.789 hybrid contribution -0.725 -0.698 -0.744 1.252 sum 3.616 19.625 -0.165 19.956 Atomic orbital electron populations 1.20609 0.86197 1.04123 1.03801 1.20893 0.99212 0.85415 0.94721 1.66193 1.06197 1.30809 1.18473 1.29510 0.94983 1.01615 0.98354 1.83771 1.02050 1.02886 1.64303 1.25451 0.98997 0.98009 1.22715 1.17013 0.85973 0.83297 0.76013 1.90763 1.15744 1.85608 1.51869 1.46058 1.09849 1.05797 1.74154 1.20720 0.97246 0.78892 0.96781 0.91867 1.21794 0.99901 0.97010 0.95872 1.19600 0.95887 0.93351 0.96066 1.20570 1.27208 1.02208 1.02027 1.25505 0.94966 0.95997 1.00550 1.69931 1.35676 1.11462 1.39557 0.85868 0.78997 0.77130 0.81442 1.19034 1.21819 1.19667 1.19295 0.95913 0.92679 0.94985 1.21719 0.97298 0.95890 0.99092 0.89858 0.89517 0.90007 0.73479 0.75834 0.93948 0.92582 0.95433 0.96506 0.92664 0.94586 0.98246 0.92305 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.17 9.69 71.24 0.69 -1.48 16 2 C 0.14 3.45 6.79 42.09 0.29 3.73 16 3 N -0.50 -10.84 10.50 -190.40 -2.00 -12.84 16 4 C 0.05 0.69 12.22 130.60 1.60 2.29 16 5 S 0.21 3.37 22.35 -56.49 -1.26 2.11 16 6 C -0.33 -8.40 6.48 23.88 0.15 -8.25 16 7 C 0.59 18.96 7.74 86.45 0.67 19.63 16 8 O -0.56 -21.64 13.94 -4.30 -0.06 -21.70 16 9 N -0.71 -21.69 5.07 -446.64 -2.26 -23.95 16 10 C 0.17 6.30 2.35 44.96 0.11 6.41 16 11 H 0.06 2.66 7.58 -2.39 -0.02 2.64 16 12 C -0.11 -4.33 5.50 30.66 0.17 -4.16 16 13 C -0.01 -0.51 5.59 30.10 0.17 -0.34 16 14 C -0.50 -26.04 5.51 -16.17 -0.09 -26.13 16 15 C 0.03 1.55 5.46 84.65 0.46 2.02 16 16 N -0.93 -53.28 12.73 21.44 0.27 -53.01 16 17 Si 0.94 43.31 26.80 68.60 1.84 45.14 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 19 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 21 C 0.01 0.45 5.97 30.11 0.18 0.63 16 22 C -0.10 -3.95 5.40 30.66 0.17 -3.79 16 23 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.08 2.36 6.02 -2.39 -0.01 2.34 16 26 H 0.25 0.99 8.06 -2.91 -0.02 0.96 16 27 H 0.41 10.04 7.78 -92.70 -0.72 9.32 16 28 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.03 1.25 5.17 -2.39 -0.01 1.24 16 31 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.26 14.51 8.31 -92.70 -0.77 13.74 16 33 H 0.04 1.92 7.07 -2.38 -0.02 1.91 16 34 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 35 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.06 2.06 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -65.73 306.54 1.47 -64.26 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 0.39 Total: 9.42 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: 4.56 Total: -9.43 kcal Atomic # 7 Polarization: -85.81 SS G_CDS: -3.99 Total: -89.80 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.06 Total: -21.70 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.84 Total: 45.14 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -1.26 Total: 2.11 kcal Total: -65.73 1.47 -64.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147392032.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.675 kcal (2) G-P(sol) polarization free energy of solvation -65.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds