Wall clock time and date at job start Tue Mar 31 2020 01:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32292 * 120.40323 * 2 1 4 4 C 1.32480 * 120.74144 * 180.25499 * 3 2 1 5 5 N 1.38405 * 119.22100 * 179.71552 * 4 3 2 6 6 C 1.47952 * 111.00276 * 179.72994 * 5 4 3 7 7 C 1.53933 * 86.18298 * 222.41953 * 6 5 4 8 8 O 1.42903 * 113.73060 * 269.26029 * 7 6 5 9 9 C 1.50693 * 113.73787 * 138.08155 * 7 6 5 10 10 H 1.08001 * 119.99966 * 359.97438 * 9 7 6 11 11 C 1.37876 * 120.00011 * 179.72766 * 9 7 6 12 12 N 1.31512 * 120.00345 * 0.26947 * 11 9 7 13 13 Si 1.86806 * 119.99850 * 180.27520 * 11 9 7 14 14 H 1.48498 * 109.47331 * 59.99508 * 13 11 9 15 15 H 1.48499 * 109.46837 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47052 * 299.99520 * 13 11 9 17 17 C 1.47958 * 110.99721 * 80.36885 * 5 4 3 18 18 N 1.32514 * 121.56084 * 359.44097 * 4 3 2 19 19 C 1.32264 * 120.74306 * 0.27490 * 18 4 3 20 20 C 1.38586 * 120.39845 * 179.70362 * 2 1 3 21 21 N 1.48002 * 120.71894 * 0.02562 * 20 2 1 22 22 O 1.21806 * 120.00263 * 323.34309 * 21 20 2 23 23 O 1.21803 * 120.00102 * 143.35167 * 21 20 2 24 24 H 1.08996 * 109.47430 * 264.65564 * 1 2 3 25 25 H 1.09004 * 109.46826 * 24.65026 * 1 2 3 26 26 H 1.08998 * 109.47494 * 144.64947 * 1 2 3 27 27 H 1.09005 * 113.75946 * 108.09608 * 6 5 4 28 28 H 1.09007 * 113.76043 * 336.73530 * 6 5 4 29 29 H 0.96695 * 113.99955 * 178.09935 * 8 7 6 30 30 H 0.96997 * 120.00382 * 180.02562 * 12 11 9 31 31 H 1.08994 * 113.76088 * 23.26554 * 17 5 4 32 32 H 1.09000 * 113.75747 * 251.90262 * 17 5 4 33 33 H 1.07997 * 120.40180 * 179.97438 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1765 1.1410 0.0000 4 6 3.5013 1.1488 -0.0051 5 7 4.1698 2.3607 -0.0109 6 6 5.6353 2.1579 -0.0094 7 6 5.6889 3.3002 1.0210 8 8 5.8470 4.5948 0.4367 9 6 6.6460 3.0479 2.1573 10 1 7.2143 2.1301 2.1909 11 6 6.7999 3.9908 3.1513 12 7 6.1076 5.1082 3.1107 13 14 7.9921 3.6812 4.5558 14 1 9.3628 3.5060 4.0121 15 1 7.9730 4.8391 5.4854 16 1 7.5884 2.4528 5.2861 17 6 4.2287 2.9402 1.3492 18 7 4.2015 0.0238 0.0007 19 6 3.5938 -1.1509 0.0064 20 6 2.2083 -1.1953 0.0062 21 7 1.4934 -2.4912 0.0123 22 8 0.4580 -2.6127 0.6423 23 8 1.9405 -3.4364 -0.6125 24 1 -0.3634 -0.0957 1.0231 25 1 -0.3633 0.9341 -0.4286 26 1 -0.3634 -0.8382 -0.5946 27 1 6.1131 2.3999 -0.9588 28 1 5.9446 1.1918 0.3896 29 1 5.8520 5.3180 1.0785 30 1 6.2162 5.7717 3.8098 31 1 4.1264 2.2031 2.1455 32 1 3.5825 3.8075 1.4853 33 1 4.1699 -2.0643 0.0107 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186185507.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:32 Heat of formation + Delta-G solvation = 54.341300 kcal Electronic energy + Delta-G solvation = -21729.516219 eV Core-core repulsion = 18182.143466 eV Total energy + Delta-G solvation = -3547.372753 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.52564 -41.48246 -39.23461 -36.72624 -35.12821 -34.56342 -32.77690 -32.27624 -29.46148 -28.53289 -26.35368 -25.60391 -24.64802 -23.66396 -22.10719 -19.52960 -19.22495 -18.88289 -18.35499 -17.94777 -17.09270 -16.56961 -15.79106 -15.28605 -15.06043 -14.43547 -14.04986 -13.83047 -13.34789 -13.10099 -12.92321 -12.81468 -12.22422 -11.96495 -11.70010 -11.64566 -11.30757 -11.21551 -11.10230 -11.03116 -10.95592 -10.64363 -10.45999 -10.27579 -9.81550 -9.53704 -8.88749 -8.78133 -8.30802 -6.48377 -4.59068 -0.29263 0.60223 0.92722 1.20220 3.07210 3.10426 3.16585 3.18574 3.23785 3.58870 3.73455 4.10218 4.18096 4.42779 4.74895 4.90993 5.13328 5.16866 5.25759 5.58623 5.66287 5.71872 5.83277 5.94961 6.13760 6.29644 6.38134 6.53051 6.58432 7.01734 7.29745 7.50301 7.54262 7.71100 7.74298 8.43881 9.11935 9.37557 10.58302 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.027025 B = 0.004377 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.821129 B = 6395.123971 C = 6704.615939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.267 3.733 3 N -0.508 5.508 4 C 0.519 3.481 5 N -0.419 5.419 6 C 0.023 3.977 7 C 0.249 3.751 8 O -0.568 6.568 9 C -0.540 4.540 10 H 0.071 0.929 11 C 0.074 3.926 12 N -0.896 5.896 13 Si 0.908 3.092 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.274 1.274 17 C 0.016 3.984 18 N -0.535 5.535 19 C 0.248 3.752 20 C -0.202 4.202 21 N 0.046 4.954 22 O -0.152 6.152 23 O -0.160 6.160 24 H 0.108 0.892 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.393 0.607 30 H 0.275 0.725 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.221 -8.887 -3.318 11.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.115 3.885 3 N -0.227 5.227 4 C 0.168 3.832 5 N -0.139 5.139 6 C -0.104 4.104 7 C 0.207 3.793 8 O -0.380 6.380 9 C -0.578 4.578 10 H 0.090 0.910 11 C -0.130 4.130 12 N -0.535 5.535 13 Si 0.735 3.265 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.200 1.200 17 C -0.109 4.109 18 N -0.255 5.255 19 C 0.077 3.923 20 C -0.293 4.293 21 N 0.566 4.434 22 O -0.370 6.370 23 O -0.375 6.375 24 H 0.127 0.873 25 H 0.114 0.886 26 H 0.104 0.896 27 H 0.107 0.893 28 H 0.125 0.875 29 H 0.249 0.751 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -6.659 -7.032 -4.283 10.589 hybrid contribution 0.146 -1.405 1.668 2.186 sum -6.512 -8.437 -2.615 10.974 Atomic orbital electron populations 1.21067 0.85819 1.04968 1.05474 1.21657 0.98619 0.85069 0.83112 1.68456 1.08580 1.26758 1.18942 1.22912 0.86849 0.91380 0.82040 1.65607 1.10455 1.10453 1.27364 1.24488 0.82810 1.01053 1.02055 1.19750 0.88608 0.82104 0.88861 1.86069 1.95426 1.16823 1.39682 1.21505 1.24869 1.04937 1.06508 0.91047 1.25084 0.95202 0.94513 0.98152 1.69302 1.40561 1.08337 1.35338 0.86376 0.81213 0.78004 0.80898 1.19663 1.20835 1.19965 1.25129 1.04050 0.98613 0.83118 1.68968 1.39338 0.97677 1.19563 1.23112 0.88472 0.97798 0.82938 1.22606 0.95613 0.85471 1.25650 1.43096 1.00301 1.01779 0.98247 1.94532 1.11856 1.89537 1.41046 1.94555 1.70212 1.30919 1.41843 0.87337 0.88598 0.89576 0.89271 0.87550 0.75094 0.91423 0.91044 0.88979 0.79469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 8.88 36.01 0.32 -0.90 16 2 C 0.27 3.78 6.82 -82.27 -0.56 3.22 16 3 N -0.51 -8.69 10.41 -10.15 -0.11 -8.79 16 4 C 0.52 9.57 6.78 -322.80 -2.19 7.39 16 5 N -0.42 -8.59 6.34 -178.84 -1.13 -9.72 16 6 C 0.02 0.48 7.02 -2.77 -0.02 0.46 16 7 C 0.25 5.85 1.44 -90.84 -0.13 5.71 16 8 O -0.57 -14.21 13.48 -35.23 -0.47 -14.69 16 9 C -0.54 -13.39 8.62 -34.44 -0.30 -13.68 16 10 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 11 C 0.07 1.81 5.40 -17.82 -0.10 1.72 16 12 N -0.90 -22.41 11.08 55.43 0.61 -21.79 16 13 Si 0.91 19.26 29.54 -169.99 -5.02 14.24 16 14 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 15 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 16 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 17 C 0.02 0.34 7.32 -2.77 -0.02 0.32 16 18 N -0.54 -8.90 8.21 -13.93 -0.11 -9.02 16 19 C 0.25 3.39 10.95 -17.22 -0.19 3.20 16 20 C -0.20 -2.80 6.53 -79.69 -0.52 -3.32 16 21 N 0.05 0.62 4.19 34.09 0.14 0.76 16 22 O -0.15 -2.06 16.90 -29.46 -0.50 -2.56 16 23 O -0.16 -2.22 19.00 -29.46 -0.56 -2.78 16 24 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.09 0.83 7.00 -51.93 -0.36 0.47 16 27 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 28 H 0.11 2.10 6.58 -51.93 -0.34 1.76 16 29 H 0.39 9.98 6.45 45.56 0.29 10.27 16 30 H 0.28 6.56 8.31 -40.82 -0.34 6.23 16 31 H 0.07 1.55 7.85 -51.93 -0.41 1.14 16 32 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 33 H 0.19 1.92 8.05 -52.49 -0.42 1.50 16 LS Contribution 294.84 15.07 4.44 4.44 Total: -1.00 -26.43 294.84 -8.89 -35.32 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -2.48 Total: 10.45 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -3.70 Total: 4.13 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.60 Total: -48.56 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -1.53 Total: -20.02 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -26.43 -8.89 -35.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186185507.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.660 kcal (2) G-P(sol) polarization free energy of solvation -26.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds