Wall clock time and date at job start Tue Mar 31 2020 01:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32292 * 120.40323 * 2 1 4 4 C 1.32480 * 120.74144 * 180.25499 * 3 2 1 5 5 N 1.38405 * 119.22100 * 179.71552 * 4 3 2 6 6 C 1.47952 * 111.00276 * 179.72994 * 5 4 3 7 7 C 1.53933 * 86.18298 * 222.41953 * 6 5 4 8 8 O 1.42903 * 113.73060 * 269.26029 * 7 6 5 9 9 C 1.50693 * 113.73787 * 138.08155 * 7 6 5 10 10 H 1.08001 * 119.99966 * 359.97438 * 9 7 6 11 11 C 1.37876 * 120.00011 * 179.72766 * 9 7 6 12 12 N 1.31512 * 120.00345 * 0.26947 * 11 9 7 13 13 Si 1.86806 * 119.99850 * 180.27520 * 11 9 7 14 14 H 1.48498 * 109.47331 * 59.99508 * 13 11 9 15 15 H 1.48499 * 109.46837 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47052 * 299.99520 * 13 11 9 17 17 C 1.47958 * 110.99721 * 80.36885 * 5 4 3 18 18 N 1.32514 * 121.56084 * 359.44097 * 4 3 2 19 19 C 1.32264 * 120.74306 * 0.27490 * 18 4 3 20 20 C 1.38586 * 120.39845 * 179.70362 * 2 1 3 21 21 N 1.48002 * 120.71894 * 0.02562 * 20 2 1 22 22 O 1.21806 * 120.00263 * 323.34309 * 21 20 2 23 23 O 1.21803 * 120.00102 * 143.35167 * 21 20 2 24 24 H 1.08996 * 109.47430 * 264.65564 * 1 2 3 25 25 H 1.09004 * 109.46826 * 24.65026 * 1 2 3 26 26 H 1.08998 * 109.47494 * 144.64947 * 1 2 3 27 27 H 1.09005 * 113.75946 * 108.09608 * 6 5 4 28 28 H 1.09007 * 113.76043 * 336.73530 * 6 5 4 29 29 H 0.96695 * 113.99955 * 178.09935 * 8 7 6 30 30 H 0.96997 * 120.00382 * 180.02562 * 12 11 9 31 31 H 1.08994 * 113.76088 * 23.26554 * 17 5 4 32 32 H 1.09000 * 113.75747 * 251.90262 * 17 5 4 33 33 H 1.07997 * 120.40180 * 179.97438 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1765 1.1410 0.0000 4 6 3.5013 1.1488 -0.0051 5 7 4.1698 2.3607 -0.0109 6 6 5.6353 2.1579 -0.0094 7 6 5.6889 3.3002 1.0210 8 8 5.8470 4.5948 0.4367 9 6 6.6460 3.0479 2.1573 10 1 7.2143 2.1301 2.1909 11 6 6.7999 3.9908 3.1513 12 7 6.1076 5.1082 3.1107 13 14 7.9921 3.6812 4.5558 14 1 9.3628 3.5060 4.0121 15 1 7.9730 4.8391 5.4854 16 1 7.5884 2.4528 5.2861 17 6 4.2287 2.9402 1.3492 18 7 4.2015 0.0238 0.0007 19 6 3.5938 -1.1509 0.0064 20 6 2.2083 -1.1953 0.0062 21 7 1.4934 -2.4912 0.0123 22 8 0.4580 -2.6127 0.6423 23 8 1.9405 -3.4364 -0.6125 24 1 -0.3634 -0.0957 1.0231 25 1 -0.3633 0.9341 -0.4286 26 1 -0.3634 -0.8382 -0.5946 27 1 6.1131 2.3999 -0.9588 28 1 5.9446 1.1918 0.3896 29 1 5.8520 5.3180 1.0785 30 1 6.2162 5.7717 3.8098 31 1 4.1264 2.2031 2.1455 32 1 3.5825 3.8075 1.4853 33 1 4.1699 -2.0643 0.0107 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186185507.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:32 Heat of formation + Delta-G solvation = 36.899795 kcal Electronic energy + Delta-G solvation = -21730.272540 eV Core-core repulsion = 18182.143466 eV Total energy + Delta-G solvation = -3548.129074 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.67908 -42.75504 -40.76548 -37.82520 -36.71197 -35.88140 -34.23058 -34.04164 -30.49778 -30.10017 -27.83272 -27.22892 -26.12433 -24.80095 -23.44068 -20.93940 -20.44649 -20.27336 -19.75691 -19.38062 -18.25579 -18.13184 -17.26728 -17.02681 -16.47311 -15.90917 -15.57354 -14.99897 -14.78282 -14.43223 -14.27780 -13.79658 -13.64024 -13.59846 -13.37872 -12.96599 -12.80277 -12.78238 -12.35857 -12.31200 -12.29936 -12.19896 -12.09516 -11.72097 -11.37216 -10.89935 -10.71800 -10.46333 -10.01236 -8.33081 -6.50758 -1.47308 -0.53579 -0.22865 0.06272 1.42597 1.44918 1.52362 1.77621 1.97641 2.34615 2.40703 2.67534 2.90318 3.01939 3.08789 3.70300 3.89360 3.91546 4.03574 4.24029 4.33872 4.38554 4.44595 4.70949 4.74964 4.84288 4.85928 5.06182 5.19519 5.27105 5.66249 5.79418 5.85412 6.39866 6.45855 6.54765 7.22805 7.42367 8.72774 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.027025 B = 0.004377 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.821129 B = 6395.123971 C = 6704.615939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.264 3.736 3 N -0.526 5.526 4 C 0.504 3.496 5 N -0.429 5.429 6 C 0.036 3.964 7 C 0.228 3.772 8 O -0.579 6.579 9 C -0.560 4.560 10 H 0.071 0.929 11 C 0.033 3.967 12 N -0.915 5.915 13 Si 0.967 3.033 14 H -0.270 1.270 15 H -0.280 1.280 16 H -0.271 1.271 17 C 0.029 3.971 18 N -0.548 5.548 19 C 0.252 3.748 20 C -0.198 4.198 21 N 0.048 4.952 22 O -0.142 6.142 23 O -0.162 6.162 24 H 0.125 0.875 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.114 0.886 29 H 0.388 0.612 30 H 0.277 0.723 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.826 -10.669 -3.066 13.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.114 3.886 3 N -0.246 5.246 4 C 0.152 3.848 5 N -0.149 5.149 6 C -0.091 4.091 7 C 0.186 3.814 8 O -0.391 6.391 9 C -0.598 4.598 10 H 0.089 0.911 11 C -0.168 4.168 12 N -0.555 5.555 13 Si 0.792 3.208 14 H -0.195 1.195 15 H -0.205 1.205 16 H -0.197 1.197 17 C -0.097 4.097 18 N -0.268 5.268 19 C 0.082 3.918 20 C -0.288 4.288 21 N 0.569 4.431 22 O -0.362 6.362 23 O -0.376 6.376 24 H 0.143 0.857 25 H 0.123 0.877 26 H 0.116 0.884 27 H 0.109 0.891 28 H 0.132 0.868 29 H 0.243 0.757 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -7.277 -8.864 -4.062 12.166 hybrid contribution 0.206 -0.989 1.557 1.856 sum -7.071 -9.852 -2.505 12.383 Atomic orbital electron populations 1.21233 0.83196 1.05998 1.06699 1.22220 1.00143 0.84427 0.81810 1.68446 1.08109 1.28306 1.19735 1.22711 0.87452 0.91185 0.83446 1.65480 1.10349 1.12306 1.26789 1.24339 0.83392 1.00156 1.01252 1.20025 0.89493 0.82044 0.89826 1.86051 1.95648 1.17480 1.39898 1.21754 1.25558 1.05194 1.07282 0.91081 1.25776 0.96524 0.94335 1.00147 1.69375 1.41393 1.08835 1.35927 0.85458 0.79223 0.77853 0.78243 1.19495 1.20540 1.19653 1.24737 1.02693 0.98137 0.84155 1.68918 1.39643 0.98048 1.20193 1.23641 0.88875 0.97855 0.81428 1.22681 0.95819 0.85730 1.24557 1.43004 1.00284 1.01533 0.98296 1.94539 1.11571 1.89405 1.40695 1.94571 1.70322 1.30719 1.42001 0.85711 0.87693 0.88391 0.89137 0.86804 0.75738 0.91283 0.91531 0.90274 0.76097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.10 8.88 71.24 0.63 -1.47 16 2 C 0.26 6.96 6.82 42.57 0.29 7.25 16 3 N -0.53 -17.50 10.41 -186.04 -1.94 -19.44 16 4 C 0.50 18.32 6.78 261.48 1.77 20.09 16 5 N -0.43 -17.71 6.34 -722.95 -4.58 -22.29 16 6 C 0.04 1.49 7.02 86.41 0.61 2.10 16 7 C 0.23 10.88 1.44 -10.90 -0.02 10.86 16 8 O -0.58 -29.73 13.48 -148.98 -2.01 -31.73 16 9 C -0.56 -27.98 8.62 25.60 0.22 -27.76 16 10 H 0.07 3.45 7.81 -2.91 -0.02 3.43 16 11 C 0.03 1.63 5.40 84.65 0.46 2.09 16 12 N -0.92 -46.32 11.08 21.45 0.24 -46.08 16 13 Si 0.97 39.29 29.54 68.60 2.03 41.32 16 14 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 15 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 16 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 17 C 0.03 1.28 7.32 86.41 0.63 1.91 16 18 N -0.55 -17.52 8.21 -197.98 -1.62 -19.15 16 19 C 0.25 6.30 10.95 84.72 0.93 7.22 16 20 C -0.20 -4.98 6.53 36.55 0.24 -4.74 16 21 N 0.05 1.15 4.19 -46.06 -0.19 0.96 16 22 O -0.14 -3.40 16.90 18.88 0.32 -3.08 16 23 O -0.16 -4.02 19.00 18.88 0.36 -3.66 16 24 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.10 1.59 7.00 -2.39 -0.02 1.58 16 27 H 0.09 3.65 8.14 -2.38 -0.02 3.63 16 28 H 0.11 4.47 6.58 -2.38 -0.02 4.45 16 29 H 0.39 20.31 6.45 -74.06 -0.48 19.84 16 30 H 0.28 13.30 8.31 -92.71 -0.77 12.53 16 31 H 0.07 2.95 7.85 -2.39 -0.02 2.93 16 32 H 0.08 3.64 8.14 -2.39 -0.02 3.62 16 33 H 0.22 3.83 8.05 -2.91 -0.02 3.81 16 Total: -1.00 -55.82 294.84 -0.95 -56.77 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 0.70 Total: 28.83 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: 5.76 Total: 17.56 kcal Atomic # 7 Polarization: -97.90 SS G_CDS: -8.10 Total: -106.00 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -1.33 Total: -38.47 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Total: -55.82 -0.95 -56.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186185507.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.666 kcal (2) G-P(sol) polarization free energy of solvation -55.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds