Wall clock time and date at job start Tue Mar 31 2020 01:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 119.99632 * 2 1 4 4 C 1.52998 * 109.47137 * 125.00022 * 3 2 1 5 5 H 1.09001 * 109.47411 * 55.00017 * 4 3 2 6 6 O 1.42906 * 109.47205 * 294.99818 * 4 3 2 7 7 C 1.42900 * 113.99774 * 90.00138 * 6 4 3 8 8 C 1.52998 * 109.46835 * 180.02562 * 7 6 4 9 9 C 1.50694 * 109.47157 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00103 * 0.02562 * 9 8 7 11 11 C 1.37881 * 120.00327 * 179.97438 * 9 8 7 12 12 N 1.31520 * 119.99715 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00308 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47330 * 60.00146 * 13 11 9 15 15 H 1.48500 * 109.47186 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47054 * 300.00203 * 13 11 9 17 17 C 1.50696 * 109.47396 * 174.99920 * 4 3 2 18 18 C 1.38247 * 119.98658 * 265.00270 * 17 4 3 19 19 C 1.38216 * 120.01497 * 179.97438 * 18 17 4 20 20 C 1.38357 * 119.98603 * 0.02562 * 19 18 17 21 21 Cl 1.73599 * 120.01134 * 180.02562 * 20 19 18 22 22 C 1.38347 * 119.97107 * 0.28224 * 20 19 18 23 23 C 1.38219 * 119.98930 * 359.40143 * 22 20 19 24 24 H 1.08002 * 119.99522 * 180.02562 * 1 2 3 25 25 H 1.07994 * 120.00135 * 0.02562 * 1 2 3 26 26 H 1.07994 * 120.00135 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47543 * 4.99689 * 3 2 1 28 28 H 1.09003 * 109.46922 * 244.99754 * 3 2 1 29 29 H 1.09004 * 109.46636 * 299.99900 * 7 6 4 30 30 H 1.08995 * 109.47586 * 60.00284 * 7 6 4 31 31 H 1.08997 * 109.47003 * 299.99614 * 8 7 6 32 32 H 1.09003 * 109.47384 * 59.99523 * 8 7 6 33 33 H 0.96999 * 120.00093 * 179.97438 * 12 11 9 34 34 H 1.08003 * 119.99321 * 359.97438 * 18 17 4 35 35 H 1.08002 * 120.00776 * 180.02562 * 19 18 17 36 36 H 1.08000 * 120.00661 * 179.71600 * 22 20 19 37 37 H 1.07997 * 119.99445 * 180.32231 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 1 3.6827 0.4574 1.1404 6 8 2.2971 1.3226 2.4054 7 6 2.0266 0.0132 2.9097 8 6 1.2358 0.1228 4.2149 9 6 0.9500 -1.2580 4.7465 10 1 1.2980 -2.1268 4.2076 11 6 0.2451 -1.4122 5.9214 12 7 -0.1782 -0.3542 6.5779 13 14 -0.1085 -3.1238 6.5807 14 1 1.1724 -3.8306 6.8355 15 1 -0.8762 -3.0175 7.8474 16 1 -0.9034 -3.8841 5.5830 17 6 3.8746 2.5826 1.1121 18 6 5.1205 2.5454 0.5142 19 6 5.8909 3.6912 0.4496 20 6 5.4151 4.8754 0.9841 21 17 6.3819 6.3150 0.9028 22 6 4.1709 4.9104 1.5880 23 6 3.3987 3.7656 1.6461 24 1 -0.5399 -0.9354 0.0004 25 1 -0.5400 0.9352 -0.0004 26 1 1.8500 -0.9352 0.0004 27 1 1.3585 2.1317 0.0895 28 1 2.6213 1.4026 -0.9314 29 1 1.4431 -0.5447 2.1774 30 1 2.9668 -0.5055 3.0967 31 1 1.8190 0.6809 4.9473 32 1 0.2956 0.6415 4.0276 33 1 -0.6744 -0.4626 7.4043 34 1 5.4920 1.6209 0.0974 35 1 6.8641 3.6621 -0.0179 36 1 3.8009 5.8334 2.0094 37 1 2.4252 3.7941 2.1129 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205647478.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:01 Heat of formation + Delta-G solvation = -26.075138 kcal Electronic energy + Delta-G solvation = -18895.887034 eV Core-core repulsion = 15856.983919 eV Total energy + Delta-G solvation = -3038.903115 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.097 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.72807 -37.82462 -36.48396 -34.39120 -33.22269 -31.91230 -31.12918 -29.67124 -27.99402 -24.73817 -23.62223 -22.86335 -20.93957 -20.83208 -19.58317 -17.27556 -16.74224 -15.92553 -15.62160 -15.36124 -14.86742 -14.58888 -14.38010 -14.00480 -13.58059 -13.54123 -13.14406 -12.76064 -12.44293 -12.23387 -11.73590 -11.62055 -11.48749 -11.27132 -10.99886 -10.92484 -10.83968 -10.59503 -10.51354 -10.31677 -9.67563 -9.40654 -9.21284 -9.09349 -8.73931 -8.47682 -8.29840 -6.03686 -4.07200 1.04409 1.24330 2.01788 2.51741 3.31069 3.35601 3.37369 3.55116 4.11364 4.45249 4.74642 4.79931 4.83652 5.09506 5.20337 5.29654 5.32387 5.40029 5.49869 5.52180 5.62299 5.72113 5.91006 6.05794 6.11699 6.15930 6.19836 6.28413 6.37230 6.52296 6.73565 6.83840 6.90130 6.97216 7.52993 7.79179 7.80866 8.09559 8.35511 8.99051 9.56347 11.07897 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.021051 B = 0.003544 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.802217 B = 7898.427253 C = 8739.536984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.157 4.157 3 C -0.107 4.107 4 C 0.130 3.870 5 H 0.067 0.933 6 O -0.377 6.377 7 C 0.064 3.936 8 C 0.028 3.972 9 C -0.523 4.523 10 H 0.055 0.945 11 C 0.060 3.940 12 N -0.891 5.891 13 Si 0.895 3.105 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.276 1.276 17 C -0.072 4.072 18 C -0.102 4.102 19 C -0.114 4.114 20 C -0.038 4.038 21 Cl -0.080 7.080 22 C -0.113 4.113 23 C -0.076 4.076 24 H 0.097 0.903 25 H 0.095 0.905 26 H 0.106 0.894 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.047 0.953 30 H 0.032 0.968 31 H 0.022 0.978 32 H 0.024 0.976 33 H 0.262 0.738 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.599 8.131 -15.171 19.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.175 4.175 3 C -0.144 4.144 4 C 0.071 3.929 5 H 0.085 0.915 6 O -0.297 6.297 7 C -0.011 4.011 8 C -0.009 4.009 9 C -0.561 4.561 10 H 0.073 0.927 11 C -0.142 4.142 12 N -0.530 5.530 13 Si 0.723 3.277 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.072 4.072 18 C -0.121 4.121 19 C -0.133 4.133 20 C -0.064 4.064 21 Cl -0.051 7.051 22 C -0.132 4.132 23 C -0.094 4.094 24 H 0.115 0.885 25 H 0.113 0.887 26 H 0.124 0.876 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.040 0.960 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.520 8.482 -14.910 19.619 hybrid contribution -0.037 -1.067 0.402 1.141 sum 9.483 7.416 -14.508 18.852 Atomic orbital electron populations 1.23794 0.95877 1.01829 1.00223 1.22743 0.96251 0.97769 1.00700 1.21257 0.98801 0.96584 0.97794 1.20722 0.91604 0.94083 0.86497 0.91500 1.87954 1.74092 1.30890 1.36757 1.23077 0.98316 0.81771 0.97926 1.19031 0.95106 0.97375 0.89408 1.20995 1.35607 0.91966 1.07564 0.92707 1.24983 0.95665 0.96871 0.96696 1.69969 1.37518 1.28774 1.16690 0.86611 0.78426 0.84431 0.78255 1.20183 1.21184 1.20187 1.20007 0.94350 0.95365 0.97507 1.20933 0.93442 0.98106 0.99572 1.20937 1.00479 0.91128 1.00758 1.20936 0.93713 0.88154 1.03624 1.98357 1.71282 1.38206 1.97288 1.21109 0.92841 0.99655 0.99547 1.21100 1.00490 0.90867 0.96940 0.88497 0.88673 0.87595 0.90583 0.90625 0.93483 0.95009 0.95967 0.95809 0.92809 0.85122 0.85086 0.84953 0.84079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 14.12 29.01 0.41 -2.08 16 2 C -0.16 -2.12 6.89 -36.03 -0.25 -2.37 16 3 C -0.11 -1.37 5.35 -27.89 -0.15 -1.52 16 4 C 0.13 1.88 2.53 -27.89 -0.07 1.81 16 5 H 0.07 0.92 7.70 -51.93 -0.40 0.52 16 6 O -0.38 -7.19 9.09 -35.23 -0.32 -7.51 16 7 C 0.06 1.37 5.46 37.16 0.20 1.57 16 8 C 0.03 0.74 5.34 -27.89 -0.15 0.59 16 9 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 10 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 13 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 C -0.07 -0.95 5.01 -104.62 -0.52 -1.48 16 18 C -0.10 -1.14 9.68 -39.59 -0.38 -1.52 16 19 C -0.11 -1.22 9.83 -39.55 -0.39 -1.61 16 20 C -0.04 -0.44 6.32 -39.50 -0.25 -0.69 16 21 Cl -0.08 -0.84 28.96 -51.86 -1.50 -2.34 16 22 C -0.11 -1.35 9.83 -39.55 -0.39 -1.74 16 23 C -0.08 -1.02 9.35 -39.59 -0.37 -1.39 16 24 H 0.10 1.27 8.06 -52.49 -0.42 0.85 16 25 H 0.09 1.27 7.84 -52.49 -0.41 0.86 16 26 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 27 H 0.08 1.01 7.79 -51.93 -0.40 0.60 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.95 5.50 -51.93 -0.29 0.67 16 30 H 0.03 0.66 8.08 -51.93 -0.42 0.24 16 31 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 37 H 0.14 1.99 7.63 -52.49 -0.40 1.59 16 LS Contribution 331.78 15.07 5.00 5.00 Total: -1.00 -30.19 331.78 -9.07 -39.26 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -5.25 Total: -0.91 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -2.72 Total: -23.89 kcal Atomic # 7 Polarization: -26.80 SS G_CDS: 0.74 Total: -26.06 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.32 Total: -7.51 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.50 Total: -2.34 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.19 -9.07 -39.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205647478.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.183 kcal (2) G-P(sol) polarization free energy of solvation -30.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds