Wall clock time and date at job start Tue Mar 31 2020 01:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39723 * 120.58873 * 105.79622 * 3 2 1 5 5 C 1.38535 * 118.37185 * 180.26068 * 4 3 2 6 6 C 1.38228 * 119.47442 * 359.75166 * 5 4 3 7 7 N 1.31940 * 121.17638 * 359.97438 * 6 5 4 8 8 C 1.32333 * 121.77118 * 0.02562 * 7 6 5 9 9 N 1.38774 * 119.80640 * 179.97438 * 8 7 6 10 10 C 1.39839 * 120.00120 * 6.64899 * 9 8 7 11 11 C 1.38765 * 120.10552 * 28.62100 * 10 9 8 12 12 C 1.38181 * 119.99311 * 180.02562 * 11 10 9 13 13 C 1.38353 * 120.20476 * 0.02562 * 12 11 10 14 14 C 1.38174 * 120.21048 * 359.67758 * 13 12 11 15 15 C 1.38721 * 120.00445 * 0.59687 * 14 13 12 16 16 O 1.35789 * 120.10240 * 179.70265 * 15 14 13 17 17 C 1.34806 * 116.99824 * 6.56648 * 16 15 14 18 18 H 1.07996 * 119.99893 * 354.79424 * 17 16 15 19 19 C 1.38621 * 120.00021 * 174.80165 * 17 16 15 20 20 N 1.31580 * 119.99932 * 0.26865 * 19 17 16 21 21 Si 1.86801 * 120.00204 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46956 * 89.99627 * 21 19 17 23 23 H 1.48495 * 109.47176 * 209.99658 * 21 19 17 24 24 H 1.48498 * 109.46924 * 329.99698 * 21 19 17 25 25 H 4.52967 * 13.90518 * 0.02562 * 4 2 1 26 26 H 1.07995 * 120.81742 * 0.02562 * 4 3 2 27 27 H 1.08001 * 120.26178 * 179.72739 * 5 4 3 28 28 H 1.08003 * 119.41102 * 179.97438 * 6 5 4 29 29 H 0.96994 * 120.00194 * 186.64525 * 9 8 7 30 30 H 1.08010 * 120.00058 * 0.04230 * 11 10 9 31 31 H 1.08000 * 119.89341 * 179.97438 * 12 11 10 32 32 H 1.07999 * 119.88874 * 179.97438 * 13 12 11 33 33 H 1.07999 * 119.99323 * 180.32210 * 14 13 12 34 34 H 0.96999 * 119.99752 * 359.73431 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.3169 0.3284 -1.1574 5 6 4.7013 0.3091 -1.1073 6 6 5.3345 -0.0252 0.0750 7 7 4.6440 -0.3262 1.1583 8 6 3.3206 -0.3228 1.1643 9 7 2.6353 -0.6466 2.3268 10 6 3.3365 -0.8389 3.5213 11 6 4.5357 -0.1755 3.7391 12 6 5.2269 -0.3677 4.9200 13 6 4.7275 -1.2210 5.8879 14 6 3.5311 -1.8811 5.6825 15 6 2.8329 -1.6990 4.4977 16 8 1.6600 -2.3515 4.2912 17 6 1.1599 -3.0540 5.3274 18 1 1.7291 -3.1490 6.2402 19 6 -0.0849 -3.6545 5.2211 20 7 -0.7761 -3.5433 4.1070 21 14 -0.7777 -4.6286 6.6566 22 1 -1.5640 -3.7251 7.5344 23 1 -1.6576 -5.7090 6.1430 24 1 0.3379 -5.2261 7.4336 25 1 -1.0500 0.0004 0.0004 26 1 2.8000 0.5867 -2.0697 27 1 5.2811 0.5529 -1.9853 28 1 6.4138 -0.0404 0.1128 29 1 1.6700 -0.7394 2.3108 30 1 4.9286 0.4912 2.9856 31 1 6.1603 0.1491 5.0877 32 1 5.2721 -1.3678 6.8089 33 1 3.1419 -2.5424 6.4425 34 1 -0.4162 -3.0378 3.3614 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212596413.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:48 Heat of formation + Delta-G solvation = 98.629483 kcal Electronic energy + Delta-G solvation = -20466.492028 eV Core-core repulsion = 17331.889017 eV Total energy + Delta-G solvation = -3134.603011 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.41835 -39.08637 -36.70432 -35.21700 -34.08378 -32.31211 -31.40726 -30.12790 -29.14564 -27.74724 -25.01766 -24.06071 -23.12169 -21.55931 -21.01095 -18.98079 -18.37718 -17.59293 -17.44904 -16.18561 -15.62984 -15.23007 -14.84853 -14.58889 -14.31497 -14.06273 -13.77301 -13.69583 -13.40733 -12.90609 -12.81214 -12.30185 -11.70070 -11.51861 -11.27977 -10.97107 -10.78186 -10.61062 -10.58029 -10.48122 -10.33254 -9.57650 -9.38260 -9.10513 -8.79448 -8.41012 -7.59125 -6.80866 -6.75750 -4.07439 0.94732 1.40671 2.26232 2.33741 2.84847 3.20246 3.22182 3.28058 3.40802 3.42744 4.08631 4.14168 4.34838 4.59893 4.69635 4.90645 5.00123 5.14193 5.23361 5.29019 5.53273 5.68361 5.78288 5.97241 6.01073 6.06179 6.26805 6.29728 6.41692 6.66558 6.77672 6.87736 7.08598 7.33135 7.40803 7.54942 7.64515 7.69154 7.83517 8.33505 8.40102 8.89058 9.55849 10.64273 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.016573 B = 0.005726 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.044893 B = 4889.210246 C = 6356.282218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.146 4.146 3 C -0.111 4.111 4 C -0.011 4.011 5 C -0.244 4.244 6 C 0.156 3.844 7 N -0.527 5.527 8 C 0.423 3.577 9 N -0.629 5.629 10 C 0.077 3.923 11 C -0.077 4.077 12 C -0.191 4.191 13 C -0.090 4.090 14 C -0.215 4.215 15 C 0.132 3.868 16 O -0.206 6.206 17 C -0.468 4.468 18 H 0.084 0.916 19 C 0.010 3.990 20 N -0.882 5.882 21 Si 1.098 2.902 22 H -0.281 1.281 23 H -0.276 1.276 24 H -0.282 1.282 25 H 0.225 0.775 26 H 0.134 0.866 27 H 0.133 0.867 28 H 0.157 0.843 29 H 0.421 0.579 30 H 0.134 0.866 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.131 0.869 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.961 7.496 -6.769 12.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.147 4.147 3 C -0.118 4.118 4 C -0.036 4.036 5 C -0.267 4.267 6 C -0.003 4.003 7 N -0.243 5.243 8 C 0.186 3.814 9 N -0.250 5.250 10 C -0.018 4.018 11 C -0.097 4.097 12 C -0.211 4.211 13 C -0.109 4.109 14 C -0.235 4.235 15 C 0.078 3.922 16 O -0.111 6.111 17 C -0.544 4.544 18 H 0.102 0.898 19 C -0.195 4.195 20 N -0.515 5.515 21 Si 0.923 3.077 22 H -0.207 1.207 23 H -0.201 1.201 24 H -0.208 1.208 25 H 0.241 0.759 26 H 0.151 0.849 27 H 0.151 0.849 28 H 0.174 0.826 29 H 0.260 0.740 30 H 0.151 0.849 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.148 0.852 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.942 6.298 -5.568 10.903 hybrid contribution 0.458 0.976 -1.176 1.596 sum 7.401 7.275 -6.744 12.376 Atomic orbital electron populations 1.24881 0.95725 1.00524 0.98266 1.19647 0.91558 1.01223 1.02263 1.16112 0.87569 1.13354 0.94778 1.21335 0.93837 0.92328 0.96139 1.21684 0.94550 1.10288 1.00137 1.22625 0.99911 0.90614 0.87179 1.67560 1.05491 1.21155 1.30127 1.18394 0.88305 0.89439 0.85247 1.41870 1.09356 1.69624 1.04152 1.16957 0.96882 1.01337 0.86667 1.20775 0.93407 0.98552 0.96999 1.20525 1.01338 1.04157 0.95063 1.20777 0.95284 0.96615 0.98240 1.20979 0.97554 1.06293 0.98671 1.18994 0.88559 0.91073 0.93564 1.83601 1.31492 1.56878 1.39128 1.22203 1.04867 1.32905 0.94457 0.89833 1.26509 0.91533 0.97994 1.03479 1.70572 1.39364 1.37550 1.03976 0.83051 0.76053 0.76023 0.72607 1.20732 1.20095 1.20814 0.75872 0.84850 0.84901 0.82554 0.73994 0.84859 0.87230 0.87323 0.85152 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.58 19.25 29.55 0.57 -2.01 16 2 C -0.15 -2.40 12.04 -38.84 -0.47 -2.87 16 3 C -0.11 -1.81 5.76 -106.61 -0.61 -2.42 16 4 C -0.01 -0.14 9.89 -38.92 -0.39 -0.52 16 5 C -0.24 -2.75 10.09 -39.48 -0.40 -3.15 16 6 C 0.16 2.00 11.16 -17.51 -0.20 1.81 16 7 N -0.53 -8.93 6.83 -12.15 -0.08 -9.02 16 8 C 0.42 7.78 7.24 -154.82 -1.12 6.66 16 9 N -0.63 -13.06 5.30 -9.62 -0.05 -13.11 16 10 C 0.08 1.69 6.39 -83.53 -0.53 1.16 16 11 C -0.08 -1.50 8.60 -39.41 -0.34 -1.83 16 12 C -0.19 -3.46 10.04 -39.56 -0.40 -3.86 16 13 C -0.09 -1.70 10.04 -39.56 -0.40 -2.10 16 14 C -0.21 -4.79 9.16 -39.43 -0.36 -5.15 16 15 C 0.13 3.24 6.66 -38.92 -0.26 2.98 16 16 O -0.21 -5.71 8.63 0.00 0.00 -5.71 16 17 C -0.47 -13.08 9.49 30.87 0.29 -12.79 16 18 H 0.08 2.21 5.21 -52.49 -0.27 1.94 16 19 C 0.01 0.27 5.49 -17.52 -0.10 0.17 16 20 N -0.88 -25.98 13.70 55.48 0.76 -25.22 16 21 Si 1.10 23.70 29.92 -169.99 -5.09 18.62 16 22 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 25 H 0.22 2.45 7.80 -54.09 -0.42 2.03 16 26 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 27 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 28 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 29 H 0.42 9.02 7.29 -40.82 -0.30 8.72 16 30 H 0.13 2.44 5.93 -52.48 -0.31 2.13 16 31 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.13 2.91 5.65 -52.49 -0.30 2.61 16 34 H 0.28 8.40 7.97 -40.82 -0.33 8.08 16 LS Contribution 307.14 15.07 4.63 4.63 Total: -1.00 -31.95 307.14 -7.37 -39.32 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -2.84 Total: 14.44 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: -4.70 Total: -23.94 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: 0.63 Total: -47.35 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: 0.00 Total: -5.71 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -5.09 Total: 18.62 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.95 -7.37 -39.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212596413.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.945 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds