Wall clock time and date at job start Tue Mar 31 2020 01:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39723 * 120.58873 * 105.79622 * 3 2 1 5 5 C 1.38535 * 118.37185 * 180.26068 * 4 3 2 6 6 C 1.38228 * 119.47442 * 359.75166 * 5 4 3 7 7 N 1.31940 * 121.17638 * 359.97438 * 6 5 4 8 8 C 1.32333 * 121.77118 * 0.02562 * 7 6 5 9 9 N 1.38774 * 119.80640 * 179.97438 * 8 7 6 10 10 C 1.39839 * 120.00120 * 6.64899 * 9 8 7 11 11 C 1.38765 * 120.10552 * 28.62100 * 10 9 8 12 12 C 1.38181 * 119.99311 * 180.02562 * 11 10 9 13 13 C 1.38353 * 120.20476 * 0.02562 * 12 11 10 14 14 C 1.38174 * 120.21048 * 359.67758 * 13 12 11 15 15 C 1.38721 * 120.00445 * 0.59687 * 14 13 12 16 16 O 1.35789 * 120.10240 * 179.70265 * 15 14 13 17 17 C 1.34806 * 116.99824 * 6.56648 * 16 15 14 18 18 H 1.07996 * 119.99893 * 354.79424 * 17 16 15 19 19 C 1.38621 * 120.00021 * 174.80165 * 17 16 15 20 20 N 1.31580 * 119.99932 * 0.26865 * 19 17 16 21 21 Si 1.86801 * 120.00204 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46956 * 89.99627 * 21 19 17 23 23 H 1.48495 * 109.47176 * 209.99658 * 21 19 17 24 24 H 1.48498 * 109.46924 * 329.99698 * 21 19 17 25 25 H 4.52967 * 13.90518 * 0.02562 * 4 2 1 26 26 H 1.07995 * 120.81742 * 0.02562 * 4 3 2 27 27 H 1.08001 * 120.26178 * 179.72739 * 5 4 3 28 28 H 1.08003 * 119.41102 * 179.97438 * 6 5 4 29 29 H 0.96994 * 120.00194 * 186.64525 * 9 8 7 30 30 H 1.08010 * 120.00058 * 0.04230 * 11 10 9 31 31 H 1.08000 * 119.89341 * 179.97438 * 12 11 10 32 32 H 1.07999 * 119.88874 * 179.97438 * 13 12 11 33 33 H 1.07999 * 119.99323 * 180.32210 * 14 13 12 34 34 H 0.96999 * 119.99752 * 359.73431 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.3169 0.3284 -1.1574 5 6 4.7013 0.3091 -1.1073 6 6 5.3345 -0.0252 0.0750 7 7 4.6440 -0.3262 1.1583 8 6 3.3206 -0.3228 1.1643 9 7 2.6353 -0.6466 2.3268 10 6 3.3365 -0.8389 3.5213 11 6 4.5357 -0.1755 3.7391 12 6 5.2269 -0.3677 4.9200 13 6 4.7275 -1.2210 5.8879 14 6 3.5311 -1.8811 5.6825 15 6 2.8329 -1.6990 4.4977 16 8 1.6600 -2.3515 4.2912 17 6 1.1599 -3.0540 5.3274 18 1 1.7291 -3.1490 6.2402 19 6 -0.0849 -3.6545 5.2211 20 7 -0.7761 -3.5433 4.1070 21 14 -0.7777 -4.6286 6.6566 22 1 -1.5640 -3.7251 7.5344 23 1 -1.6576 -5.7090 6.1430 24 1 0.3379 -5.2261 7.4336 25 1 -1.0500 0.0004 0.0004 26 1 2.8000 0.5867 -2.0697 27 1 5.2811 0.5529 -1.9853 28 1 6.4138 -0.0404 0.1128 29 1 1.6700 -0.7394 2.3108 30 1 4.9286 0.4912 2.9856 31 1 6.1603 0.1491 5.0877 32 1 5.2721 -1.3678 6.8089 33 1 3.1419 -2.5424 6.4425 34 1 -0.4162 -3.0378 3.3614 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212596413.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:48 Heat of formation + Delta-G solvation = 80.219498 kcal Electronic energy + Delta-G solvation = -20467.290345 eV Core-core repulsion = 17331.889017 eV Total energy + Delta-G solvation = -3135.401327 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.72111 -40.68602 -38.41904 -36.60842 -35.27268 -34.30823 -32.57934 -31.45365 -30.76293 -29.20759 -26.99486 -25.20634 -24.44886 -23.23292 -22.49055 -20.39277 -20.00261 -19.15884 -18.73513 -17.78437 -16.94802 -16.58212 -16.33830 -15.96913 -15.73853 -15.65788 -15.47749 -15.23962 -14.83930 -14.55864 -14.03867 -13.35952 -13.29003 -12.97186 -12.66280 -12.58434 -12.38973 -12.29384 -12.02973 -11.94632 -11.77676 -11.41490 -10.77144 -10.52338 -10.34234 -9.78290 -9.24254 -8.93755 -8.29822 -6.21518 -0.19018 0.21567 0.64243 0.80955 1.47157 1.60275 1.64112 1.75687 2.00287 2.04250 2.34224 2.83192 3.00100 3.17409 3.23991 3.26149 3.58953 3.88645 4.07688 4.13887 4.24550 4.35240 4.49898 4.54972 4.65952 4.83210 4.98521 5.00494 5.11108 5.20459 5.28090 5.45905 5.52858 5.66685 5.72652 5.99638 6.13690 6.24591 6.37983 6.48008 6.86548 7.10065 7.61440 8.50835 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.016573 B = 0.005726 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.044893 B = 4889.210246 C = 6356.282218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.185 4.185 3 C -0.129 4.129 4 C -0.012 4.012 5 C -0.215 4.215 6 C 0.147 3.853 7 N -0.549 5.549 8 C 0.391 3.609 9 N -0.650 5.650 10 C 0.077 3.923 11 C -0.083 4.083 12 C -0.165 4.165 13 C -0.092 4.092 14 C -0.225 4.225 15 C 0.084 3.916 16 O -0.248 6.248 17 C -0.483 4.483 18 H 0.089 0.911 19 C -0.044 4.044 20 N -0.916 5.916 21 Si 1.147 2.853 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.261 1.261 25 H 0.253 0.747 26 H 0.162 0.838 27 H 0.180 0.820 28 H 0.196 0.804 29 H 0.409 0.591 30 H 0.149 0.851 31 H 0.155 0.845 32 H 0.148 0.852 33 H 0.121 0.879 34 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.913 8.794 -7.295 15.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.186 4.186 3 C -0.137 4.137 4 C -0.038 4.038 5 C -0.237 4.237 6 C -0.011 4.011 7 N -0.266 5.266 8 C 0.157 3.843 9 N -0.271 5.271 10 C -0.019 4.019 11 C -0.104 4.104 12 C -0.184 4.184 13 C -0.110 4.110 14 C -0.245 4.245 15 C 0.032 3.968 16 O -0.156 6.156 17 C -0.559 4.559 18 H 0.107 0.893 19 C -0.240 4.240 20 N -0.551 5.551 21 Si 0.963 3.037 22 H -0.190 1.190 23 H -0.199 1.199 24 H -0.185 1.185 25 H 0.269 0.731 26 H 0.179 0.821 27 H 0.197 0.803 28 H 0.213 0.787 29 H 0.246 0.754 30 H 0.166 0.834 31 H 0.173 0.827 32 H 0.166 0.834 33 H 0.139 0.861 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.985 7.647 -6.136 13.993 hybrid contribution -0.118 0.811 -1.228 1.477 sum 9.866 8.458 -7.364 14.937 Atomic orbital electron populations 1.25693 0.96608 0.99318 0.97057 1.20193 0.92498 1.02420 1.03478 1.16438 0.87812 1.13964 0.95447 1.21787 0.94810 0.91317 0.95855 1.22217 0.93983 1.06537 1.00967 1.23394 1.01566 0.89485 0.86691 1.67489 1.04928 1.21775 1.32430 1.18607 0.89220 0.91341 0.85112 1.41874 1.08846 1.71496 1.04895 1.17353 0.97405 1.00352 0.86754 1.21091 0.92647 0.98496 0.98150 1.21101 1.01875 1.02045 0.93348 1.21168 0.94034 0.95797 1.00038 1.21160 0.98861 1.06655 0.97786 1.19577 0.88584 0.92820 0.95771 1.83587 1.33485 1.59004 1.39550 1.22569 1.05360 1.33026 0.94988 0.89321 1.28294 0.91916 0.98571 1.05199 1.70701 1.40061 1.39772 1.04609 0.82539 0.76226 0.75006 0.69941 1.18957 1.19945 1.18488 0.73113 0.82058 0.80258 0.78703 0.75448 0.83361 0.82712 0.83381 0.86115 0.93321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.15 19.25 74.32 1.43 -3.72 16 2 C -0.19 -6.33 12.04 30.01 0.36 -5.96 16 3 C -0.13 -4.27 5.76 -21.15 -0.12 -4.39 16 4 C -0.01 -0.29 9.89 22.70 0.22 -0.06 16 5 C -0.22 -3.96 10.09 22.34 0.23 -3.73 16 6 C 0.15 3.27 11.16 84.67 0.95 4.22 16 7 N -0.55 -18.00 6.83 -192.34 -1.31 -19.31 16 8 C 0.39 14.69 7.24 133.47 0.97 15.65 16 9 N -0.65 -28.65 5.30 -184.36 -0.98 -29.63 16 10 C 0.08 3.52 6.39 38.30 0.24 3.77 16 11 C -0.08 -3.15 8.60 22.38 0.19 -2.96 16 12 C -0.16 -5.43 10.04 22.28 0.22 -5.21 16 13 C -0.09 -3.25 10.04 22.28 0.22 -3.03 16 14 C -0.22 -10.20 9.16 22.37 0.20 -9.99 16 15 C 0.08 4.31 6.66 22.70 0.15 4.46 16 16 O -0.25 -14.85 8.63 -22.93 -0.20 -15.05 16 17 C -0.48 -28.60 9.49 67.91 0.64 -27.96 16 18 H 0.09 4.93 5.21 -2.91 -0.02 4.91 16 19 C -0.04 -2.54 5.49 84.82 0.47 -2.07 16 20 N -0.92 -57.38 13.70 21.61 0.30 -57.08 16 21 Si 1.15 48.89 29.92 68.60 2.05 50.95 16 22 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 24 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 25 H 0.25 5.59 7.80 -4.42 -0.03 5.55 16 26 H 0.16 2.80 8.06 -2.91 -0.02 2.77 16 27 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 28 H 0.20 2.70 8.06 -2.91 -0.02 2.67 16 29 H 0.41 19.32 7.29 -92.71 -0.68 18.64 16 30 H 0.15 5.16 5.93 -2.91 -0.02 5.14 16 31 H 0.16 3.76 8.06 -2.91 -0.02 3.74 16 32 H 0.15 4.07 8.06 -2.91 -0.02 4.04 16 33 H 0.12 5.57 5.65 -2.91 -0.02 5.56 16 34 H 0.26 16.87 7.97 -92.71 -0.74 16.13 16 Total: -1.00 -76.89 307.14 6.75 -70.14 By element: Atomic # 1 Polarization: 40.47 SS G_CDS: 0.51 Total: 40.98 kcal Atomic # 6 Polarization: -47.37 SS G_CDS: 6.38 Total: -40.99 kcal Atomic # 7 Polarization: -104.04 SS G_CDS: -1.99 Total: -106.03 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.20 Total: -15.05 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 2.05 Total: 50.95 kcal Total: -76.89 6.75 -70.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212596413.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.361 kcal (2) G-P(sol) polarization free energy of solvation -76.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds