Wall clock time and date at job start Tue Mar 31 2020 01:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39616 * 119.65979 * 207.08072 * 3 2 1 5 5 C 1.38167 * 119.13948 * 179.97438 * 4 3 2 6 6 C 1.39489 * 118.46833 * 0.02562 * 5 4 3 7 7 N 1.39586 * 120.37825 * 179.97438 * 6 5 4 8 8 C 1.39767 * 120.00053 * 154.25219 * 7 6 5 9 9 C 1.38982 * 120.00687 * 328.85388 * 8 7 6 10 10 C 1.37988 * 119.99358 * 179.78974 * 9 8 7 11 11 C 1.38924 * 120.00526 * 0.46631 * 10 9 8 12 12 O 1.35778 * 119.99105 * 179.76476 * 11 10 9 13 13 C 1.34812 * 117.00170 * 186.86062 * 12 11 10 14 14 H 1.08006 * 119.99730 * 354.61221 * 13 12 11 15 15 C 1.38608 * 120.00477 * 174.61451 * 13 12 11 16 16 N 1.31590 * 119.99993 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00337 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46691 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47074 * 119.99691 * 17 15 13 20 20 H 1.48493 * 109.47253 * 239.99975 * 17 15 13 21 21 C 1.38917 * 120.01493 * 359.78459 * 11 10 9 22 22 C 1.37989 * 120.00630 * 359.97438 * 21 11 10 23 23 C 1.39040 * 119.24399 * 359.97438 * 6 5 4 24 24 N 1.31636 * 120.80313 * 359.97438 * 23 6 5 25 25 H 4.51302 * 14.15269 * 359.97438 * 4 2 1 26 26 H 1.08006 * 120.42459 * 0.25897 * 4 3 2 27 27 H 1.08002 * 120.76235 * 180.02562 * 5 4 3 28 28 H 0.97001 * 119.99938 * 334.24966 * 7 6 5 29 29 H 1.08005 * 120.00175 * 0.02562 * 9 8 7 30 30 H 1.07997 * 120.00052 * 180.25258 * 10 9 8 31 31 H 0.96997 * 119.99833 * 180.02562 * 16 15 13 32 32 H 1.07999 * 119.99549 * 179.97438 * 21 11 10 33 33 H 1.08001 * 120.00260 * 179.97438 * 22 21 11 34 34 H 1.08006 * 119.60355 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.2963 1.0812 0.5523 5 6 4.6780 1.0704 0.5471 6 6 5.3322 -0.0264 -0.0139 7 7 6.7268 -0.0785 -0.0408 8 6 7.3794 -1.3138 -0.0821 9 6 6.8047 -2.4241 0.5251 10 6 7.4470 -3.6445 0.4805 11 6 8.6728 -3.7613 -0.1629 12 8 9.3069 -4.9612 -0.2025 13 6 10.5536 -4.9781 -0.7152 14 1 10.9705 -4.0819 -1.1506 15 6 11.3003 -6.1454 -0.6837 16 7 10.7921 -7.2374 -0.1538 17 14 13.0281 -6.1685 -1.3936 18 1 13.3628 -4.8229 -1.9251 19 1 13.9960 -6.5343 -0.3284 20 1 13.0990 -7.1664 -2.4910 21 6 9.2500 -2.6506 -0.7653 22 6 8.6057 -1.4310 -0.7254 23 6 4.5793 -1.0673 -0.5459 24 7 3.2637 -1.0271 -0.5245 25 1 -1.0500 -0.0006 -0.0009 26 1 2.7573 1.9125 0.9822 27 1 5.2384 1.8922 0.9677 28 1 7.2431 0.7426 -0.0310 29 1 5.8535 -2.3325 1.0285 30 1 6.9986 -4.5082 0.9487 31 1 11.3148 -8.0542 -0.1314 32 1 10.2031 -2.7417 -1.2650 33 1 9.0547 -0.5674 -1.1934 34 1 5.0799 -1.9192 -0.9821 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212607996.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:46 Heat of formation + Delta-G solvation = 100.383550 kcal Electronic energy + Delta-G solvation = -19494.058869 eV Core-core repulsion = 16359.531921 eV Total energy + Delta-G solvation = -3134.526949 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.51632 -39.11904 -37.37881 -35.10064 -33.33076 -32.43440 -32.07459 -30.55027 -29.51390 -27.51015 -25.37679 -24.06467 -23.33138 -22.02451 -21.01686 -19.42483 -18.17879 -17.55417 -17.35582 -16.48852 -16.09712 -15.66320 -14.63128 -14.48697 -14.33943 -14.19371 -13.74968 -13.53830 -13.30430 -12.93312 -12.89350 -12.50047 -12.30300 -11.70327 -11.50085 -11.38587 -11.09716 -10.88743 -10.78946 -10.48696 -10.32202 -9.75315 -9.52703 -9.42742 -8.90380 -8.38600 -8.10346 -6.72654 -6.50163 -4.07888 0.77481 1.20604 2.01541 2.19810 2.59914 2.90775 3.09045 3.10401 3.15926 3.34862 3.91847 3.99407 4.02280 4.44266 4.68356 4.77699 5.00622 5.03204 5.06472 5.20508 5.43276 5.51952 5.54564 5.58794 5.96974 6.03453 6.04163 6.05210 6.30774 6.50274 6.66035 6.76182 6.90442 7.13325 7.21666 7.39222 7.40321 7.60308 7.80630 7.93640 7.97677 8.95032 9.64013 10.67542 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.040139 B = 0.003048 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.405711 B = 9183.433417 C = 9677.549951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.124 4.124 3 C 0.152 3.848 4 C -0.100 4.100 5 C -0.150 4.150 6 C 0.168 3.832 7 N -0.666 5.666 8 C 0.055 3.945 9 C -0.105 4.105 10 C -0.163 4.163 11 C 0.140 3.860 12 O -0.175 6.175 13 C -0.391 4.391 14 H 0.093 0.907 15 C 0.039 3.961 16 N -0.860 5.860 17 Si 0.941 3.059 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.275 1.275 21 C -0.209 4.209 22 C -0.098 4.098 23 C 0.055 3.945 24 N -0.432 5.432 25 H 0.225 0.775 26 H 0.136 0.864 27 H 0.138 0.862 28 H 0.405 0.595 29 H 0.116 0.884 30 H 0.123 0.877 31 H 0.270 0.730 32 H 0.132 0.868 33 H 0.111 0.889 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.377 15.991 0.777 19.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.125 4.125 3 C 0.016 3.984 4 C -0.121 4.121 5 C -0.179 4.179 6 C 0.063 3.937 7 N -0.288 5.288 8 C -0.039 4.039 9 C -0.125 4.125 10 C -0.183 4.183 11 C 0.086 3.914 12 O -0.079 6.079 13 C -0.467 4.467 14 H 0.110 0.890 15 C -0.166 4.166 16 N -0.495 5.495 17 Si 0.766 3.234 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.229 4.229 22 C -0.118 4.118 23 C -0.110 4.110 24 N -0.140 5.140 25 H 0.242 0.758 26 H 0.154 0.846 27 H 0.155 0.845 28 H 0.241 0.759 29 H 0.134 0.866 30 H 0.141 0.859 31 H 0.080 0.920 32 H 0.150 0.850 33 H 0.129 0.871 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -10.761 14.674 0.530 18.204 hybrid contribution 1.477 1.070 0.006 1.824 sum -9.284 15.743 0.536 18.285 Atomic orbital electron populations 1.24787 0.95566 0.99252 0.99790 1.19381 0.91068 1.01050 1.01000 1.16315 0.87884 0.92109 1.02113 1.21738 0.93776 0.98221 0.98317 1.21079 0.94155 0.99964 1.02709 1.18980 0.84974 0.95808 0.93961 1.41821 1.01728 1.06929 1.78285 1.17239 0.95590 0.85459 1.05597 1.20501 1.00086 0.91920 1.00018 1.20084 0.95571 0.97540 1.05137 1.19368 0.92300 0.86263 0.93512 1.83986 1.28464 1.24109 1.71313 1.21358 0.88317 0.98598 1.38475 0.88998 1.25299 0.99844 0.94429 0.96988 1.70058 1.37383 1.00775 1.41274 0.85642 0.80318 0.78821 0.78612 1.19105 1.20121 1.20099 1.21018 1.02800 0.92320 1.06737 1.20448 0.94888 0.97388 0.99121 1.22743 0.88312 0.99919 0.99989 1.67625 1.09171 1.24027 1.13149 0.75798 0.84643 0.84452 0.75905 0.86638 0.85917 0.91983 0.85027 0.87058 0.81592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 19.25 29.55 0.57 -1.15 16 2 C -0.12 -1.59 13.44 -38.84 -0.52 -2.11 16 3 C 0.15 2.09 6.59 -85.00 -0.56 1.53 16 4 C -0.10 -1.10 9.78 -39.09 -0.38 -1.48 16 5 C -0.15 -1.59 10.07 -39.14 -0.39 -1.98 16 6 C 0.17 2.16 6.07 -83.56 -0.51 1.65 16 7 N -0.67 -8.37 5.47 -8.24 -0.05 -8.42 16 8 C 0.06 0.87 5.94 -83.69 -0.50 0.37 16 9 C -0.10 -1.80 7.74 -39.40 -0.30 -2.11 16 10 C -0.16 -3.29 9.98 -39.42 -0.39 -3.69 16 11 C 0.14 3.20 6.65 -39.08 -0.26 2.94 16 12 O -0.18 -4.84 9.75 0.02 0.00 -4.83 16 13 C -0.39 -10.57 9.48 30.87 0.29 -10.28 16 14 H 0.09 2.28 5.21 -52.48 -0.27 2.00 16 15 C 0.04 1.04 5.49 -17.52 -0.10 0.95 16 16 N -0.86 -24.77 13.67 55.48 0.76 -24.01 16 17 Si 0.94 20.00 29.55 -169.99 -5.02 14.98 16 18 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 19 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 21 C -0.21 -4.22 9.16 -39.42 -0.36 -4.58 16 22 C -0.10 -1.63 9.95 -39.40 -0.39 -2.02 16 23 C 0.06 0.82 9.01 -17.34 -0.16 0.66 16 24 N -0.43 -6.74 10.27 -10.96 -0.11 -6.85 16 25 H 0.23 1.21 7.80 -54.09 -0.42 0.79 16 26 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 27 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 28 H 0.41 4.02 8.90 -40.82 -0.36 3.65 16 29 H 0.12 1.85 6.53 -52.48 -0.34 1.50 16 30 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 31 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.13 2.66 5.65 -52.49 -0.30 2.36 16 33 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.17 2.57 6.32 -52.48 -0.33 2.24 16 LS Contribution 309.60 15.07 4.67 4.67 Total: -1.00 -31.15 309.60 -6.58 -37.72 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -2.86 Total: 8.04 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -3.97 Total: -21.29 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.60 Total: -39.28 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: 0.00 Total: -4.83 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.15 -6.58 -37.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212607996.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.106 kcal (2) G-P(sol) polarization free energy of solvation -31.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds