Wall clock time and date at job start Tue Mar 31 2020 01:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39616 * 119.65979 * 207.08072 * 3 2 1 5 5 C 1.38167 * 119.13948 * 179.97438 * 4 3 2 6 6 C 1.39489 * 118.46833 * 0.02562 * 5 4 3 7 7 N 1.39586 * 120.37825 * 179.97438 * 6 5 4 8 8 C 1.39767 * 120.00053 * 154.25219 * 7 6 5 9 9 C 1.38982 * 120.00687 * 328.85388 * 8 7 6 10 10 C 1.37988 * 119.99358 * 179.78974 * 9 8 7 11 11 C 1.38924 * 120.00526 * 0.46631 * 10 9 8 12 12 O 1.35778 * 119.99105 * 179.76476 * 11 10 9 13 13 C 1.34812 * 117.00170 * 186.86062 * 12 11 10 14 14 H 1.08006 * 119.99730 * 354.61221 * 13 12 11 15 15 C 1.38608 * 120.00477 * 174.61451 * 13 12 11 16 16 N 1.31590 * 119.99993 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00337 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46691 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47074 * 119.99691 * 17 15 13 20 20 H 1.48493 * 109.47253 * 239.99975 * 17 15 13 21 21 C 1.38917 * 120.01493 * 359.78459 * 11 10 9 22 22 C 1.37989 * 120.00630 * 359.97438 * 21 11 10 23 23 C 1.39040 * 119.24399 * 359.97438 * 6 5 4 24 24 N 1.31636 * 120.80313 * 359.97438 * 23 6 5 25 25 H 4.51302 * 14.15269 * 359.97438 * 4 2 1 26 26 H 1.08006 * 120.42459 * 0.25897 * 4 3 2 27 27 H 1.08002 * 120.76235 * 180.02562 * 5 4 3 28 28 H 0.97001 * 119.99938 * 334.24966 * 7 6 5 29 29 H 1.08005 * 120.00175 * 0.02562 * 9 8 7 30 30 H 1.07997 * 120.00052 * 180.25258 * 10 9 8 31 31 H 0.96997 * 119.99833 * 180.02562 * 16 15 13 32 32 H 1.07999 * 119.99549 * 179.97438 * 21 11 10 33 33 H 1.08001 * 120.00260 * 179.97438 * 22 21 11 34 34 H 1.08006 * 119.60355 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.2963 1.0812 0.5523 5 6 4.6780 1.0704 0.5471 6 6 5.3322 -0.0264 -0.0139 7 7 6.7268 -0.0785 -0.0408 8 6 7.3794 -1.3138 -0.0821 9 6 6.8047 -2.4241 0.5251 10 6 7.4470 -3.6445 0.4805 11 6 8.6728 -3.7613 -0.1629 12 8 9.3069 -4.9612 -0.2025 13 6 10.5536 -4.9781 -0.7152 14 1 10.9705 -4.0819 -1.1506 15 6 11.3003 -6.1454 -0.6837 16 7 10.7921 -7.2374 -0.1538 17 14 13.0281 -6.1685 -1.3936 18 1 13.3628 -4.8229 -1.9251 19 1 13.9960 -6.5343 -0.3284 20 1 13.0990 -7.1664 -2.4910 21 6 9.2500 -2.6506 -0.7653 22 6 8.6057 -1.4310 -0.7254 23 6 4.5793 -1.0673 -0.5459 24 7 3.2637 -1.0271 -0.5245 25 1 -1.0500 -0.0006 -0.0009 26 1 2.7573 1.9125 0.9822 27 1 5.2384 1.8922 0.9677 28 1 7.2431 0.7426 -0.0310 29 1 5.8535 -2.3325 1.0285 30 1 6.9986 -4.5082 0.9487 31 1 11.3148 -8.0542 -0.1314 32 1 10.2031 -2.7417 -1.2650 33 1 9.0547 -0.5674 -1.1934 34 1 5.0799 -1.9192 -0.9821 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212607996.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:45 Heat of formation + Delta-G solvation = 80.493253 kcal Electronic energy + Delta-G solvation = -19494.921377 eV Core-core repulsion = 16359.531921 eV Total energy + Delta-G solvation = -3135.389457 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.61512 -40.64425 -38.87045 -36.41704 -34.35985 -34.10922 -33.20504 -32.02746 -30.68026 -28.91891 -27.21619 -25.13411 -24.44574 -23.49853 -22.47422 -20.29190 -19.91290 -19.06573 -18.49659 -17.95619 -17.09060 -16.70381 -16.29324 -16.04728 -15.64143 -15.48060 -15.17396 -14.90136 -14.54358 -14.29734 -14.15310 -13.78424 -13.67860 -13.39180 -12.97383 -12.80815 -12.43106 -12.40552 -12.08175 -11.74602 -11.51838 -11.17824 -10.84431 -10.65099 -10.48690 -9.88728 -9.42516 -8.44643 -8.09484 -6.10550 -0.21965 0.25766 0.48677 0.73266 1.37313 1.45148 1.55405 1.74701 1.98002 2.18866 2.25764 2.80558 3.06031 3.15869 3.18723 3.53207 3.74683 3.84153 4.01226 4.05978 4.11911 4.22067 4.46113 4.51344 4.63974 4.74394 4.87494 5.03108 5.06394 5.17598 5.18746 5.36082 5.40687 5.58966 5.66823 5.86586 6.04081 6.34864 6.58035 6.70292 6.97460 7.00461 7.82010 8.79136 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.040139 B = 0.003048 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.405711 B = 9183.433417 C = 9677.549951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.193 4.193 3 C 0.142 3.858 4 C -0.096 4.096 5 C -0.126 4.126 6 C 0.156 3.844 7 N -0.657 5.657 8 C 0.094 3.906 9 C -0.103 4.103 10 C -0.172 4.172 11 C 0.097 3.903 12 O -0.233 6.233 13 C -0.409 4.409 14 H 0.105 0.895 15 C -0.026 4.026 16 N -0.923 5.923 17 Si 1.019 2.981 18 H -0.248 1.248 19 H -0.271 1.271 20 H -0.271 1.271 21 C -0.209 4.209 22 C -0.094 4.094 23 C 0.036 3.964 24 N -0.470 5.470 25 H 0.267 0.733 26 H 0.169 0.831 27 H 0.178 0.822 28 H 0.424 0.576 29 H 0.129 0.871 30 H 0.114 0.886 31 H 0.271 0.729 32 H 0.128 0.872 33 H 0.153 0.847 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.568 20.533 0.784 23.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.193 4.193 3 C 0.006 3.994 4 C -0.116 4.116 5 C -0.154 4.154 6 C 0.052 3.948 7 N -0.281 5.281 8 C -0.001 4.001 9 C -0.124 4.124 10 C -0.192 4.192 11 C 0.047 3.953 12 O -0.140 6.140 13 C -0.485 4.485 14 H 0.123 0.877 15 C -0.223 4.223 16 N -0.562 5.562 17 Si 0.838 3.162 18 H -0.171 1.171 19 H -0.196 1.196 20 H -0.196 1.196 21 C -0.228 4.228 22 C -0.115 4.115 23 C -0.128 4.128 24 N -0.178 5.178 25 H 0.283 0.717 26 H 0.187 0.813 27 H 0.195 0.805 28 H 0.264 0.736 29 H 0.147 0.853 30 H 0.132 0.868 31 H 0.080 0.920 32 H 0.146 0.854 33 H 0.171 0.829 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.999 19.311 0.533 22.742 hybrid contribution 1.310 0.049 0.062 1.312 sum -10.689 19.360 0.595 22.123 Atomic orbital electron populations 1.25817 0.96324 0.96193 0.96469 1.19817 0.91789 1.03896 1.03846 1.16797 0.88871 0.92309 1.01464 1.22121 0.94082 0.98171 0.97255 1.21500 0.94134 0.99544 1.00266 1.18976 0.84683 0.96312 0.94825 1.41625 1.01797 1.06170 1.78520 1.17299 0.94629 0.86297 1.01918 1.20603 1.00410 0.91342 1.00063 1.20207 0.95161 0.98672 1.05144 1.19834 0.93402 0.86359 0.95739 1.83952 1.29321 1.26633 1.74130 1.21869 0.88764 0.99370 1.38474 0.87726 1.26589 1.04501 0.93773 0.97448 1.70213 1.39601 1.01743 1.44629 0.84525 0.74267 0.79608 0.77792 1.17123 1.19570 1.19635 1.21129 1.02781 0.92864 1.06076 1.20751 0.94880 0.97247 0.98600 1.22549 0.88597 1.00378 1.01240 1.67548 1.09691 1.25794 1.14804 0.71737 0.81332 0.80495 0.73625 0.85311 0.86810 0.91968 0.85394 0.82948 0.83545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 19.25 74.32 1.43 -0.69 16 2 C -0.19 -4.53 13.44 30.02 0.40 -4.13 16 3 C 0.14 3.68 6.59 40.57 0.27 3.94 16 4 C -0.10 -1.76 9.78 22.59 0.22 -1.54 16 5 C -0.13 -2.10 10.07 22.55 0.23 -1.88 16 6 C 0.16 3.54 6.07 38.40 0.23 3.78 16 7 N -0.66 -14.07 5.47 -179.98 -0.98 -15.06 16 8 C 0.09 2.78 5.94 38.23 0.23 3.00 16 9 C -0.10 -3.53 7.74 22.39 0.17 -3.36 16 10 C -0.17 -7.28 9.98 22.37 0.22 -7.06 16 11 C 0.10 4.69 6.65 22.60 0.15 4.84 16 12 O -0.23 -13.84 9.75 -22.86 -0.22 -14.07 16 13 C -0.41 -23.30 9.48 67.91 0.64 -22.66 16 14 H 0.11 5.38 5.21 -2.91 -0.02 5.36 16 15 C -0.03 -1.47 5.49 84.82 0.47 -1.00 16 16 N -0.92 -56.67 13.67 21.61 0.30 -56.38 16 17 Si 1.02 42.30 29.55 68.60 2.03 44.33 16 18 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 19 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 20 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 21 C -0.21 -8.48 9.16 22.37 0.20 -8.28 16 22 C -0.09 -2.92 9.95 22.39 0.22 -2.70 16 23 C 0.04 1.03 9.01 84.91 0.77 1.79 16 24 N -0.47 -14.51 10.27 -188.58 -1.94 -16.45 16 25 H 0.27 1.56 7.80 -4.42 -0.03 1.53 16 26 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 27 H 0.18 1.59 8.06 -2.91 -0.02 1.56 16 28 H 0.42 6.24 8.90 -92.71 -0.82 5.42 16 29 H 0.13 4.06 6.53 -2.91 -0.02 4.04 16 30 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 31 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 32 H 0.13 5.23 5.65 -2.91 -0.02 5.21 16 33 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 34 H 0.15 4.63 6.32 -2.91 -0.02 4.61 16 Total: -1.00 -75.43 309.60 5.37 -70.07 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.33 Total: 23.48 kcal Atomic # 6 Polarization: -41.79 SS G_CDS: 5.86 Total: -35.93 kcal Atomic # 7 Polarization: -85.26 SS G_CDS: -2.63 Total: -87.88 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.22 Total: -14.07 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -75.43 5.37 -70.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212607996.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.559 kcal (2) G-P(sol) polarization free energy of solvation -75.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds