Wall clock time and date at job start Tue Mar 31 2020 01:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38528 * 119.78666 * 2 1 4 4 C 1.38024 * 120.44648 * 180.02562 * 3 2 1 5 5 C 1.39256 * 120.02238 * 359.97438 * 4 3 2 6 6 C 1.48085 * 120.20915 * 179.97438 * 5 4 3 7 7 C 1.39503 * 119.65830 * 359.97438 * 6 5 4 8 8 C 1.38207 * 119.14490 * 179.72089 * 7 6 5 9 9 C 1.39441 * 118.45232 * 0.53750 * 8 7 6 10 10 O 1.35687 * 120.38178 * 179.75824 * 9 8 7 11 11 C 1.34802 * 116.99886 * 5.18193 * 10 9 8 12 12 H 1.08000 * 120.00035 * 354.92534 * 11 10 9 13 13 C 1.38669 * 119.99918 * 174.92834 * 11 10 9 14 14 N 1.31543 * 120.00030 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99912 * 179.72635 * 13 11 10 16 16 H 1.48504 * 109.47280 * 180.27180 * 15 13 11 17 17 H 1.48497 * 109.47112 * 300.26940 * 15 13 11 18 18 H 1.48501 * 109.47447 * 60.27104 * 15 13 11 19 19 C 1.39035 * 119.23672 * 359.47888 * 9 8 7 20 20 N 1.31605 * 120.79023 * 0.25579 * 19 9 8 21 21 C 1.40721 * 119.58029 * 0.25439 * 5 4 3 22 22 C 1.43197 * 120.22164 * 179.72297 * 21 5 4 23 23 N 4.80201 * 134.51308 * 180.29667 * 2 1 3 24 24 C 1.37942 * 119.79585 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.46839 * 90.00381 * 1 2 3 26 26 H 1.09006 * 109.46979 * 209.99761 * 1 2 3 27 27 H 1.08997 * 109.47635 * 329.99696 * 1 2 3 28 28 H 1.07998 * 119.77979 * 359.97438 * 3 2 1 29 29 H 1.07999 * 119.99215 * 179.97438 * 4 3 2 30 30 H 1.08000 * 120.43414 * 359.97438 * 7 6 5 31 31 H 1.07992 * 120.77550 * 180.26820 * 8 7 6 32 32 H 0.97000 * 119.99975 * 359.72580 * 14 13 11 33 33 H 1.07997 * 119.60102 * 180.27780 * 19 9 8 34 34 H 1.08001 * 120.00881 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1951 1.2023 0.0000 4 6 3.5753 1.2182 -0.0005 5 6 4.2859 0.0205 -0.0005 6 6 5.7667 0.0328 -0.0017 7 6 6.4469 1.2507 -0.0033 8 6 7.8290 1.2497 0.0015 9 6 8.4925 0.0233 -0.0036 10 8 9.8485 -0.0233 -0.0041 11 6 10.5013 1.1507 0.1090 12 1 9.9478 2.0781 0.1122 13 6 11.8833 1.1676 0.2213 14 7 12.5573 0.0380 0.2179 15 14 12.7884 2.7949 0.3704 16 1 14.2484 2.5420 0.4696 17 1 12.5106 3.6274 -0.8275 18 1 12.3259 3.5090 1.5875 19 6 7.7485 -1.1513 -0.0024 20 7 6.4330 -1.1155 -0.0014 21 6 3.5878 -1.2013 -0.0054 22 6 4.3047 -2.4409 -0.0115 23 7 4.8735 -3.4242 -0.0177 24 6 2.1924 -1.1971 0.0005 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6481 2.1334 -0.0004 29 1 4.1043 2.1597 -0.0009 30 1 5.9007 2.1824 -0.0041 31 1 8.3822 2.1772 0.0048 32 1 12.0873 -0.8070 0.1408 33 1 8.2564 -2.1044 -0.0018 34 1 1.6492 -2.1305 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242591715.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:45 Heat of formation + Delta-G solvation = 33.648145 kcal Electronic energy + Delta-G solvation = -19815.418194 eV Core-core repulsion = 16677.997381 eV Total energy + Delta-G solvation = -3137.420813 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.68008 -40.43895 -39.02958 -37.28822 -34.74708 -34.15392 -33.26282 -32.13889 -30.92498 -27.89717 -26.79251 -25.32762 -24.33409 -23.65897 -22.26327 -20.53310 -19.49447 -18.60772 -17.89057 -17.62613 -16.33263 -16.14381 -15.97868 -15.78117 -15.53006 -15.21750 -14.99070 -14.75747 -14.48121 -14.22355 -14.10062 -13.97090 -13.64994 -13.31415 -12.85586 -12.71213 -12.59878 -12.50982 -12.28595 -12.05833 -11.95520 -11.83179 -10.97167 -10.73594 -10.49465 -10.13765 -9.87349 -9.05669 -8.87057 -6.35400 -0.49800 0.12045 0.23222 0.80108 1.48902 1.61274 1.78205 1.92450 2.11788 2.28644 2.66849 2.90262 2.97658 3.11676 3.17048 3.31409 3.57558 3.85885 4.02376 4.05122 4.09792 4.30243 4.44096 4.45386 4.62594 4.68911 4.86112 4.94748 5.02237 5.06335 5.12147 5.30001 5.34028 5.40126 5.50902 5.62013 5.62925 5.96273 6.06323 6.70532 6.73809 6.91156 7.41544 8.38307 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.032302 B = 0.003685 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.615104 B = 7596.339476 C = 8442.950527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.084 4.084 3 C -0.078 4.078 4 C -0.104 4.104 5 C -0.001 4.001 6 C 0.046 3.954 7 C -0.082 4.082 8 C -0.192 4.192 9 C 0.085 3.915 10 O -0.232 6.232 11 C -0.491 4.491 12 H 0.104 0.896 13 C -0.039 4.039 14 N -0.909 5.909 15 Si 1.146 2.854 16 H -0.277 1.277 17 H -0.255 1.255 18 H -0.255 1.255 19 C 0.020 3.980 20 N -0.448 5.448 21 C -0.031 4.031 22 C 0.281 3.719 23 N -0.469 5.469 24 C -0.073 4.073 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.171 0.829 29 H 0.159 0.841 30 H 0.182 0.818 31 H 0.150 0.850 32 H 0.262 0.738 33 H 0.136 0.864 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.941 9.695 -0.214 26.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.084 4.084 3 C -0.096 4.096 4 C -0.123 4.123 5 C -0.004 4.004 6 C -0.090 4.090 7 C -0.101 4.101 8 C -0.218 4.218 9 C 0.031 3.969 10 O -0.136 6.136 11 C -0.566 4.566 12 H 0.121 0.879 13 C -0.237 4.237 14 N -0.542 5.542 15 Si 0.961 3.039 16 H -0.202 1.202 17 H -0.179 1.179 18 H -0.180 1.180 19 C -0.141 4.141 20 N -0.157 5.157 21 C -0.035 4.035 22 C -0.033 4.033 23 N -0.146 5.146 24 C -0.093 4.093 25 H 0.102 0.898 26 H 0.092 0.908 27 H 0.106 0.894 28 H 0.188 0.812 29 H 0.177 0.823 30 H 0.199 0.801 31 H 0.168 0.832 32 H 0.070 0.930 33 H 0.154 0.846 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -22.801 7.851 -0.092 24.115 hybrid contribution -0.300 -0.568 -0.197 0.672 sum -23.101 7.283 -0.288 24.223 Atomic orbital electron populations 1.20887 0.88043 1.04343 1.03658 1.20243 0.98059 0.91796 0.98318 1.21579 0.92887 0.99315 0.95819 1.21423 0.94972 0.96427 0.99496 1.18558 0.88533 0.93513 0.99814 1.19927 0.93837 0.88891 1.06368 1.22192 0.92721 0.99608 0.95554 1.21769 0.95635 0.97727 1.06651 1.20787 0.84524 0.96084 0.95511 1.83648 1.14617 1.35293 1.80085 1.22758 0.93137 0.84050 1.56700 0.87869 1.28556 0.93132 1.08674 0.93309 1.70706 1.39412 0.99126 1.44942 0.82589 0.74881 0.67384 0.79065 1.20198 1.17912 1.17979 1.21598 0.88934 0.96051 1.07532 1.67396 1.07647 1.30365 1.10245 1.16221 0.93065 0.85613 1.08631 1.25770 0.91830 0.92631 0.93117 1.81042 1.08837 1.15198 1.09496 1.21193 0.89977 1.00318 0.97849 0.89780 0.90793 0.89383 0.81181 0.82338 0.80056 0.83234 0.92959 0.84612 0.83619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.00 71.23 0.71 0.06 16 2 C -0.08 -1.03 5.88 -19.87 -0.12 -1.15 16 3 C -0.08 -0.87 9.67 22.29 0.22 -0.65 16 4 C -0.10 -1.75 9.41 22.46 0.21 -1.54 16 5 C 0.00 -0.02 5.91 -19.81 -0.12 -0.14 16 6 C 0.05 1.61 6.70 41.92 0.28 1.89 16 7 C -0.08 -2.59 9.45 22.57 0.21 -2.38 16 8 C -0.19 -7.73 9.25 22.55 0.21 -7.52 16 9 C 0.09 4.18 6.67 22.75 0.15 4.33 16 10 O -0.23 -13.40 9.16 -21.76 -0.20 -13.60 16 11 C -0.49 -27.25 9.50 67.92 0.64 -26.60 16 12 H 0.10 5.11 5.25 -2.91 -0.02 5.09 16 13 C -0.04 -2.15 5.49 84.84 0.47 -1.69 16 14 N -0.91 -55.67 13.70 21.62 0.30 -55.37 16 15 Si 1.15 45.29 29.92 68.60 2.05 47.34 16 16 H -0.28 -11.08 7.11 99.48 0.71 -10.38 16 17 H -0.25 -8.97 7.11 99.48 0.71 -8.26 16 18 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 19 C 0.02 0.94 11.14 84.92 0.95 1.89 16 20 N -0.45 -19.18 7.12 -184.39 -1.31 -20.49 16 21 C -0.03 -0.84 5.76 -21.11 -0.12 -0.96 16 22 C 0.28 9.90 12.59 88.33 1.11 11.01 16 23 N -0.47 -19.09 18.21 19.00 0.35 -18.75 16 24 C -0.07 -1.32 9.39 22.52 0.21 -1.11 16 25 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 26 H 0.07 0.39 8.08 -2.38 -0.02 0.37 16 27 H 0.09 0.24 8.08 -2.39 -0.02 0.22 16 28 H 0.17 0.62 8.06 -2.91 -0.02 0.60 16 29 H 0.16 1.83 6.17 -2.91 -0.02 1.82 16 30 H 0.18 3.68 6.18 -2.91 -0.02 3.67 16 31 H 0.15 5.73 5.75 -2.91 -0.02 5.71 16 32 H 0.26 16.83 7.97 -92.71 -0.74 16.09 16 33 H 0.14 6.56 8.06 -2.91 -0.02 6.54 16 34 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -77.22 306.04 7.39 -69.83 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 1.19 Total: 15.60 kcal Atomic # 6 Polarization: -29.58 SS G_CDS: 5.02 Total: -24.56 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -0.67 Total: -94.61 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.20 Total: -13.60 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.05 Total: 47.34 kcal Total: -77.22 7.39 -69.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242591715.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.481 kcal (2) G-P(sol) polarization free energy of solvation -77.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds