Wall clock time and date at job start Tue Mar 31 2020 01:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38874 * 119.24148 * 2 1 4 4 C 1.36882 * 119.80065 * 179.73850 * 3 2 1 5 5 C 1.41119 * 118.39940 * 0.51987 * 4 3 2 6 6 C 1.40875 * 120.72354 * 179.72287 * 5 4 3 7 7 H 1.07999 * 120.00076 * 150.56622 * 6 5 4 8 8 C 1.40060 * 119.99950 * 330.57184 * 6 5 4 9 9 N 1.30783 * 119.99855 * 163.10192 * 8 6 5 10 10 Si 1.86794 * 119.99873 * 343.10056 * 8 6 5 11 11 H 1.48500 * 109.47278 * 90.34093 * 10 8 6 12 12 H 1.48497 * 109.47284 * 210.34479 * 10 8 6 13 13 H 1.48500 * 109.47324 * 330.34456 * 10 8 6 14 14 C 1.41886 * 118.56244 * 359.74880 * 5 4 3 15 15 C 1.47771 * 119.99982 * 180.02562 * 14 5 4 16 16 C 1.40105 * 119.95689 * 316.45147 * 15 14 5 17 17 C 1.36524 * 120.46921 * 179.97438 * 16 15 14 18 18 C 1.38916 * 120.20247 * 359.97438 * 17 16 15 19 19 O 1.35091 * 133.77362 * 180.02562 * 18 17 16 20 20 C 1.34237 * 108.20640 * 179.97438 * 19 18 17 21 21 N 1.29878 * 110.33149 * 0.02562 * 20 19 18 22 22 C 1.36117 * 108.78245 * 359.97438 * 21 20 19 23 23 C 1.39248 * 119.96167 * 136.17913 * 15 14 5 24 24 N 1.31736 * 119.25043 * 180.26567 * 2 1 3 25 25 H 1.09001 * 109.46993 * 269.72686 * 1 2 3 26 26 H 1.08995 * 109.46612 * 149.73116 * 1 2 3 27 27 H 1.08991 * 109.47102 * 29.73158 * 1 2 3 28 28 H 1.08001 * 120.10012 * 0.02562 * 3 2 1 29 29 H 1.08005 * 120.80626 * 180.24603 * 4 3 2 30 30 H 0.97001 * 119.99738 * 180.02562 * 9 8 6 31 31 H 1.08004 * 119.76463 * 359.96007 * 16 15 14 32 32 H 1.07999 * 119.90512 * 180.02562 * 17 16 15 33 33 H 1.08000 * 124.83110 * 179.97438 * 20 19 18 34 34 H 1.08005 * 120.27302 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2118 0.0000 4 6 3.5542 1.2251 0.0054 5 6 4.2375 -0.0096 -0.0004 6 6 5.6455 -0.0529 -0.0010 7 1 6.1604 -0.8858 0.4547 8 6 6.3778 0.9842 -0.5926 9 7 7.6484 1.1269 -0.3176 10 14 5.5396 2.1633 -1.7742 11 1 4.9984 3.3209 -1.0178 12 1 6.5247 2.6436 -2.7763 13 1 4.4292 1.4628 -2.4681 14 6 3.4756 -1.2065 -0.0061 15 6 4.1584 -2.5170 -0.0116 16 6 5.2623 -2.7271 -0.8484 17 6 5.9013 -3.9335 -0.8616 18 6 5.4619 -4.9661 -0.0428 19 8 5.8744 -6.2359 0.1629 20 6 5.0711 -6.7942 1.0820 21 7 4.1695 -5.9436 1.4698 22 6 4.3565 -4.7720 0.8025 23 6 3.7075 -3.5397 0.8189 24 7 2.1507 -1.1494 -0.0053 25 1 -0.3633 -0.0049 1.0277 26 1 -0.3632 -0.8875 -0.5180 27 1 -0.3633 0.8923 -0.5096 28 1 1.6347 2.1408 0.0004 29 1 4.0982 2.1581 0.0095 30 1 8.1555 1.8454 -0.7270 31 1 5.6101 -1.9291 -1.4878 32 1 6.7516 -4.0854 -1.5099 33 1 5.1612 -7.8068 1.4465 34 1 2.8598 -3.3795 1.4687 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242596384.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:50 Heat of formation + Delta-G solvation = 59.694906 kcal Electronic energy + Delta-G solvation = -20693.510316 eV Core-core repulsion = 17557.218975 eV Total energy + Delta-G solvation = -3136.291341 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.79779 -39.16473 -37.24126 -34.49455 -34.23035 -32.22245 -31.70222 -29.70951 -29.11347 -27.98181 -24.75523 -23.44402 -22.63478 -21.67517 -21.18797 -20.54720 -17.68911 -17.45703 -17.00024 -16.28295 -15.99942 -15.75695 -14.79448 -14.11511 -13.86428 -13.69949 -13.61286 -13.27091 -13.19951 -12.61574 -12.24791 -11.98072 -11.89659 -11.62608 -11.58005 -11.29979 -11.10711 -11.08999 -10.83807 -10.41300 -10.10132 -10.03500 -9.63067 -8.78710 -8.39013 -8.21476 -8.05267 -7.51804 -7.23926 -4.72947 1.21562 1.50019 2.31272 2.55269 2.85980 2.90613 2.95200 3.02022 3.10820 3.72264 4.15921 4.23522 4.34344 4.98036 5.09925 5.19168 5.49497 5.59587 5.74547 5.84722 5.87420 5.89189 6.04009 6.16513 6.23670 6.29703 6.38717 6.50564 6.59091 6.64684 6.72790 6.78505 6.99567 7.05911 7.15729 7.31294 7.46189 7.64980 7.93579 8.02474 8.25237 8.43323 9.26570 9.74746 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.016290 B = 0.006611 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.441936 B = 4234.360776 C = 5676.935642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.013 4.013 3 C -0.112 4.112 4 C -0.206 4.206 5 C 0.061 3.939 6 C -0.423 4.423 7 H 0.104 0.896 8 C 0.083 3.917 9 N -0.785 5.785 10 Si 0.910 3.090 11 H -0.265 1.265 12 H -0.286 1.286 13 H -0.245 1.245 14 C 0.034 3.966 15 C 0.020 3.980 16 C -0.052 4.052 17 C -0.107 4.107 18 C -0.001 4.001 19 O -0.223 6.223 20 C 0.205 3.795 21 N -0.481 5.481 22 C 0.011 3.989 23 C -0.053 4.053 24 N -0.436 5.436 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.291 0.709 31 H 0.152 0.848 32 H 0.130 0.870 33 H 0.248 0.752 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.571 -5.406 -1.557 6.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.153 4.153 3 C -0.132 4.132 4 C -0.231 4.231 5 C 0.056 3.944 6 C -0.451 4.451 7 H 0.122 0.878 8 C -0.140 4.140 9 N -0.407 5.407 10 Si 0.736 3.264 11 H -0.191 1.191 12 H -0.213 1.213 13 H -0.168 1.168 14 C -0.106 4.106 15 C 0.017 3.983 16 C -0.070 4.070 17 C -0.126 4.126 18 C -0.051 4.051 19 O -0.115 6.115 20 C -0.027 4.027 21 N -0.211 5.211 22 C -0.100 4.100 23 C -0.073 4.073 24 N -0.144 5.144 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.123 0.877 29 H 0.132 0.868 30 H 0.102 0.898 31 H 0.170 0.830 32 H 0.148 0.852 33 H 0.264 0.736 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.233 -6.153 -1.133 7.043 hybrid contribution 0.908 1.457 -0.725 1.864 sum -2.325 -4.697 -1.859 5.560 Atomic orbital electron populations 1.20299 0.90990 1.01193 1.00796 1.20280 0.95155 0.88163 1.11734 1.21202 0.94788 0.97683 0.99519 1.21222 0.94106 0.97643 1.10159 1.18392 0.94372 0.90996 0.90629 1.19556 0.89498 1.06105 1.29910 0.87828 1.26258 0.94812 0.96646 0.96238 1.69649 1.08839 1.28204 1.33985 0.86356 0.79758 0.80356 0.79902 1.19145 1.21271 1.16834 1.19219 0.88202 0.90685 1.12534 1.18204 0.94082 0.91571 0.94410 1.21142 0.93436 0.95240 0.97207 1.19466 1.02443 0.90135 1.00520 1.20433 0.98007 0.84273 1.02396 1.84441 1.51399 1.23724 1.51894 1.28001 0.86292 1.00113 0.88284 1.70533 1.24200 1.00850 1.25487 1.19676 0.97844 0.94238 0.98241 1.20387 0.99230 0.88712 0.98953 1.66887 1.09429 1.29384 1.08665 0.92863 0.92274 0.92741 0.87656 0.86814 0.89818 0.83003 0.85222 0.73605 0.85067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 10.15 36.01 0.37 -0.87 16 2 C -0.01 -0.28 6.79 -82.40 -0.56 -0.84 16 3 C -0.11 -2.31 9.64 -39.84 -0.38 -2.69 16 4 C -0.21 -4.64 7.31 -38.98 -0.29 -4.93 16 5 C 0.06 1.46 5.12 -106.41 -0.54 0.91 16 6 C -0.42 -10.24 7.18 -37.90 -0.27 -10.51 16 7 H 0.10 2.65 6.71 -52.49 -0.35 2.29 16 8 C 0.08 1.94 5.44 -17.32 -0.09 1.84 16 9 N -0.78 -18.78 13.93 55.55 0.77 -18.00 16 10 Si 0.91 18.77 24.53 -169.99 -4.17 14.60 16 11 H -0.27 -5.32 6.46 56.52 0.37 -4.96 16 12 H -0.29 -5.67 7.11 56.52 0.40 -5.27 16 13 H -0.25 -5.25 7.00 56.52 0.40 -4.85 16 14 C 0.03 0.78 6.42 -82.24 -0.53 0.26 16 15 C 0.02 0.42 5.26 -104.92 -0.55 -0.13 16 16 C -0.05 -1.01 7.78 -39.50 -0.31 -1.32 16 17 C -0.11 -1.89 9.99 -39.95 -0.40 -2.29 16 18 C 0.00 -0.02 7.43 -38.48 -0.29 -0.31 16 19 O -0.22 -3.53 10.77 3.67 0.04 -3.49 16 20 C 0.20 2.74 13.12 51.94 0.68 3.43 16 21 N -0.48 -8.44 11.34 -12.56 -0.14 -8.58 16 22 C 0.01 0.21 7.23 -84.72 -0.61 -0.41 16 23 C -0.05 -1.09 9.71 -38.82 -0.38 -1.47 16 24 N -0.44 -9.94 10.05 -5.45 -0.05 -10.00 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.05 0.77 8.07 -51.93 -0.42 0.35 16 28 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 29 H 0.11 2.49 4.52 -52.48 -0.24 2.25 16 30 H 0.29 6.29 8.30 -40.82 -0.34 5.95 16 31 H 0.15 3.00 6.71 -52.48 -0.35 2.65 16 32 H 0.13 1.94 8.06 -52.49 -0.42 1.51 16 33 H 0.25 1.71 8.06 -52.49 -0.42 1.28 16 34 H 0.13 2.71 8.06 -52.48 -0.42 2.29 16 LS Contribution 292.57 15.07 4.41 4.41 Total: -1.00 -28.20 292.57 -6.37 -34.57 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -3.07 Total: 5.83 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -4.15 Total: -19.34 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.58 Total: -36.58 kcal Atomic # 8 Polarization: -3.53 SS G_CDS: 0.04 Total: -3.49 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -4.17 Total: 14.60 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.20 -6.37 -34.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242596384.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.268 kcal (2) G-P(sol) polarization free energy of solvation -28.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds