Wall clock time and date at job start Tue Mar 31 2020 01:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38874 * 119.24148 * 2 1 4 4 C 1.36882 * 119.80065 * 179.73850 * 3 2 1 5 5 C 1.41119 * 118.39940 * 0.51987 * 4 3 2 6 6 C 1.40875 * 120.72354 * 179.72287 * 5 4 3 7 7 H 1.07999 * 120.00076 * 150.56622 * 6 5 4 8 8 C 1.40060 * 119.99950 * 330.57184 * 6 5 4 9 9 N 1.30783 * 119.99855 * 163.10192 * 8 6 5 10 10 Si 1.86794 * 119.99873 * 343.10056 * 8 6 5 11 11 H 1.48500 * 109.47278 * 90.34093 * 10 8 6 12 12 H 1.48497 * 109.47284 * 210.34479 * 10 8 6 13 13 H 1.48500 * 109.47324 * 330.34456 * 10 8 6 14 14 C 1.41886 * 118.56244 * 359.74880 * 5 4 3 15 15 C 1.47771 * 119.99982 * 180.02562 * 14 5 4 16 16 C 1.40105 * 119.95689 * 316.45147 * 15 14 5 17 17 C 1.36524 * 120.46921 * 179.97438 * 16 15 14 18 18 C 1.38916 * 120.20247 * 359.97438 * 17 16 15 19 19 O 1.35091 * 133.77362 * 180.02562 * 18 17 16 20 20 C 1.34237 * 108.20640 * 179.97438 * 19 18 17 21 21 N 1.29878 * 110.33149 * 0.02562 * 20 19 18 22 22 C 1.36117 * 108.78245 * 359.97438 * 21 20 19 23 23 C 1.39248 * 119.96167 * 136.17913 * 15 14 5 24 24 N 1.31736 * 119.25043 * 180.26567 * 2 1 3 25 25 H 1.09001 * 109.46993 * 269.72686 * 1 2 3 26 26 H 1.08995 * 109.46612 * 149.73116 * 1 2 3 27 27 H 1.08991 * 109.47102 * 29.73158 * 1 2 3 28 28 H 1.08001 * 120.10012 * 0.02562 * 3 2 1 29 29 H 1.08005 * 120.80626 * 180.24603 * 4 3 2 30 30 H 0.97001 * 119.99738 * 180.02562 * 9 8 6 31 31 H 1.08004 * 119.76463 * 359.96007 * 16 15 14 32 32 H 1.07999 * 119.90512 * 180.02562 * 17 16 15 33 33 H 1.08000 * 124.83110 * 179.97438 * 20 19 18 34 34 H 1.08005 * 120.27302 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2118 0.0000 4 6 3.5542 1.2251 0.0054 5 6 4.2375 -0.0096 -0.0004 6 6 5.6455 -0.0529 -0.0010 7 1 6.1604 -0.8858 0.4547 8 6 6.3778 0.9842 -0.5926 9 7 7.6484 1.1269 -0.3176 10 14 5.5396 2.1633 -1.7742 11 1 4.9984 3.3209 -1.0178 12 1 6.5247 2.6436 -2.7763 13 1 4.4292 1.4628 -2.4681 14 6 3.4756 -1.2065 -0.0061 15 6 4.1584 -2.5170 -0.0116 16 6 5.2623 -2.7271 -0.8484 17 6 5.9013 -3.9335 -0.8616 18 6 5.4619 -4.9661 -0.0428 19 8 5.8744 -6.2359 0.1629 20 6 5.0711 -6.7942 1.0820 21 7 4.1695 -5.9436 1.4698 22 6 4.3565 -4.7720 0.8025 23 6 3.7075 -3.5397 0.8189 24 7 2.1507 -1.1494 -0.0053 25 1 -0.3633 -0.0049 1.0277 26 1 -0.3632 -0.8875 -0.5180 27 1 -0.3633 0.8923 -0.5096 28 1 1.6347 2.1408 0.0004 29 1 4.0982 2.1581 0.0095 30 1 8.1555 1.8454 -0.7270 31 1 5.6101 -1.9291 -1.4878 32 1 6.7516 -4.0854 -1.5099 33 1 5.1612 -7.8068 1.4465 34 1 2.8598 -3.3795 1.4687 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242596384.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:49 Heat of formation + Delta-G solvation = 40.701132 kcal Electronic energy + Delta-G solvation = -20694.333947 eV Core-core repulsion = 17557.218975 eV Total energy + Delta-G solvation = -3137.114972 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.12456 -40.83332 -38.74375 -36.13255 -35.66185 -33.82189 -33.39886 -31.21119 -30.56541 -29.56886 -26.35276 -24.90798 -24.11813 -23.23073 -22.67362 -22.13086 -19.43762 -18.91517 -18.33658 -17.61633 -17.55083 -17.40637 -16.34902 -15.69262 -15.35452 -15.28774 -15.10376 -14.81159 -14.68786 -14.21906 -13.77697 -13.53223 -13.46932 -13.15650 -13.02470 -12.82764 -12.61792 -12.50623 -12.39460 -12.03104 -11.77308 -11.45593 -11.34516 -10.43917 -10.07244 -9.87879 -9.50252 -9.15356 -8.98438 -6.52663 -0.16270 -0.06626 0.64336 0.85904 1.23847 1.36987 1.45609 1.56396 1.68801 2.05266 2.53330 2.69159 3.08796 3.42890 3.55646 3.63856 4.12496 4.17317 4.18940 4.34424 4.34976 4.43300 4.51644 4.70025 4.79689 4.93404 4.97213 4.97745 5.05443 5.18823 5.23673 5.33026 5.42758 5.47465 5.56964 5.69471 5.79497 5.95329 6.21000 6.52056 6.62746 6.64085 7.55928 8.05604 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.016290 B = 0.006611 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.441936 B = 4234.360776 C = 5676.935642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.014 4.014 3 C -0.115 4.115 4 C -0.217 4.217 5 C 0.043 3.957 6 C -0.443 4.443 7 H 0.075 0.925 8 C 0.057 3.943 9 N -0.821 5.821 10 Si 0.957 3.043 11 H -0.252 1.252 12 H -0.272 1.272 13 H -0.260 1.260 14 C 0.020 3.980 15 C 0.001 3.999 16 C -0.067 4.067 17 C -0.093 4.093 18 C -0.011 4.011 19 O -0.219 6.219 20 C 0.244 3.756 21 N -0.523 5.523 22 C -0.001 4.001 23 C -0.069 4.069 24 N -0.458 5.458 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.145 0.855 29 H 0.119 0.881 30 H 0.300 0.700 31 H 0.143 0.857 32 H 0.159 0.841 33 H 0.314 0.686 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.535 -6.120 -1.934 7.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.155 4.155 3 C -0.135 4.135 4 C -0.243 4.243 5 C 0.038 3.962 6 C -0.471 4.471 7 H 0.093 0.907 8 C -0.162 4.162 9 N -0.444 5.444 10 Si 0.780 3.220 11 H -0.177 1.177 12 H -0.198 1.198 13 H -0.184 1.184 14 C -0.119 4.119 15 C -0.001 4.001 16 C -0.086 4.086 17 C -0.112 4.112 18 C -0.061 4.061 19 O -0.111 6.111 20 C 0.014 3.986 21 N -0.252 5.252 22 C -0.111 4.111 23 C -0.089 4.089 24 N -0.167 5.167 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.103 0.897 28 H 0.163 0.837 29 H 0.137 0.863 30 H 0.111 0.889 31 H 0.161 0.839 32 H 0.177 0.823 33 H 0.328 0.672 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.192 -6.869 -1.500 8.186 hybrid contribution 1.080 1.447 -0.517 1.878 sum -3.112 -5.422 -2.016 6.569 Atomic orbital electron populations 1.20403 0.87578 1.02752 1.02264 1.21196 0.97545 0.87830 1.08894 1.21620 0.94236 0.99319 0.98296 1.21437 0.95266 0.97299 1.10288 1.18571 0.94383 0.91963 0.91265 1.19366 0.89875 1.06150 1.31743 0.90671 1.26761 0.95102 0.97477 0.96875 1.69661 1.09775 1.29521 1.35487 0.85650 0.78770 0.79006 0.78545 1.17740 1.19831 1.18388 1.19562 0.88666 0.91458 1.12203 1.18302 0.94948 0.91351 0.95486 1.21050 0.93756 0.96066 0.97729 1.19682 1.02317 0.89180 1.00008 1.20484 0.97871 0.85392 1.02355 1.84486 1.51671 1.22437 1.52478 1.29510 0.83103 1.01095 0.84883 1.70557 1.26632 1.00854 1.27135 1.19796 0.98035 0.94536 0.98692 1.20273 0.99565 0.89620 0.99401 1.67018 1.09311 1.30587 1.09737 0.91295 0.92230 0.89727 0.83741 0.86310 0.88941 0.83911 0.82340 0.67199 0.86229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.18 10.15 71.24 0.72 -1.46 16 2 C -0.01 -0.57 6.79 42.73 0.29 -0.28 16 3 C -0.12 -4.54 9.64 22.10 0.21 -4.33 16 4 C -0.22 -9.75 7.31 22.66 0.17 -9.58 16 5 C 0.04 2.11 5.12 -21.02 -0.11 2.01 16 6 C -0.44 -22.55 7.18 23.36 0.17 -22.38 16 7 H 0.08 4.14 6.71 -2.91 -0.02 4.12 16 8 C 0.06 2.72 5.44 85.29 0.46 3.19 16 9 N -0.82 -40.45 13.93 21.85 0.30 -40.14 16 10 Si 0.96 38.64 24.53 68.60 1.68 40.32 16 11 H -0.25 -9.55 6.46 99.48 0.64 -8.91 16 12 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 13 H -0.26 -11.01 7.00 99.48 0.70 -10.31 16 14 C 0.02 0.96 6.42 42.45 0.27 1.23 16 15 C 0.00 0.06 5.26 -20.06 -0.11 -0.04 16 16 C -0.07 -2.77 7.78 22.32 0.17 -2.60 16 17 C -0.09 -3.32 9.99 22.03 0.22 -3.10 16 18 C -0.01 -0.39 7.43 22.98 0.17 -0.21 16 19 O -0.22 -6.32 10.77 -9.77 -0.11 -6.42 16 20 C 0.24 5.68 13.12 130.53 1.71 7.39 16 21 N -0.52 -17.57 11.34 -308.49 -3.50 -21.07 16 22 C 0.00 -0.03 7.23 39.28 0.28 0.25 16 23 C -0.07 -2.96 9.71 22.77 0.22 -2.74 16 24 N -0.46 -21.17 10.05 -171.15 -1.72 -22.89 16 25 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.08 2.04 8.07 -2.39 -0.02 2.02 16 28 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 29 H 0.12 5.11 4.52 -2.91 -0.01 5.10 16 30 H 0.30 13.19 8.30 -92.71 -0.77 12.43 16 31 H 0.14 6.05 6.71 -2.91 -0.02 6.03 16 32 H 0.16 4.58 8.06 -2.91 -0.02 4.56 16 33 H 0.31 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.12 5.26 8.06 -2.91 -0.02 5.24 16 Total: -1.00 -64.27 292.57 2.60 -61.66 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 1.07 Total: 21.21 kcal Atomic # 6 Polarization: -37.53 SS G_CDS: 4.87 Total: -32.66 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -4.91 Total: -84.10 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.11 Total: -6.42 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 1.68 Total: 40.32 kcal Total: -64.27 2.60 -61.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242596384.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.365 kcal (2) G-P(sol) polarization free energy of solvation -64.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds