Wall clock time and date at job start Tue Mar 31 2020 01:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38482 * 119.37864 * 2 1 4 4 C 1.38370 * 119.54457 * 180.02562 * 3 2 1 5 5 C 1.39954 * 118.37743 * 359.97438 * 4 3 2 6 6 C 1.43202 * 120.62596 * 179.97438 * 5 4 3 7 7 N 4.80325 * 135.17031 * 0.02562 * 3 1 2 8 8 C 1.40751 * 118.75659 * 0.02562 * 5 4 3 9 9 C 1.47966 * 119.84430 * 179.97438 * 8 5 4 10 10 C 1.39461 * 120.17670 * 310.13079 * 9 8 5 11 11 C 1.37934 * 119.92970 * 180.02562 * 10 9 8 12 12 C 1.38504 * 120.29865 * 359.97438 * 11 10 9 13 13 C 1.38086 * 120.35585 * 359.97438 * 12 11 10 14 14 C 1.38775 * 120.06089 * 0.02562 * 13 12 11 15 15 O 1.35615 * 120.14564 * 179.97438 * 14 13 12 16 16 C 1.34798 * 117.00048 * 5.61112 * 15 14 13 17 17 H 1.08002 * 120.00101 * 354.93000 * 16 15 14 18 18 C 1.38671 * 120.00305 * 174.93233 * 16 15 14 19 19 N 1.31535 * 120.00265 * 184.98616 * 18 16 15 20 20 Si 1.86805 * 119.99742 * 4.98423 * 18 16 15 21 21 H 1.48505 * 109.46937 * 94.97175 * 20 18 16 22 22 H 1.48497 * 109.47094 * 214.97318 * 20 18 16 23 23 H 1.48500 * 109.46925 * 334.97513 * 20 18 16 24 24 N 1.31719 * 119.37541 * 180.26482 * 2 1 3 25 25 H 1.08999 * 109.46541 * 94.98918 * 1 2 3 26 26 H 1.08993 * 109.47293 * 214.98761 * 1 2 3 27 27 H 1.09004 * 109.46970 * 334.99525 * 1 2 3 28 28 H 1.08002 * 120.22578 * 359.97076 * 3 2 1 29 29 H 1.08001 * 120.81345 * 179.97438 * 4 3 2 30 30 H 1.07991 * 120.03494 * 0.02562 * 10 9 8 31 31 H 1.07998 * 119.85328 * 180.02562 * 11 10 9 32 32 H 1.07996 * 119.82010 * 179.97438 * 12 11 10 33 33 H 1.08002 * 119.96808 * 179.73973 * 13 12 11 34 34 H 0.97004 * 120.00007 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2067 0.0000 4 6 3.5701 1.2107 -0.0005 5 6 4.2388 -0.0187 -0.0005 6 6 5.6699 -0.0707 -0.0016 7 7 6.8051 -0.1119 -0.0015 8 6 3.4784 -1.2031 -0.0005 9 6 4.1606 -2.5161 -0.0011 10 6 5.1731 -2.7797 -0.9233 11 6 5.8052 -4.0056 -0.9196 12 6 5.4397 -4.9776 -0.0031 13 6 4.4396 -4.7292 0.9161 14 6 3.7937 -3.5009 0.9257 15 8 2.8109 -3.2553 1.8273 16 6 2.5875 -4.2007 2.7618 17 1 3.1221 -5.1382 2.7202 18 6 1.6711 -3.9697 3.7766 19 7 1.5242 -4.8498 4.7430 20 14 0.6454 -2.4084 3.7712 21 1 -0.6664 -2.6802 3.1303 22 1 0.4291 -1.9534 5.1681 23 1 1.3581 -1.3506 3.0108 24 7 2.1532 -1.1478 -0.0053 25 1 -0.3632 -0.0894 -1.0238 26 1 -0.3633 -0.8419 0.5892 27 1 -0.3633 0.9314 0.4344 28 1 1.6399 2.1383 -0.0005 29 1 4.1206 2.1399 -0.0010 30 1 5.4617 -2.0248 -1.6395 31 1 6.5894 -4.2083 -1.6340 32 1 5.9396 -5.9349 -0.0073 33 1 4.1567 -5.4931 1.6252 34 1 0.8834 -4.6879 5.4531 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243580335.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:58 Heat of formation + Delta-G solvation = 45.712546 kcal Electronic energy + Delta-G solvation = -20893.295329 eV Core-core repulsion = 17756.397668 eV Total energy + Delta-G solvation = -3136.897661 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.68231 -40.54889 -38.35334 -37.65903 -34.59313 -34.38769 -33.81012 -31.43854 -30.70616 -28.94102 -27.27797 -25.36253 -23.91412 -23.01088 -22.41403 -20.03237 -19.83768 -19.15469 -17.69617 -17.23990 -16.62472 -16.21686 -15.77888 -15.63086 -15.47308 -15.34865 -15.07236 -14.61757 -14.33481 -14.29542 -14.11242 -14.03203 -13.83375 -13.30498 -13.19867 -13.06929 -12.91959 -12.57692 -12.55656 -12.40419 -11.98497 -11.41532 -10.94506 -10.89021 -10.48968 -10.18011 -9.58023 -9.05431 -8.53134 -6.23094 -0.52909 0.05127 0.55626 0.66535 1.27743 1.33458 1.51773 1.56354 1.91628 2.27665 2.62684 2.77417 2.86025 2.93470 3.12191 3.17128 3.66296 3.80259 4.01992 4.07791 4.19174 4.33893 4.40998 4.52497 4.60194 4.74635 4.79069 4.81500 4.95694 5.04385 5.09464 5.18336 5.34245 5.46034 5.60908 5.64907 5.70812 5.83134 6.12576 6.36981 6.81594 7.02287 7.56439 8.57688 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.012280 B = 0.009146 C = 0.006019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.504940 B = 3060.872358 C = 4650.893613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.140 3.860 3 C -0.168 4.168 4 C -0.012 4.012 5 C -0.107 4.107 6 C 0.282 3.718 7 N -0.443 5.443 8 C 0.232 3.768 9 C -0.150 4.150 10 C -0.052 4.052 11 C -0.187 4.187 12 C -0.056 4.056 13 C -0.244 4.244 14 C 0.158 3.842 15 O -0.212 6.212 16 C -0.400 4.400 17 H 0.083 0.917 18 C 0.016 3.984 19 N -0.918 5.918 20 Si 0.963 3.037 21 H -0.261 1.261 22 H -0.273 1.273 23 H -0.258 1.258 24 N -0.501 5.501 25 H 0.101 0.899 26 H 0.052 0.948 27 H 0.113 0.887 28 H 0.192 0.808 29 H 0.185 0.815 30 H 0.134 0.866 31 H 0.153 0.847 32 H 0.148 0.852 33 H 0.117 0.883 34 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.119 13.653 -11.919 18.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.001 3.999 3 C -0.188 4.188 4 C -0.039 4.039 5 C -0.113 4.113 6 C -0.033 4.033 7 N -0.119 5.119 8 C 0.093 3.907 9 C -0.152 4.152 10 C -0.071 4.071 11 C -0.205 4.205 12 C -0.074 4.074 13 C -0.263 4.263 14 C 0.106 3.894 15 O -0.117 6.117 16 C -0.476 4.476 17 H 0.100 0.900 18 C -0.184 4.184 19 N -0.558 5.558 20 Si 0.786 3.214 21 H -0.186 1.186 22 H -0.198 1.198 23 H -0.182 1.182 24 N -0.211 5.211 25 H 0.119 0.881 26 H 0.071 0.929 27 H 0.131 0.869 28 H 0.209 0.791 29 H 0.202 0.798 30 H 0.152 0.848 31 H 0.171 0.829 32 H 0.166 0.834 33 H 0.135 0.865 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.874 12.952 -11.692 17.471 hybrid contribution -0.349 0.143 0.663 0.762 sum 0.525 13.095 -11.029 17.129 Atomic orbital electron populations 1.20958 0.86890 1.04433 1.04464 1.22232 0.98841 0.88383 0.90406 1.22349 0.94001 1.00084 1.02330 1.21981 0.94835 0.96358 0.90726 1.17060 0.85172 0.95825 1.13194 1.25332 0.92274 0.92800 0.92934 1.81192 1.12370 1.08278 1.10091 1.19650 0.88767 0.91188 0.91104 1.17900 1.02791 0.92610 1.01917 1.21002 0.92731 0.97749 0.95650 1.21077 1.03606 0.93497 1.02370 1.21301 0.93901 0.99917 0.92318 1.21343 1.02626 0.97612 1.04705 1.19488 0.87343 0.93094 0.89503 1.83599 1.46864 1.43787 1.37482 1.20764 1.25460 0.96861 1.04537 0.89996 1.25212 0.98107 1.01825 0.93216 1.69729 1.36487 1.37583 1.12012 0.85290 0.79175 0.79336 0.77642 1.18607 1.19816 1.18190 1.67762 1.08407 1.31051 1.13836 0.88057 0.92852 0.86861 0.79058 0.79816 0.84799 0.82899 0.83401 0.86492 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.33 10.18 71.24 0.73 -1.61 16 2 C 0.14 3.86 6.78 42.63 0.29 4.14 16 3 C -0.17 -3.17 9.69 22.36 0.22 -2.96 16 4 C -0.01 -0.24 9.90 22.72 0.22 -0.02 16 5 C -0.11 -3.17 5.75 -21.00 -0.12 -3.29 16 6 C 0.28 8.77 12.67 88.33 1.12 9.89 16 7 N -0.44 -14.85 18.54 19.00 0.35 -14.49 16 8 C 0.23 8.68 6.04 42.22 0.26 8.93 16 9 C -0.15 -6.17 5.24 -19.95 -0.10 -6.28 16 10 C -0.05 -1.81 8.43 22.49 0.19 -1.62 16 11 C -0.19 -5.93 10.03 22.26 0.22 -5.70 16 12 C -0.06 -1.97 10.03 22.30 0.22 -1.74 16 13 C -0.24 -10.88 9.16 22.36 0.20 -10.68 16 14 C 0.16 7.62 6.63 22.85 0.15 7.77 16 15 O -0.21 -11.60 7.61 -20.93 -0.16 -11.76 16 16 C -0.40 -23.61 9.94 67.92 0.68 -22.93 16 17 H 0.08 5.05 5.44 -2.91 -0.02 5.03 16 18 C 0.02 0.90 5.49 84.84 0.47 1.37 16 19 N -0.92 -54.85 13.96 21.62 0.30 -54.55 16 20 Si 0.96 45.49 28.62 68.60 1.96 47.46 16 21 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 24 N -0.50 -18.87 9.61 -172.15 -1.65 -20.52 16 25 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.11 1.50 8.04 -2.39 -0.02 1.48 16 28 H 0.19 1.66 8.06 -2.91 -0.02 1.64 16 29 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 30 H 0.13 3.99 7.26 -2.92 -0.02 3.96 16 31 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 32 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 33 H 0.12 5.63 5.64 -2.91 -0.02 5.61 16 34 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -73.73 308.82 6.69 -67.04 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 1.14 Total: 11.55 kcal Atomic # 6 Polarization: -29.46 SS G_CDS: 4.74 Total: -24.72 kcal Atomic # 7 Polarization: -88.57 SS G_CDS: -1.00 Total: -89.57 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -0.16 Total: -11.76 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.96 Total: 47.46 kcal Total: -73.73 6.69 -67.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243580335.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.757 kcal (2) G-P(sol) polarization free energy of solvation -73.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds