Wall clock time and date at job start Tue Mar 31 2020 01:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38019 * 120.80513 * 2 1 4 4 C 1.39562 * 119.22273 * 179.97438 * 3 2 1 5 5 C 1.48056 * 119.57046 * 179.97438 * 4 3 2 6 6 C 1.39429 * 120.17001 * 359.72182 * 5 4 3 7 7 C 1.37947 * 119.92898 * 179.71977 * 6 5 4 8 8 C 1.38492 * 120.29268 * 0.55551 * 7 6 5 9 9 C 1.38082 * 120.35312 * 359.72276 * 8 7 6 10 10 C 1.38784 * 120.05384 * 359.97438 * 9 8 7 11 11 O 1.35613 * 120.13768 * 179.97438 * 10 9 8 12 12 C 1.34805 * 117.00434 * 354.40086 * 11 10 9 13 13 H 1.07994 * 120.00064 * 5.06321 * 12 11 10 14 14 C 1.38677 * 119.99802 * 185.06150 * 12 11 10 15 15 N 1.31538 * 120.00050 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99639 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47236 * 90.00181 * 16 14 12 18 18 H 1.48503 * 109.46854 * 209.99966 * 16 14 12 19 19 H 1.48504 * 109.47117 * 329.99800 * 16 14 12 20 20 N 1.32847 * 120.86235 * 0.02562 * 4 3 2 21 21 C 1.31492 * 121.76214 * 359.97438 * 20 4 3 22 22 C 1.39745 * 120.68523 * 359.73573 * 21 20 4 23 23 C 1.43194 * 120.46030 * 180.29059 * 22 21 20 24 24 N 3.49465 * 81.50425 * 179.71680 * 2 1 3 25 25 H 1.08999 * 109.47288 * 90.00516 * 1 2 3 26 26 H 1.08999 * 109.47109 * 329.99614 * 1 2 3 27 27 H 1.09000 * 109.46895 * 210.00106 * 1 2 3 28 28 H 1.08001 * 120.38406 * 359.95157 * 3 2 1 29 29 H 1.07998 * 120.03153 * 0.02562 * 6 5 4 30 30 H 1.07999 * 119.84827 * 180.25605 * 7 6 5 31 31 H 1.08008 * 119.82249 * 179.73953 * 8 7 6 32 32 H 1.08002 * 119.97168 * 180.02562 * 9 8 7 33 33 H 0.96999 * 119.99815 * 179.97438 * 15 14 12 34 34 H 1.08006 * 119.65617 * 179.97438 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2138 1.1855 0.0000 4 6 3.6089 1.1469 0.0005 5 6 4.3748 2.4140 0.0000 6 6 3.7058 3.6372 -0.0070 7 6 4.4243 4.8148 -0.0016 8 6 5.8090 4.7882 -0.0010 9 6 6.4838 3.5835 0.0001 10 6 5.7754 2.3900 0.0011 11 8 6.4363 1.2059 0.0016 12 6 7.7784 1.2540 -0.1161 13 1 8.2860 2.2071 -0.1229 14 6 8.5071 0.0794 -0.2283 15 7 7.8887 -1.0815 -0.2205 16 14 10.3668 0.1461 -0.3906 17 1 10.9833 0.1072 0.9598 18 1 10.8366 -1.0188 -1.1829 19 1 10.7590 1.4027 -1.0779 20 7 4.2586 -0.0118 0.0005 21 6 3.6220 -1.1623 0.0005 22 6 2.2252 -1.2045 0.0061 23 6 1.5368 -2.4601 0.0123 24 7 0.9907 -3.4563 0.0171 25 1 -0.3634 -0.0001 -1.0276 26 1 -0.3633 0.8899 0.5139 27 1 -0.3633 -0.8900 0.5139 28 1 1.6933 2.1318 -0.0008 29 1 2.6261 3.6628 -0.0115 30 1 3.9047 5.7615 -0.0028 31 1 6.3640 5.7148 -0.0010 32 1 7.5637 3.5699 0.0010 33 1 8.3983 -1.9030 -0.2994 34 1 4.1845 -2.0844 0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243580628.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:38 Heat of formation + Delta-G solvation = 67.915727 kcal Electronic energy + Delta-G solvation = -20376.409363 eV Core-core repulsion = 17240.474504 eV Total energy + Delta-G solvation = -3135.934859 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.11895 -38.83483 -36.56476 -36.23000 -33.72396 -32.44764 -32.21933 -29.41889 -28.75023 -27.74200 -25.42354 -24.27890 -22.48041 -21.44841 -20.53400 -18.51763 -17.99723 -17.16890 -16.35431 -15.70817 -14.81096 -14.48260 -14.34200 -14.19702 -14.02937 -13.72761 -13.55976 -13.05190 -12.94612 -12.76770 -12.57666 -12.51108 -12.46829 -12.26816 -11.75147 -11.51275 -11.41014 -10.95553 -10.87133 -10.74627 -10.50416 -9.50002 -9.29644 -9.16101 -8.90809 -8.69824 -7.92617 -7.16095 -6.52881 -4.06148 0.71971 1.62509 2.14136 2.32109 2.85628 3.08523 3.09622 3.13706 3.33963 3.88718 4.12999 4.20951 4.65532 4.71982 4.82726 4.86408 5.03062 5.14607 5.34630 5.46441 5.49867 5.56744 5.62043 5.69616 5.90749 5.99207 6.03728 6.12876 6.31811 6.38679 6.57951 6.68061 6.92008 6.98871 7.15587 7.25740 7.28933 7.67678 7.69553 7.87869 8.60414 8.89317 9.62319 10.60742 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.013992 B = 0.006301 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.693656 B = 4442.774245 C = 6424.633052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.004 3.996 3 C -0.195 4.195 4 C 0.232 3.768 5 C -0.161 4.161 6 C -0.041 4.041 7 C -0.227 4.227 8 C -0.055 4.055 9 C -0.238 4.238 10 C 0.177 3.823 11 O -0.112 6.112 12 C -0.397 4.397 13 H 0.092 0.908 14 C 0.047 3.953 15 N -0.829 5.829 16 Si 0.938 3.062 17 H -0.273 1.273 18 H -0.277 1.277 19 H -0.267 1.267 20 N -0.435 5.435 21 C 0.181 3.819 22 C -0.136 4.136 23 C 0.276 3.724 24 N -0.442 5.442 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.138 0.862 29 H 0.117 0.883 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.130 0.870 33 H 0.270 0.730 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.947 6.782 0.144 10.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.005 4.005 3 C -0.215 4.215 4 C 0.098 3.902 5 C -0.164 4.164 6 C -0.060 4.060 7 C -0.246 4.246 8 C -0.074 4.074 9 C -0.257 4.257 10 C 0.117 3.883 11 O -0.009 6.009 12 C -0.473 4.473 13 H 0.110 0.890 14 C -0.161 4.161 15 N -0.461 5.461 16 Si 0.762 3.238 17 H -0.198 1.198 18 H -0.202 1.202 19 H -0.191 1.191 20 N -0.143 5.143 21 C 0.017 3.983 22 C -0.143 4.143 23 C -0.038 4.038 24 N -0.119 5.119 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.156 0.844 29 H 0.135 0.865 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.148 0.852 33 H 0.080 0.920 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.860 4.700 0.151 9.159 hybrid contribution 0.387 0.481 -0.085 0.623 sum -7.473 5.181 0.066 9.094 Atomic orbital electron populations 1.20865 0.90404 1.03255 1.03016 1.20029 0.95970 0.91351 0.93160 1.21764 0.94476 0.97971 1.07293 1.20077 0.89368 0.92008 0.88758 1.17540 0.90019 0.90561 1.18235 1.20741 0.98449 0.90938 0.95841 1.20469 0.93999 0.96957 1.13186 1.20892 0.94218 0.96782 0.95503 1.21175 1.00757 0.91957 1.11789 1.19349 0.90726 0.86621 0.91565 1.84224 1.20311 1.23457 1.72865 1.21526 0.79213 0.94794 1.51724 0.89042 1.25302 1.00377 0.94215 0.96235 1.70087 1.36200 0.97410 1.42355 0.85764 0.80717 0.78549 0.78744 1.19820 1.20190 1.19135 1.68325 1.37957 0.96635 1.11341 1.23075 0.88360 0.97458 0.89429 1.17020 0.94302 0.86778 1.16194 1.25497 0.92909 0.92598 0.92844 1.81194 1.09087 1.10949 1.10659 0.90269 0.90457 0.91501 0.84430 0.86520 0.87258 0.87299 0.85242 0.91951 0.82172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 9.68 36.01 0.35 -0.88 16 2 C 0.00 0.06 5.95 -103.95 -0.62 -0.56 16 3 C -0.19 -2.90 9.14 -39.17 -0.36 -3.25 16 4 C 0.23 4.45 6.73 -82.91 -0.56 3.89 16 5 C -0.16 -3.20 5.89 -104.74 -0.62 -3.82 16 6 C -0.04 -0.66 9.41 -39.24 -0.37 -1.03 16 7 C -0.23 -3.54 10.03 -39.59 -0.40 -3.93 16 8 C -0.06 -0.93 10.03 -39.54 -0.40 -1.32 16 9 C -0.24 -4.80 9.16 -39.44 -0.36 -5.16 16 10 C 0.18 4.03 6.65 -38.69 -0.26 3.78 16 11 O -0.11 -2.94 7.58 0.54 0.00 -2.94 16 12 C -0.40 -10.34 9.49 30.89 0.29 -10.04 16 13 H 0.09 2.20 5.21 -52.49 -0.27 1.93 16 14 C 0.05 1.20 5.49 -17.52 -0.10 1.10 16 15 N -0.83 -22.52 13.67 55.48 0.76 -21.76 16 16 Si 0.94 19.36 29.55 -169.99 -5.02 14.34 16 17 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 18 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 19 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 20 N -0.43 -9.33 8.12 -9.45 -0.08 -9.41 16 21 C 0.18 3.30 10.91 -17.13 -0.19 3.12 16 22 C -0.14 -2.14 5.75 -106.66 -0.61 -2.75 16 23 C 0.28 4.33 13.95 -22.47 -0.31 4.01 16 24 N -0.44 -7.47 18.54 41.84 0.78 -6.69 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 27 H 0.07 0.71 7.18 -51.93 -0.37 0.34 16 28 H 0.14 1.62 6.17 -52.49 -0.32 1.30 16 29 H 0.12 1.48 6.17 -52.49 -0.32 1.15 16 30 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 32 H 0.13 2.60 5.64 -52.49 -0.30 2.30 16 33 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 34 H 0.16 2.81 8.06 -52.48 -0.42 2.39 16 LS Contribution 306.14 15.07 4.61 4.61 Total: -1.00 -29.29 306.14 -6.29 -35.57 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -2.84 Total: 3.13 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -4.50 Total: -16.85 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 1.46 Total: -37.86 kcal Atomic # 8 Polarization: -2.94 SS G_CDS: 0.00 Total: -2.94 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.29 -6.29 -35.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243580628.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.488 kcal (2) G-P(sol) polarization free energy of solvation -29.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds