Wall clock time and date at job start Tue Mar 31 2020 01:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38019 * 120.80513 * 2 1 4 4 C 1.39562 * 119.22273 * 179.97438 * 3 2 1 5 5 C 1.48056 * 119.57046 * 179.97438 * 4 3 2 6 6 C 1.39429 * 120.17001 * 359.72182 * 5 4 3 7 7 C 1.37947 * 119.92898 * 179.71977 * 6 5 4 8 8 C 1.38492 * 120.29268 * 0.55551 * 7 6 5 9 9 C 1.38082 * 120.35312 * 359.72276 * 8 7 6 10 10 C 1.38784 * 120.05384 * 359.97438 * 9 8 7 11 11 O 1.35613 * 120.13768 * 179.97438 * 10 9 8 12 12 C 1.34805 * 117.00434 * 354.40086 * 11 10 9 13 13 H 1.07994 * 120.00064 * 5.06321 * 12 11 10 14 14 C 1.38677 * 119.99802 * 185.06150 * 12 11 10 15 15 N 1.31538 * 120.00050 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99639 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47236 * 90.00181 * 16 14 12 18 18 H 1.48503 * 109.46854 * 209.99966 * 16 14 12 19 19 H 1.48504 * 109.47117 * 329.99800 * 16 14 12 20 20 N 1.32847 * 120.86235 * 0.02562 * 4 3 2 21 21 C 1.31492 * 121.76214 * 359.97438 * 20 4 3 22 22 C 1.39745 * 120.68523 * 359.73573 * 21 20 4 23 23 C 1.43194 * 120.46030 * 180.29059 * 22 21 20 24 24 N 3.49465 * 81.50425 * 179.71680 * 2 1 3 25 25 H 1.08999 * 109.47288 * 90.00516 * 1 2 3 26 26 H 1.08999 * 109.47109 * 329.99614 * 1 2 3 27 27 H 1.09000 * 109.46895 * 210.00106 * 1 2 3 28 28 H 1.08001 * 120.38406 * 359.95157 * 3 2 1 29 29 H 1.07998 * 120.03153 * 0.02562 * 6 5 4 30 30 H 1.07999 * 119.84827 * 180.25605 * 7 6 5 31 31 H 1.08008 * 119.82249 * 179.73953 * 8 7 6 32 32 H 1.08002 * 119.97168 * 180.02562 * 9 8 7 33 33 H 0.96999 * 119.99815 * 179.97438 * 15 14 12 34 34 H 1.08006 * 119.65617 * 179.97438 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2138 1.1855 0.0000 4 6 3.6089 1.1469 0.0005 5 6 4.3748 2.4140 0.0000 6 6 3.7058 3.6372 -0.0070 7 6 4.4243 4.8148 -0.0016 8 6 5.8090 4.7882 -0.0010 9 6 6.4838 3.5835 0.0001 10 6 5.7754 2.3900 0.0011 11 8 6.4363 1.2059 0.0016 12 6 7.7784 1.2540 -0.1161 13 1 8.2860 2.2071 -0.1229 14 6 8.5071 0.0794 -0.2283 15 7 7.8887 -1.0815 -0.2205 16 14 10.3668 0.1461 -0.3906 17 1 10.9833 0.1072 0.9598 18 1 10.8366 -1.0188 -1.1829 19 1 10.7590 1.4027 -1.0779 20 7 4.2586 -0.0118 0.0005 21 6 3.6220 -1.1623 0.0005 22 6 2.2252 -1.2045 0.0061 23 6 1.5368 -2.4601 0.0123 24 7 0.9907 -3.4563 0.0171 25 1 -0.3634 -0.0001 -1.0276 26 1 -0.3633 0.8899 0.5139 27 1 -0.3633 -0.8900 0.5139 28 1 1.6933 2.1318 -0.0008 29 1 2.6261 3.6628 -0.0115 30 1 3.9047 5.7615 -0.0028 31 1 6.3640 5.7148 -0.0010 32 1 7.5637 3.5699 0.0010 33 1 8.3983 -1.9030 -0.2994 34 1 4.1845 -2.0844 0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243580628.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:37 Heat of formation + Delta-G solvation = 51.277930 kcal Electronic energy + Delta-G solvation = -20377.130832 eV Core-core repulsion = 17240.474504 eV Total energy + Delta-G solvation = -3136.656328 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.49773 -40.33761 -38.05909 -37.61902 -34.94960 -34.19250 -33.64933 -30.81120 -30.21932 -28.81449 -27.19814 -25.63913 -23.82158 -22.94149 -21.87948 -19.92267 -19.57268 -18.74093 -17.70949 -17.15020 -16.33447 -15.90136 -15.79288 -15.60003 -15.35241 -15.28521 -14.94027 -14.34518 -14.19539 -14.11375 -14.04476 -13.77037 -13.52957 -13.47036 -13.38384 -12.95378 -12.67308 -12.48245 -12.32584 -12.17309 -12.03135 -11.15686 -10.73440 -10.60332 -10.41769 -10.06875 -9.32567 -8.70128 -8.34896 -5.98688 -0.62051 0.38559 0.72083 0.87579 1.38003 1.46670 1.53187 1.54089 2.00557 2.21378 2.80214 2.81818 3.06493 3.39088 3.43621 3.60829 3.64302 3.66940 4.13384 4.26286 4.28409 4.43050 4.52118 4.66263 4.71294 4.76812 4.83131 4.94060 5.09089 5.16462 5.21824 5.24916 5.31454 5.62127 5.72821 5.80469 5.83252 6.09001 6.29808 6.36612 7.06821 7.25452 7.93271 8.83538 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.013992 B = 0.006301 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.693656 B = 4442.774245 C = 6424.633052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.016 3.984 3 C -0.172 4.172 4 C 0.201 3.799 5 C -0.171 4.171 6 C -0.037 4.037 7 C -0.203 4.203 8 C -0.053 4.053 9 C -0.263 4.263 10 C 0.140 3.860 11 O -0.163 6.163 12 C -0.421 4.421 13 H 0.096 0.904 14 C -0.011 4.011 15 N -0.888 5.888 16 Si 1.007 2.993 17 H -0.267 1.267 18 H -0.275 1.275 19 H -0.256 1.256 20 N -0.486 5.486 21 C 0.159 3.841 22 C -0.123 4.123 23 C 0.292 3.708 24 N -0.457 5.457 25 H 0.098 0.902 26 H 0.109 0.891 27 H 0.063 0.937 28 H 0.183 0.817 29 H 0.165 0.835 30 H 0.158 0.842 31 H 0.144 0.856 32 H 0.116 0.884 33 H 0.267 0.733 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.369 10.191 0.089 15.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.006 3.994 3 C -0.191 4.191 4 C 0.067 3.933 5 C -0.174 4.174 6 C -0.056 4.056 7 C -0.221 4.221 8 C -0.071 4.071 9 C -0.283 4.283 10 C 0.085 3.915 11 O -0.065 6.065 12 C -0.498 4.498 13 H 0.113 0.887 14 C -0.212 4.212 15 N -0.523 5.523 16 Si 0.828 3.172 17 H -0.192 1.192 18 H -0.200 1.200 19 H -0.180 1.180 20 N -0.194 5.194 21 C -0.004 4.004 22 C -0.129 4.129 23 C -0.023 4.023 24 N -0.133 5.133 25 H 0.116 0.884 26 H 0.128 0.872 27 H 0.082 0.918 28 H 0.200 0.800 29 H 0.183 0.817 30 H 0.175 0.825 31 H 0.161 0.839 32 H 0.134 0.866 33 H 0.076 0.924 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.318 8.168 0.100 13.958 hybrid contribution 1.030 -0.315 -0.051 1.079 sum -10.288 7.853 0.049 12.943 Atomic orbital electron populations 1.20995 0.86845 1.04768 1.04611 1.20498 0.98155 0.89937 0.90798 1.22095 0.92373 1.00097 1.04526 1.20361 0.91384 0.91110 0.90439 1.18150 0.89256 0.92747 1.17204 1.21294 1.00849 0.89331 0.94095 1.21113 0.93406 0.98761 1.08847 1.21337 0.95470 0.96545 0.93735 1.21287 1.00504 0.92894 1.13583 1.20107 0.92486 0.86846 0.92109 1.84236 1.20053 1.25096 1.77075 1.21863 0.80173 0.95198 1.52557 0.88706 1.26359 1.05002 0.93726 0.96075 1.70244 1.37717 0.97919 1.46402 0.84747 0.74932 0.78710 0.78815 1.19244 1.20018 1.17991 1.68187 1.40316 0.98174 1.12733 1.22948 0.89699 0.96618 0.91124 1.17019 0.93166 0.87806 1.14911 1.25350 0.92351 0.92266 0.92331 1.81213 1.09941 1.11144 1.11039 0.88390 0.87213 0.91785 0.79987 0.81738 0.82455 0.83858 0.86622 0.92369 0.83442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.80 9.68 71.24 0.69 -1.11 16 2 C 0.02 0.38 5.95 -19.43 -0.12 0.26 16 3 C -0.17 -4.46 9.14 22.54 0.21 -4.25 16 4 C 0.20 7.64 6.73 41.92 0.28 7.92 16 5 C -0.17 -6.68 5.89 -19.94 -0.12 -6.80 16 6 C -0.04 -1.03 9.41 22.49 0.21 -0.82 16 7 C -0.20 -5.21 10.03 22.26 0.22 -4.99 16 8 C -0.05 -1.61 10.03 22.29 0.22 -1.38 16 9 C -0.26 -10.85 9.16 22.36 0.20 -10.64 16 10 C 0.14 6.64 6.65 22.85 0.15 6.79 16 11 O -0.16 -9.32 7.58 -20.98 -0.16 -9.48 16 12 C -0.42 -23.84 9.49 67.92 0.64 -23.19 16 13 H 0.10 4.97 5.21 -2.91 -0.02 4.96 16 14 C -0.01 -0.61 5.49 84.84 0.47 -0.14 16 15 N -0.89 -52.69 13.67 21.62 0.30 -52.39 16 16 Si 1.01 42.46 29.55 68.60 2.03 44.49 16 17 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 18 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 19 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 20 N -0.49 -22.05 8.12 -183.82 -1.49 -23.55 16 21 C 0.16 6.17 10.91 85.11 0.93 7.10 16 22 C -0.12 -3.76 5.75 -21.19 -0.12 -3.88 16 23 C 0.29 8.89 13.95 88.33 1.23 10.12 16 24 N -0.46 -15.01 18.54 19.00 0.35 -14.66 16 25 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.11 1.08 8.10 -2.39 -0.02 1.06 16 27 H 0.06 1.09 7.18 -2.39 -0.02 1.08 16 28 H 0.18 3.01 6.17 -2.91 -0.02 2.99 16 29 H 0.17 2.93 6.17 -2.91 -0.02 2.91 16 30 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 31 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 32 H 0.12 4.94 5.64 -2.91 -0.02 4.92 16 33 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 34 H 0.15 5.81 8.06 -2.91 -0.02 5.79 16 Total: -1.00 -73.09 306.14 7.29 -65.80 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 1.16 Total: 14.80 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: 5.11 Total: -25.01 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -0.84 Total: -90.60 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -0.16 Total: -9.48 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -73.09 7.29 -65.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243580628.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.080 kcal (2) G-P(sol) polarization free energy of solvation -73.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds