Wall clock time and date at job start Tue Mar 31 2020 01:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38474 * 120.23351 * 2 1 4 4 N 1.31716 * 121.25075 * 180.02562 * 3 2 1 5 5 C 1.32646 * 121.76513 * 359.97438 * 4 3 2 6 6 C 1.47960 * 119.84747 * 180.02562 * 5 4 3 7 7 C 1.39462 * 120.17651 * 130.10193 * 6 5 4 8 8 C 1.37935 * 119.93138 * 180.02562 * 7 6 5 9 9 C 1.38500 * 120.29480 * 0.02562 * 8 7 6 10 10 C 1.38083 * 120.35777 * 0.02562 * 9 8 7 11 11 C 1.38775 * 120.06218 * 359.68288 * 10 9 8 12 12 O 1.35609 * 120.15007 * 180.29943 * 11 10 9 13 13 C 1.34812 * 116.99659 * 5.75093 * 12 11 10 14 14 H 1.07997 * 120.00032 * 5.46392 * 13 12 11 15 15 C 1.38671 * 119.99858 * 185.45222 * 13 12 11 16 16 N 1.31533 * 120.00065 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99920 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47016 * 90.00188 * 17 15 13 19 19 H 1.48497 * 109.47279 * 210.00450 * 17 15 13 20 20 H 1.48501 * 109.46959 * 330.00645 * 17 15 13 21 21 C 1.40743 * 120.30725 * 0.02562 * 5 4 3 22 22 C 1.43204 * 120.62226 * 179.97438 * 21 5 4 23 23 N 4.80334 * 136.32383 * 180.02562 * 2 1 3 24 24 C 1.38374 * 120.22292 * 179.72620 * 2 1 3 25 25 H 1.09001 * 109.47390 * 89.99694 * 1 2 3 26 26 H 1.08996 * 109.47461 * 210.00134 * 1 2 3 27 27 H 1.09000 * 109.46633 * 329.99825 * 1 2 3 28 28 H 1.07998 * 119.37511 * 359.97438 * 3 2 1 29 29 H 1.07999 * 120.03299 * 0.02562 * 7 6 5 30 30 H 1.07996 * 119.84747 * 180.02562 * 8 7 6 31 31 H 1.07999 * 119.81443 * 179.97438 * 9 8 7 32 32 H 1.08001 * 119.96258 * 179.97438 * 10 9 8 33 33 H 0.97011 * 120.00186 * 179.97438 * 16 15 13 34 34 H 1.08003 * 120.81782 * 359.97016 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2043 1.1964 0.0000 4 7 3.5212 1.2198 -0.0005 5 6 4.2394 0.1046 -0.0005 6 6 5.7171 0.1803 -0.0005 7 6 6.4570 -0.5594 0.9216 8 6 7.8343 -0.4845 0.9175 9 6 8.4873 0.3230 0.0012 10 6 7.7667 1.0614 -0.9165 11 6 6.3807 0.9926 -0.9295 12 8 5.6715 1.7123 -1.8340 13 6 6.3740 2.3819 -2.7696 14 1 7.4454 2.2602 -2.8302 15 6 5.7210 3.2268 -3.6542 16 7 4.4161 3.3753 -3.5802 17 14 6.6944 4.1542 -4.9511 18 1 6.7804 3.3340 -6.1861 19 1 6.0142 5.4385 -5.2563 20 1 8.0624 4.4273 -4.4420 21 6 3.6024 -1.1505 -0.0006 22 6 4.3712 -2.3587 -0.0011 23 7 4.9811 -3.3171 -0.0015 24 6 2.2036 -1.1956 0.0057 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3632 0.8900 0.5139 28 1 1.6579 2.1280 -0.0004 29 1 5.9520 -1.1901 1.6383 30 1 8.4059 -1.0583 1.6319 31 1 9.5660 0.3761 0.0051 32 1 8.2825 1.6893 -1.6279 33 1 3.9593 3.9666 -4.1988 34 1 1.6806 -2.1406 0.0107 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243580799.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:05 Heat of formation + Delta-G solvation = 61.260754 kcal Electronic energy + Delta-G solvation = -20617.108888 eV Core-core repulsion = 17480.885448 eV Total energy + Delta-G solvation = -3136.223440 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.20934 -38.80565 -36.58898 -36.12591 -33.69685 -32.35632 -32.12522 -30.22436 -29.00507 -26.55506 -25.41864 -24.27621 -22.94704 -21.55225 -20.79525 -18.12420 -18.01762 -17.34146 -16.48870 -15.95770 -14.79720 -14.74561 -14.29323 -14.08714 -13.75828 -13.60319 -13.50047 -13.23455 -12.91784 -12.73552 -12.65960 -12.52157 -12.35218 -12.23533 -11.75596 -11.62870 -11.38193 -10.96917 -10.81343 -10.77607 -10.48611 -9.52474 -9.48196 -9.06907 -8.90110 -8.77863 -7.99821 -7.24121 -6.50861 -4.07804 0.86116 1.36415 2.12984 2.33128 2.95630 3.10177 3.10645 3.15074 3.31509 3.91042 4.07836 4.19340 4.47960 4.65572 4.92431 4.99523 5.09874 5.13571 5.14699 5.25057 5.57317 5.62849 5.64388 5.77923 5.87003 5.98553 6.06049 6.08701 6.26507 6.33073 6.58648 6.68056 6.83985 6.99696 7.12828 7.27342 7.29656 7.69936 7.75019 7.91191 8.40156 8.93111 9.62395 10.65035 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.013282 B = 0.007117 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.596804 B = 3933.088349 C = 5532.872387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.164 4.164 3 C 0.144 3.856 4 N -0.443 5.443 5 C 0.257 3.743 6 C -0.155 4.155 7 C -0.044 4.044 8 C -0.217 4.217 9 C -0.057 4.057 10 C -0.234 4.234 11 C 0.185 3.815 12 O -0.146 6.146 13 C -0.395 4.395 14 H 0.092 0.908 15 C 0.045 3.955 16 N -0.847 5.847 17 Si 0.939 3.061 18 H -0.273 1.273 19 H -0.277 1.277 20 H -0.267 1.267 21 C -0.092 4.092 22 C 0.272 3.728 23 N -0.424 5.424 24 C -0.031 4.031 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.159 0.841 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.132 0.868 33 H 0.270 0.730 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.925 -4.130 6.366 9.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.166 4.166 3 C -0.016 4.016 4 N -0.149 5.149 5 C 0.118 3.882 6 C -0.158 4.158 7 C -0.063 4.063 8 C -0.236 4.236 9 C -0.076 4.076 10 C -0.253 4.253 11 C 0.127 3.873 12 O -0.046 6.046 13 C -0.471 4.471 14 H 0.110 0.890 15 C -0.161 4.161 16 N -0.479 5.479 17 Si 0.764 3.236 18 H -0.199 1.199 19 H -0.202 1.202 20 H -0.191 1.191 21 C -0.098 4.098 22 C -0.044 4.044 23 N -0.100 5.100 24 C -0.058 4.058 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.176 0.824 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.150 0.850 33 H 0.080 0.920 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.002 -4.606 6.178 8.683 hybrid contribution -0.072 0.125 -0.765 0.778 sum -4.074 -4.481 5.413 8.123 Atomic orbital electron populations 1.20654 0.89990 1.02794 1.02607 1.20774 0.97558 0.93656 1.04593 1.22949 0.89915 0.97419 0.91330 1.68070 1.07095 1.29164 1.10557 1.19742 0.93240 0.86142 0.89035 1.17421 0.88812 1.06588 1.02938 1.20632 0.93934 0.95897 0.95852 1.20457 0.93720 1.05837 1.03584 1.20879 0.98711 0.94300 0.93683 1.21147 0.93574 1.06415 1.04188 1.19189 0.90079 0.89559 0.88440 1.84028 1.33857 1.52434 1.34313 1.21398 0.92707 1.24552 1.08484 0.89020 1.25284 0.96034 0.96582 0.98248 1.70054 1.07407 1.34782 1.35700 0.85739 0.79197 0.78783 0.79904 1.19877 1.20160 1.19106 1.16994 0.92374 0.88398 1.11991 1.25273 0.93169 0.92405 0.93527 1.81163 1.08053 1.11501 1.09282 1.21286 0.91284 0.98713 0.94564 0.90946 0.91640 0.91146 0.82410 0.87282 0.87208 0.87123 0.85049 0.91984 0.84464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.94 10.03 36.01 0.36 -0.58 16 2 C -0.16 -2.18 5.89 -104.48 -0.62 -2.79 16 3 C 0.14 2.35 10.83 -17.51 -0.19 2.16 16 4 N -0.44 -9.20 9.70 -9.50 -0.09 -9.29 16 5 C 0.26 5.24 6.04 -82.59 -0.50 4.74 16 6 C -0.16 -3.37 5.24 -104.75 -0.55 -3.92 16 7 C -0.04 -0.84 8.43 -39.24 -0.33 -1.17 16 8 C -0.22 -3.91 10.03 -39.60 -0.40 -4.30 16 9 C -0.06 -1.06 10.03 -39.54 -0.40 -1.45 16 10 C -0.23 -5.08 9.13 -39.44 -0.36 -5.44 16 11 C 0.18 4.48 6.63 -38.68 -0.26 4.22 16 12 O -0.15 -4.05 8.76 0.53 0.00 -4.04 16 13 C -0.40 -10.77 9.44 30.89 0.29 -10.47 16 14 H 0.09 2.32 5.30 -52.49 -0.28 2.04 16 15 C 0.04 1.19 5.49 -17.52 -0.10 1.09 16 16 N -0.85 -23.85 13.67 55.48 0.76 -23.09 16 17 Si 0.94 20.01 29.55 -169.99 -5.02 14.99 16 18 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 19 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 21 C -0.09 -1.58 5.75 -106.38 -0.61 -2.19 16 22 C 0.27 4.79 12.68 -22.47 -0.28 4.51 16 23 N -0.42 -7.87 18.54 41.84 0.78 -7.10 16 24 C -0.03 -0.42 9.57 -38.89 -0.37 -0.79 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 27 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 28 H 0.16 2.19 8.06 -52.49 -0.42 1.76 16 29 H 0.11 1.88 7.27 -52.49 -0.38 1.50 16 30 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 31 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.13 2.80 5.71 -52.49 -0.30 2.50 16 33 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 34 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 309.90 15.07 4.67 4.67 Total: -1.00 -31.35 309.90 -6.26 -37.61 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -3.05 Total: 2.65 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -4.31 Total: -16.41 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 1.44 Total: -39.47 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: 0.00 Total: -4.04 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.35 -6.26 -37.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243580799.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.870 kcal (2) G-P(sol) polarization free energy of solvation -31.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds