Wall clock time and date at job start Tue Mar 31 2020 01:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38474 * 120.23351 * 2 1 4 4 N 1.31716 * 121.25075 * 180.02562 * 3 2 1 5 5 C 1.32646 * 121.76513 * 359.97438 * 4 3 2 6 6 C 1.47960 * 119.84747 * 180.02562 * 5 4 3 7 7 C 1.39462 * 120.17651 * 130.10193 * 6 5 4 8 8 C 1.37935 * 119.93138 * 180.02562 * 7 6 5 9 9 C 1.38500 * 120.29480 * 0.02562 * 8 7 6 10 10 C 1.38083 * 120.35777 * 0.02562 * 9 8 7 11 11 C 1.38775 * 120.06218 * 359.68288 * 10 9 8 12 12 O 1.35609 * 120.15007 * 180.29943 * 11 10 9 13 13 C 1.34812 * 116.99659 * 5.75093 * 12 11 10 14 14 H 1.07997 * 120.00032 * 5.46392 * 13 12 11 15 15 C 1.38671 * 119.99858 * 185.45222 * 13 12 11 16 16 N 1.31533 * 120.00065 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99920 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47016 * 90.00188 * 17 15 13 19 19 H 1.48497 * 109.47279 * 210.00450 * 17 15 13 20 20 H 1.48501 * 109.46959 * 330.00645 * 17 15 13 21 21 C 1.40743 * 120.30725 * 0.02562 * 5 4 3 22 22 C 1.43204 * 120.62226 * 179.97438 * 21 5 4 23 23 N 4.80334 * 136.32383 * 180.02562 * 2 1 3 24 24 C 1.38374 * 120.22292 * 179.72620 * 2 1 3 25 25 H 1.09001 * 109.47390 * 89.99694 * 1 2 3 26 26 H 1.08996 * 109.47461 * 210.00134 * 1 2 3 27 27 H 1.09000 * 109.46633 * 329.99825 * 1 2 3 28 28 H 1.07998 * 119.37511 * 359.97438 * 3 2 1 29 29 H 1.07999 * 120.03299 * 0.02562 * 7 6 5 30 30 H 1.07996 * 119.84747 * 180.02562 * 8 7 6 31 31 H 1.07999 * 119.81443 * 179.97438 * 9 8 7 32 32 H 1.08001 * 119.96258 * 179.97438 * 10 9 8 33 33 H 0.97011 * 120.00186 * 179.97438 * 16 15 13 34 34 H 1.08003 * 120.81782 * 359.97016 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2043 1.1964 0.0000 4 7 3.5212 1.2198 -0.0005 5 6 4.2394 0.1046 -0.0005 6 6 5.7171 0.1803 -0.0005 7 6 6.4570 -0.5594 0.9216 8 6 7.8343 -0.4845 0.9175 9 6 8.4873 0.3230 0.0012 10 6 7.7667 1.0614 -0.9165 11 6 6.3807 0.9926 -0.9295 12 8 5.6715 1.7123 -1.8340 13 6 6.3740 2.3819 -2.7696 14 1 7.4454 2.2602 -2.8302 15 6 5.7210 3.2268 -3.6542 16 7 4.4161 3.3753 -3.5802 17 14 6.6944 4.1542 -4.9511 18 1 6.7804 3.3340 -6.1861 19 1 6.0142 5.4385 -5.2563 20 1 8.0624 4.4273 -4.4420 21 6 3.6024 -1.1505 -0.0006 22 6 4.3712 -2.3587 -0.0011 23 7 4.9811 -3.3171 -0.0015 24 6 2.2036 -1.1956 0.0057 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3632 0.8900 0.5139 28 1 1.6579 2.1280 -0.0004 29 1 5.9520 -1.1901 1.6383 30 1 8.4059 -1.0583 1.6319 31 1 9.5660 0.3761 0.0051 32 1 8.2825 1.6893 -1.6279 33 1 3.9593 3.9666 -4.1988 34 1 1.6806 -2.1406 0.0107 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243580799.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:04 Heat of formation + Delta-G solvation = 42.584089 kcal Electronic energy + Delta-G solvation = -20617.918769 eV Core-core repulsion = 17480.885448 eV Total energy + Delta-G solvation = -3137.033321 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.60036 -40.41494 -38.20610 -37.61271 -34.92102 -34.25862 -33.49399 -31.60838 -30.62488 -27.77422 -27.26324 -25.56867 -24.29018 -23.21430 -22.27112 -19.84815 -19.43278 -18.94343 -17.80167 -17.48879 -16.43732 -16.35271 -15.76935 -15.55746 -15.35594 -15.24846 -14.79531 -14.41624 -14.34335 -14.16571 -14.09585 -13.88185 -13.54420 -13.43557 -13.28838 -13.00857 -12.75842 -12.57820 -12.37258 -12.31912 -12.12632 -11.30249 -10.79408 -10.75019 -10.41773 -10.15743 -9.48248 -8.91253 -8.43948 -6.10284 -0.48948 0.08747 0.61044 0.73496 1.35635 1.44235 1.51730 1.54683 1.93652 2.17298 2.69070 2.79123 2.93356 3.15837 3.29675 3.43120 3.80215 3.88329 4.02350 4.09997 4.19671 4.28039 4.39021 4.57651 4.62175 4.81766 4.90231 4.96135 4.98106 5.09953 5.16238 5.26448 5.27496 5.52209 5.59792 5.67496 5.71206 6.00752 6.12401 6.34962 6.98833 7.08047 7.79004 8.76703 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.013282 B = 0.007117 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.596804 B = 3933.088349 C = 5532.872387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.139 4.139 3 C 0.123 3.877 4 N -0.490 5.490 5 C 0.221 3.779 6 C -0.160 4.160 7 C -0.052 4.052 8 C -0.198 4.198 9 C -0.054 4.054 10 C -0.250 4.250 11 C 0.146 3.854 12 O -0.192 6.192 13 C -0.421 4.421 14 H 0.098 0.902 15 C -0.012 4.012 16 N -0.900 5.900 17 Si 1.012 2.988 18 H -0.266 1.266 19 H -0.270 1.270 20 H -0.255 1.255 21 C -0.095 4.095 22 C 0.283 3.717 23 N -0.441 5.441 24 C -0.022 4.022 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.173 0.827 29 H 0.129 0.871 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.126 0.874 33 H 0.272 0.728 34 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.161 -5.724 7.453 10.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.141 4.141 3 C -0.037 4.037 4 N -0.197 5.197 5 C 0.082 3.918 6 C -0.162 4.162 7 C -0.071 4.071 8 C -0.217 4.217 9 C -0.072 4.072 10 C -0.270 4.270 11 C 0.093 3.907 12 O -0.096 6.096 13 C -0.497 4.497 14 H 0.115 0.885 15 C -0.212 4.212 16 N -0.536 5.536 17 Si 0.832 3.168 18 H -0.191 1.191 19 H -0.195 1.195 20 H -0.179 1.179 21 C -0.101 4.101 22 C -0.032 4.032 23 N -0.117 5.117 24 C -0.050 4.050 25 H 0.099 0.901 26 H 0.111 0.889 27 H 0.104 0.896 28 H 0.190 0.810 29 H 0.146 0.854 30 H 0.168 0.832 31 H 0.168 0.832 32 H 0.143 0.857 33 H 0.081 0.919 34 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -4.216 -6.236 7.310 10.492 hybrid contribution -0.039 0.418 -0.835 0.935 sum -4.255 -5.818 6.475 9.689 Atomic orbital electron populations 1.20794 0.86279 1.05013 1.03745 1.21218 0.99871 0.92163 1.00891 1.23392 0.88944 0.99643 0.91681 1.67928 1.09370 1.30330 1.12073 1.19732 0.92853 0.87367 0.91823 1.17912 0.90434 1.05643 1.02241 1.20962 0.94713 0.95878 0.95585 1.21019 0.93519 1.04222 1.02915 1.21289 1.00630 0.92969 0.92326 1.21317 0.93005 1.07347 1.05282 1.19802 0.91446 0.90255 0.89233 1.84011 1.34824 1.54781 1.35960 1.21827 0.93250 1.25204 1.09430 0.88464 1.26444 0.97135 0.97274 1.00337 1.70192 1.09258 1.36659 1.37519 0.84680 0.78004 0.77327 0.76793 1.19142 1.19471 1.17870 1.17060 0.93886 0.86970 1.12178 1.25301 0.92793 0.92178 0.92950 1.81165 1.08392 1.12120 1.10004 1.21793 0.89814 1.00700 0.92663 0.90066 0.88854 0.89629 0.80982 0.85364 0.83213 0.83163 0.85678 0.91937 0.80236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.47 10.03 71.24 0.71 -0.76 16 2 C -0.14 -3.42 5.89 -19.77 -0.12 -3.54 16 3 C 0.12 4.04 10.83 84.77 0.92 4.95 16 4 N -0.49 -21.27 9.70 -183.98 -1.78 -23.06 16 5 C 0.22 9.26 6.04 42.21 0.26 9.51 16 6 C -0.16 -7.15 5.24 -19.95 -0.10 -7.25 16 7 C -0.05 -1.95 8.43 22.49 0.19 -1.76 16 8 C -0.20 -6.61 10.03 22.26 0.22 -6.38 16 9 C -0.05 -1.90 10.03 22.30 0.22 -1.68 16 10 C -0.25 -11.11 9.13 22.36 0.20 -10.90 16 11 C 0.15 7.44 6.63 22.85 0.15 7.59 16 12 O -0.19 -11.38 8.76 -21.01 -0.18 -11.57 16 13 C -0.42 -24.31 9.44 67.92 0.64 -23.67 16 14 H 0.10 5.20 5.30 -2.91 -0.02 5.18 16 15 C -0.01 -0.68 5.49 84.84 0.47 -0.21 16 16 N -0.90 -53.63 13.67 21.62 0.30 -53.34 16 17 Si 1.01 42.47 29.55 68.60 2.03 44.50 16 18 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 19 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 20 H -0.25 -10.02 7.11 99.48 0.71 -9.32 16 21 C -0.10 -3.22 5.75 -21.00 -0.12 -3.34 16 22 C 0.28 9.66 12.68 88.33 1.12 10.78 16 23 N -0.44 -15.74 18.54 19.01 0.35 -15.39 16 24 C -0.02 -0.56 9.57 22.72 0.22 -0.35 16 25 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.09 0.91 8.09 -2.39 -0.02 0.89 16 27 H 0.08 1.04 8.09 -2.39 -0.02 1.02 16 28 H 0.17 4.86 8.06 -2.91 -0.02 4.84 16 29 H 0.13 4.22 7.27 -2.91 -0.02 4.19 16 30 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 31 H 0.15 4.06 8.06 -2.91 -0.02 4.03 16 32 H 0.13 5.56 5.71 -2.91 -0.02 5.55 16 33 H 0.27 14.84 8.31 -92.70 -0.77 14.07 16 34 H 0.18 2.96 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -74.53 309.90 6.83 -67.70 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 1.15 Total: 18.16 kcal Atomic # 6 Polarization: -31.99 SS G_CDS: 4.98 Total: -27.01 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -1.14 Total: -91.78 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -0.18 Total: -11.57 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -74.53 6.83 -67.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243580799.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.279 kcal (2) G-P(sol) polarization free energy of solvation -74.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds