Wall clock time and date at job start Tue Mar 31 2020 01:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38025 * 120.38736 * 2 1 4 4 C 1.40241 * 118.38201 * 180.28081 * 3 2 1 5 5 C 1.43200 * 120.45607 * 179.75004 * 4 3 2 6 6 N 4.80016 * 136.43208 * 359.72121 * 2 1 3 7 7 C 1.39741 * 119.08177 * 359.73015 * 4 3 2 8 8 N 1.31485 * 120.68208 * 359.97438 * 7 4 3 9 9 C 1.32850 * 121.77054 * 0.02562 * 8 7 4 10 10 C 1.48057 * 119.57342 * 179.97438 * 9 8 7 11 11 C 1.39422 * 120.16991 * 129.89562 * 10 9 8 12 12 C 1.37948 * 119.93152 * 179.97438 * 11 10 9 13 13 C 1.38495 * 120.29239 * 0.02562 * 12 11 10 14 14 C 1.38083 * 120.35152 * 359.97438 * 13 12 11 15 15 C 1.38786 * 120.05628 * 0.02562 * 14 13 12 16 16 O 1.35614 * 120.14137 * 180.02562 * 15 14 13 17 17 C 1.34804 * 117.00126 * 5.76411 * 16 15 14 18 18 H 1.08002 * 120.00421 * 5.45922 * 17 16 15 19 19 C 1.38681 * 120.00069 * 185.45268 * 17 16 15 20 20 N 1.31541 * 119.99614 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99907 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47631 * 60.00372 * 21 19 17 23 23 H 1.48505 * 109.47150 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47402 * 299.99902 * 21 19 17 25 25 H 1.08992 * 109.47305 * 265.18758 * 1 2 3 26 26 H 1.08998 * 109.46885 * 25.18755 * 1 2 3 27 27 H 1.09003 * 109.47084 * 145.18122 * 1 2 3 28 28 H 1.07992 * 120.80642 * 0.02562 * 3 2 1 29 29 H 1.07998 * 119.65829 * 180.02562 * 7 4 3 30 30 H 1.07991 * 120.03536 * 359.95613 * 11 10 9 31 31 H 1.08000 * 119.85368 * 180.02562 * 12 11 10 32 32 H 1.07997 * 119.82505 * 179.72119 * 13 12 11 33 33 H 1.07998 * 119.96863 * 179.97438 * 14 13 12 34 34 H 0.96999 * 119.99675 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2052 1.1906 0.0000 4 6 3.6068 1.1416 -0.0060 5 6 4.3754 2.3498 -0.0117 6 7 4.9850 3.3083 -0.0161 7 6 4.2429 -0.1027 -0.0061 8 7 3.5414 -1.2148 0.0000 9 6 2.2130 -1.2039 0.0058 10 6 1.4717 -2.4855 0.0119 11 6 0.4558 -2.7029 0.9417 12 6 -0.2320 -3.8987 0.9426 13 6 0.0822 -4.8861 0.0237 14 6 1.0862 -4.6834 -0.9024 15 6 1.7875 -3.4859 -0.9163 16 8 2.7736 -3.2848 -1.8254 17 6 2.9443 -4.2372 -2.7640 18 1 2.2554 -5.0669 -2.8230 19 6 4.0044 -4.1517 -3.6539 20 7 4.8437 -3.1414 -3.5818 21 14 4.2405 -5.4712 -4.9549 22 1 3.0415 -5.5243 -5.8295 23 1 5.4372 -5.1505 -5.7737 24 1 4.4310 -6.7881 -4.2955 25 1 -0.3633 -0.0862 1.0240 26 1 -0.3633 0.9300 -0.4374 27 1 -0.3633 -0.8437 -0.5868 28 1 1.6849 2.1369 0.0004 29 1 5.3217 -0.1513 -0.0103 30 1 0.2078 -1.9362 1.6605 31 1 -1.0191 -4.0656 1.6631 32 1 -0.4581 -5.8211 0.0341 33 1 1.3264 -5.4578 -1.6158 34 1 5.5850 -3.0814 -4.2045 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243580880.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:08 Heat of formation + Delta-G solvation = 61.431213 kcal Electronic energy + Delta-G solvation = -20536.469397 eV Core-core repulsion = 17400.253349 eV Total energy + Delta-G solvation = -3136.216049 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.25088 -38.82590 -36.63932 -36.28207 -33.53146 -32.67087 -32.29477 -29.65780 -28.98047 -27.05501 -25.46472 -24.25346 -22.46150 -21.61111 -20.98881 -18.20246 -18.04823 -17.39512 -16.53607 -15.90530 -14.81128 -14.73073 -14.22940 -14.12143 -13.81039 -13.62673 -13.61041 -13.23149 -13.06510 -12.75179 -12.66932 -12.56516 -12.28895 -12.25141 -11.77494 -11.63446 -11.34757 -10.95663 -10.82729 -10.76057 -10.50653 -9.54074 -9.49180 -9.07055 -8.91026 -8.74473 -8.02078 -7.26524 -6.51875 -4.09180 0.75825 1.52973 2.01890 2.30260 2.76176 3.09269 3.10476 3.13099 3.20231 3.89912 3.99159 4.15047 4.45857 4.69222 4.92000 4.96275 5.03791 5.09239 5.26619 5.34217 5.52897 5.64751 5.80625 5.82245 5.82711 6.00788 6.11063 6.15260 6.30880 6.36040 6.56527 6.66225 6.83807 6.97671 7.11011 7.25628 7.28064 7.57588 7.67848 7.89521 8.39648 8.91659 9.60992 10.63721 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.012754 B = 0.006833 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.809416 B = 4096.661462 C = 5953.441136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.142 4.142 3 C -0.030 4.030 4 C -0.111 4.111 5 C 0.272 3.728 6 N -0.434 5.434 7 C 0.164 3.836 8 N -0.445 5.445 9 C 0.240 3.760 10 C -0.149 4.149 11 C -0.044 4.044 12 C -0.222 4.222 13 C -0.059 4.059 14 C -0.235 4.235 15 C 0.181 3.819 16 O -0.146 6.146 17 C -0.396 4.396 18 H 0.092 0.908 19 C 0.045 3.955 20 N -0.845 5.845 21 Si 0.939 3.061 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.269 1.269 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.137 0.863 29 H 0.160 0.840 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.130 0.870 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.479 2.212 6.414 10.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.144 4.144 3 C -0.058 4.058 4 C -0.117 4.117 5 C -0.043 4.043 6 N -0.110 5.110 7 C 0.001 3.999 8 N -0.151 5.151 9 C 0.103 3.897 10 C -0.151 4.151 11 C -0.063 4.063 12 C -0.241 4.241 13 C -0.077 4.077 14 C -0.254 4.254 15 C 0.124 3.876 16 O -0.046 6.046 17 C -0.472 4.472 18 H 0.110 0.890 19 C -0.162 4.162 20 N -0.478 5.478 21 Si 0.764 3.236 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.194 1.194 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.155 0.845 29 H 0.177 0.823 30 H 0.134 0.866 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.148 0.852 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.672 3.169 6.209 9.650 hybrid contribution -0.388 -0.340 -0.767 0.925 sum -7.060 2.829 5.442 9.352 Atomic orbital electron populations 1.20791 0.89794 1.03217 1.02474 1.20717 0.97704 0.92470 1.03521 1.21265 0.91513 0.98455 0.94540 1.17052 0.92642 0.88905 1.13111 1.25504 0.93200 0.92607 0.92995 1.81202 1.08791 1.10893 1.10128 1.22913 1.00473 0.85471 0.90995 1.68050 1.07189 1.29095 1.10745 1.19878 0.88725 0.91979 0.89083 1.17422 1.02220 0.92872 1.02627 1.20685 0.93145 0.96726 0.95725 1.20471 1.04720 0.95384 1.03532 1.20872 0.95382 0.97724 0.93759 1.21143 1.01287 0.98856 1.04149 1.19255 0.88329 0.91457 0.88597 1.84033 1.43003 1.43584 1.33955 1.21343 1.13004 1.04701 1.08146 0.89048 1.25299 0.94666 0.97924 0.98302 1.70044 1.13719 1.28418 1.35611 0.85810 0.78387 0.79818 0.79626 1.19459 1.20241 1.19397 0.91028 0.91805 0.90189 0.84477 0.82267 0.86636 0.87237 0.87293 0.85236 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 8.43 36.01 0.30 -0.95 16 2 C -0.14 -2.14 5.87 -104.20 -0.61 -2.75 16 3 C -0.03 -0.41 9.55 -38.91 -0.37 -0.78 16 4 C -0.11 -1.67 5.75 -106.66 -0.61 -2.28 16 5 C 0.27 4.11 15.36 -22.47 -0.35 3.77 16 6 N -0.43 -7.18 18.54 41.84 0.78 -6.40 16 7 C 0.16 2.83 10.91 -17.14 -0.19 2.64 16 8 N -0.44 -9.14 9.67 -9.46 -0.09 -9.23 16 9 C 0.24 4.54 6.01 -82.91 -0.50 4.05 16 10 C -0.15 -2.92 4.86 -104.74 -0.51 -3.43 16 11 C -0.04 -0.70 8.00 -39.25 -0.31 -1.01 16 12 C -0.22 -3.40 10.03 -39.59 -0.40 -3.80 16 13 C -0.06 -0.98 10.03 -39.54 -0.40 -1.37 16 14 C -0.24 -4.75 9.13 -39.44 -0.36 -5.11 16 15 C 0.18 4.12 6.63 -38.69 -0.26 3.86 16 16 O -0.15 -3.91 8.75 0.54 0.00 -3.91 16 17 C -0.40 -10.52 9.44 30.90 0.29 -10.23 16 18 H 0.09 2.23 5.30 -52.49 -0.28 1.95 16 19 C 0.04 1.17 5.49 -17.51 -0.10 1.08 16 20 N -0.85 -23.82 13.67 55.48 0.76 -23.06 16 21 Si 0.94 19.77 29.55 -169.99 -5.02 14.75 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 25 H 0.07 0.70 7.20 -51.93 -0.37 0.33 16 26 H 0.06 0.62 8.06 -51.93 -0.42 0.20 16 27 H 0.08 1.07 6.82 -51.93 -0.35 0.71 16 28 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.16 2.45 8.06 -52.49 -0.42 2.02 16 30 H 0.12 1.51 6.71 -52.49 -0.35 1.16 16 31 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.13 2.62 5.71 -52.49 -0.30 2.32 16 34 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 307.36 15.07 4.63 4.63 Total: -1.00 -30.44 307.36 -6.21 -36.65 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -2.90 Total: 2.90 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -4.36 Total: -16.33 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 1.44 Total: -38.69 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: 0.00 Total: -3.91 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.44 -6.21 -36.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243580880.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.083 kcal (2) G-P(sol) polarization free energy of solvation -30.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds