Wall clock time and date at job start Tue Mar 31 2020 01:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38025 * 120.38736 * 2 1 4 4 C 1.40241 * 118.38201 * 180.28081 * 3 2 1 5 5 C 1.43200 * 120.45607 * 179.75004 * 4 3 2 6 6 N 4.80016 * 136.43208 * 359.72121 * 2 1 3 7 7 C 1.39741 * 119.08177 * 359.73015 * 4 3 2 8 8 N 1.31485 * 120.68208 * 359.97438 * 7 4 3 9 9 C 1.32850 * 121.77054 * 0.02562 * 8 7 4 10 10 C 1.48057 * 119.57342 * 179.97438 * 9 8 7 11 11 C 1.39422 * 120.16991 * 129.89562 * 10 9 8 12 12 C 1.37948 * 119.93152 * 179.97438 * 11 10 9 13 13 C 1.38495 * 120.29239 * 0.02562 * 12 11 10 14 14 C 1.38083 * 120.35152 * 359.97438 * 13 12 11 15 15 C 1.38786 * 120.05628 * 0.02562 * 14 13 12 16 16 O 1.35614 * 120.14137 * 180.02562 * 15 14 13 17 17 C 1.34804 * 117.00126 * 5.76411 * 16 15 14 18 18 H 1.08002 * 120.00421 * 5.45922 * 17 16 15 19 19 C 1.38681 * 120.00069 * 185.45268 * 17 16 15 20 20 N 1.31541 * 119.99614 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99907 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47631 * 60.00372 * 21 19 17 23 23 H 1.48505 * 109.47150 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47402 * 299.99902 * 21 19 17 25 25 H 1.08992 * 109.47305 * 265.18758 * 1 2 3 26 26 H 1.08998 * 109.46885 * 25.18755 * 1 2 3 27 27 H 1.09003 * 109.47084 * 145.18122 * 1 2 3 28 28 H 1.07992 * 120.80642 * 0.02562 * 3 2 1 29 29 H 1.07998 * 119.65829 * 180.02562 * 7 4 3 30 30 H 1.07991 * 120.03536 * 359.95613 * 11 10 9 31 31 H 1.08000 * 119.85368 * 180.02562 * 12 11 10 32 32 H 1.07997 * 119.82505 * 179.72119 * 13 12 11 33 33 H 1.07998 * 119.96863 * 179.97438 * 14 13 12 34 34 H 0.96999 * 119.99675 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2052 1.1906 0.0000 4 6 3.6068 1.1416 -0.0060 5 6 4.3754 2.3498 -0.0117 6 7 4.9850 3.3083 -0.0161 7 6 4.2429 -0.1027 -0.0061 8 7 3.5414 -1.2148 0.0000 9 6 2.2130 -1.2039 0.0058 10 6 1.4717 -2.4855 0.0119 11 6 0.4558 -2.7029 0.9417 12 6 -0.2320 -3.8987 0.9426 13 6 0.0822 -4.8861 0.0237 14 6 1.0862 -4.6834 -0.9024 15 6 1.7875 -3.4859 -0.9163 16 8 2.7736 -3.2848 -1.8254 17 6 2.9443 -4.2372 -2.7640 18 1 2.2554 -5.0669 -2.8230 19 6 4.0044 -4.1517 -3.6539 20 7 4.8437 -3.1414 -3.5818 21 14 4.2405 -5.4712 -4.9549 22 1 3.0415 -5.5243 -5.8295 23 1 5.4372 -5.1505 -5.7737 24 1 4.4310 -6.7881 -4.2955 25 1 -0.3633 -0.0862 1.0240 26 1 -0.3633 0.9300 -0.4374 27 1 -0.3633 -0.8437 -0.5868 28 1 1.6849 2.1369 0.0004 29 1 5.3217 -0.1513 -0.0103 30 1 0.2078 -1.9362 1.6605 31 1 -1.0191 -4.0656 1.6631 32 1 -0.4581 -5.8211 0.0341 33 1 1.3264 -5.4578 -1.6158 34 1 5.5850 -3.0814 -4.2045 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243580880.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:06 Heat of formation + Delta-G solvation = 43.410217 kcal Electronic energy + Delta-G solvation = -20537.250847 eV Core-core repulsion = 17400.253349 eV Total energy + Delta-G solvation = -3136.997498 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.58676 -40.34636 -38.13062 -37.64556 -34.75595 -34.28956 -33.84882 -31.02430 -30.45135 -28.18046 -27.31452 -25.56992 -23.72967 -23.11846 -22.38476 -19.76725 -19.42988 -18.95418 -17.85027 -17.37540 -16.36002 -16.27673 -15.61329 -15.53086 -15.32536 -15.13473 -14.82634 -14.51222 -14.33297 -14.11536 -14.00457 -13.91460 -13.50319 -13.42683 -13.35486 -13.00777 -12.76001 -12.48060 -12.26671 -12.15658 -12.09493 -11.21154 -10.76108 -10.73614 -10.38586 -10.05309 -9.38678 -8.82176 -8.41150 -6.06925 -0.53612 0.32595 0.61423 0.84473 1.35774 1.46273 1.50621 1.50663 1.92260 2.19102 2.70682 2.82627 2.95297 3.23182 3.41658 3.55512 3.73361 3.83909 4.03903 4.19914 4.28339 4.35587 4.56028 4.64982 4.74309 4.77998 4.91463 4.99439 5.10257 5.15648 5.19552 5.28460 5.33954 5.60124 5.69892 5.77631 5.82383 6.04888 6.27810 6.32513 7.02550 7.09099 7.86479 8.79529 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.012754 B = 0.006833 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.809416 B = 4096.661462 C = 5953.441136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.132 4.132 3 C -0.018 4.018 4 C -0.098 4.098 5 C 0.291 3.709 6 N -0.453 5.453 7 C 0.143 3.857 8 N -0.493 5.493 9 C 0.204 3.796 10 C -0.152 4.152 11 C -0.040 4.040 12 C -0.195 4.195 13 C -0.058 4.058 14 C -0.255 4.255 15 C 0.140 3.860 16 O -0.199 6.199 17 C -0.415 4.415 18 H 0.099 0.901 19 C -0.017 4.017 20 N -0.906 5.906 21 Si 1.011 2.989 22 H -0.258 1.258 23 H -0.276 1.276 24 H -0.259 1.259 25 H 0.102 0.898 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.182 0.818 29 H 0.162 0.838 30 H 0.155 0.845 31 H 0.157 0.843 32 H 0.145 0.855 33 H 0.116 0.884 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.942 2.773 8.295 14.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.134 4.134 3 C -0.045 4.045 4 C -0.104 4.104 5 C -0.024 4.024 6 N -0.129 5.129 7 C -0.019 4.019 8 N -0.200 5.200 9 C 0.068 3.932 10 C -0.154 4.154 11 C -0.059 4.059 12 C -0.213 4.213 13 C -0.076 4.076 14 C -0.275 4.275 15 C 0.087 3.913 16 O -0.104 6.104 17 C -0.491 4.491 18 H 0.116 0.884 19 C -0.215 4.215 20 N -0.543 5.543 21 Si 0.831 3.169 22 H -0.182 1.182 23 H -0.201 1.201 24 H -0.184 1.184 25 H 0.120 0.880 26 H 0.110 0.890 27 H 0.081 0.919 28 H 0.199 0.801 29 H 0.179 0.821 30 H 0.172 0.828 31 H 0.175 0.825 32 H 0.162 0.838 33 H 0.134 0.866 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.195 3.716 8.139 13.565 hybrid contribution 0.414 -0.424 -1.020 1.180 sum -9.781 3.292 7.119 12.537 Atomic orbital electron populations 1.20903 0.86936 1.04029 1.04267 1.21055 0.99572 0.91296 1.01512 1.21724 0.90638 0.99782 0.92338 1.17016 0.93554 0.87786 1.12050 1.25318 0.92610 0.92122 0.92316 1.81230 1.09227 1.11716 1.10745 1.23005 1.00792 0.85950 0.92131 1.67910 1.08809 1.30997 1.12267 1.20136 0.88582 0.93305 0.91157 1.17931 1.02725 0.92657 1.02100 1.21168 0.91632 0.98118 0.94978 1.21099 1.03963 0.93833 1.02393 1.21294 0.94073 0.99666 0.92567 1.21267 1.02768 0.97993 1.05439 1.19953 0.88399 0.93498 0.89497 1.84015 1.45880 1.44565 1.35890 1.21752 1.13386 1.05021 1.08926 0.88401 1.26443 0.94253 1.00264 1.00590 1.70205 1.15169 1.31290 1.37611 0.84758 0.78488 0.76959 0.76725 1.18236 1.20066 1.18363 0.88014 0.88988 0.91904 0.80100 0.82082 0.82763 0.82511 0.83769 0.86571 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.03 8.43 71.24 0.60 -1.43 16 2 C -0.13 -3.69 5.87 -19.59 -0.12 -3.80 16 3 C -0.02 -0.43 9.55 22.71 0.22 -0.21 16 4 C -0.10 -2.86 5.75 -21.18 -0.12 -2.98 16 5 C 0.29 8.47 15.36 88.33 1.36 9.82 16 6 N -0.45 -14.48 18.54 19.00 0.35 -14.13 16 7 C 0.14 5.15 10.91 85.11 0.93 6.08 16 8 N -0.49 -21.27 9.67 -183.83 -1.78 -23.05 16 9 C 0.20 7.77 6.01 41.92 0.25 8.02 16 10 C -0.15 -5.92 4.86 -19.94 -0.10 -6.02 16 11 C -0.04 -1.15 8.00 22.49 0.18 -0.97 16 12 C -0.19 -5.03 10.03 22.26 0.22 -4.80 16 13 C -0.06 -1.76 10.03 22.29 0.22 -1.54 16 14 C -0.26 -10.47 9.13 22.36 0.20 -10.27 16 15 C 0.14 6.61 6.63 22.85 0.15 6.76 16 16 O -0.20 -11.52 8.75 -20.98 -0.18 -11.70 16 17 C -0.41 -23.58 9.44 67.93 0.64 -22.94 16 18 H 0.10 5.11 5.30 -2.91 -0.02 5.10 16 19 C -0.02 -0.93 5.49 84.84 0.47 -0.46 16 20 N -0.91 -55.00 13.67 21.62 0.30 -54.70 16 21 Si 1.01 42.66 29.55 68.60 2.03 44.68 16 22 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 23 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 24 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 25 H 0.10 1.40 7.20 -2.39 -0.02 1.38 16 26 H 0.09 1.31 8.06 -2.39 -0.02 1.29 16 27 H 0.06 1.48 6.82 -2.39 -0.02 1.46 16 28 H 0.18 2.82 8.06 -2.91 -0.02 2.79 16 29 H 0.16 5.39 8.06 -2.91 -0.02 5.36 16 30 H 0.15 3.18 6.71 -2.92 -0.02 3.16 16 31 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 32 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 33 H 0.12 4.93 5.71 -2.91 -0.02 4.92 16 34 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -74.51 307.36 6.98 -67.54 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 1.15 Total: 16.10 kcal Atomic # 6 Polarization: -29.85 SS G_CDS: 5.11 Total: -24.74 kcal Atomic # 7 Polarization: -90.75 SS G_CDS: -1.13 Total: -91.88 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -0.18 Total: -11.70 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -74.51 6.98 -67.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243580880.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.948 kcal (2) G-P(sol) polarization free energy of solvation -74.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds