Wall clock time and date at job start Tue Mar 31 2020 01:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39710 * 120.55105 * 2 1 4 4 C 1.43202 * 120.88416 * 0.02562 * 3 2 1 5 5 N 3.49714 * 81.48694 * 0.02562 * 2 1 3 6 6 C 1.40039 * 118.23520 * 180.26636 * 3 2 1 7 7 C 1.38127 * 119.21051 * 359.74867 * 6 3 2 8 8 N 1.31731 * 121.04733 * 0.02562 * 7 6 3 9 9 C 1.32715 * 121.94574 * 0.02562 * 8 7 6 10 10 C 1.48223 * 119.66702 * 179.97438 * 9 8 7 11 11 C 1.39327 * 120.16526 * 123.16330 * 10 9 8 12 12 C 1.37985 * 119.94482 * 180.02562 * 11 10 9 13 13 C 1.38464 * 120.27615 * 359.97438 * 12 11 10 14 14 C 1.38093 * 120.33222 * 0.02562 * 13 12 11 15 15 C 1.38774 * 120.05184 * 359.97438 * 14 13 12 16 16 O 1.35638 * 120.13754 * 180.02562 * 15 14 13 17 17 C 1.34813 * 117.00275 * 5.89662 * 16 15 14 18 18 H 1.08001 * 119.99714 * 5.30315 * 17 16 15 19 19 C 1.38661 * 120.00004 * 185.30202 * 17 16 15 20 20 N 1.31547 * 119.99957 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99762 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47337 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47370 * 119.99828 * 21 19 17 24 24 H 1.48500 * 109.47192 * 239.99926 * 21 19 17 25 25 H 1.09007 * 109.47167 * 265.52999 * 1 2 3 26 26 H 1.08995 * 109.47343 * 25.53642 * 1 2 3 27 27 H 1.08999 * 109.47061 * 145.53705 * 1 2 3 28 28 H 1.07994 * 120.39714 * 179.77142 * 6 3 2 29 29 H 1.07998 * 119.47525 * 179.97438 * 7 6 3 30 30 H 1.08008 * 120.02990 * 359.97438 * 11 10 9 31 31 H 1.07999 * 119.86437 * 180.02562 * 12 11 10 32 32 H 1.08001 * 119.83508 * 180.27823 * 13 12 11 33 33 H 1.08004 * 119.97126 * 180.02562 * 14 13 12 34 34 H 0.97006 * 119.99449 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2172 1.2031 0.0000 4 6 1.5325 2.4609 0.0005 5 7 0.9893 3.4586 0.0015 6 6 3.6164 1.1466 -0.0057 7 6 4.2412 -0.0853 -0.0059 8 7 3.5421 -1.2017 -0.0012 9 6 2.2149 -1.1991 0.0033 10 6 1.4788 -2.4856 0.0079 11 6 0.5626 -2.7644 1.0199 12 6 -0.1198 -3.9637 1.0200 13 6 0.1014 -4.8928 0.0174 14 6 1.0069 -4.6284 -0.9911 15 6 1.7007 -3.4266 -1.0046 16 8 2.5901 -3.1648 -1.9946 17 6 2.6656 -4.0581 -3.0015 18 1 1.9762 -4.8885 -3.0395 19 6 3.6285 -3.9106 -3.9884 20 7 4.4679 -2.8989 -3.9423 21 14 3.7327 -5.1480 -5.3839 22 1 2.6831 -6.1836 -5.2067 23 1 3.5278 -4.4516 -6.6793 24 1 5.0702 -5.7930 -5.3748 25 1 -0.3634 -0.0801 1.0246 26 1 -0.3634 0.9272 -0.4430 27 1 -0.3633 -0.8473 -0.5815 28 1 4.2000 2.0552 -0.0096 29 1 5.3201 -0.1339 -0.0107 30 1 0.3872 -2.0427 1.8041 31 1 -0.8300 -4.1783 1.8048 32 1 -0.4400 -5.8274 0.0220 33 1 1.1745 -5.3571 -1.7704 34 1 5.1418 -2.7960 -4.6325 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243585071.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:09 Heat of formation + Delta-G solvation = 45.004344 kcal Electronic energy + Delta-G solvation = -20641.658169 eV Core-core repulsion = 17504.729798 eV Total energy + Delta-G solvation = -3136.928371 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.61942 -40.35969 -38.07963 -37.81163 -34.72157 -34.28162 -33.86522 -30.94040 -30.40088 -28.41060 -27.30570 -25.75126 -23.83108 -22.99424 -22.42724 -19.97938 -19.75488 -18.45160 -17.81242 -16.70081 -16.38755 -16.33510 -16.12150 -15.58795 -15.37374 -15.27481 -15.10541 -14.46627 -14.27727 -14.16771 -14.12489 -14.01869 -13.63792 -13.49806 -13.34884 -12.97580 -12.74881 -12.51443 -12.25598 -12.16543 -12.07715 -11.21339 -10.76480 -10.71670 -10.41527 -10.03602 -9.43273 -8.85147 -8.40891 -6.06646 -0.35639 -0.03792 0.65367 0.83882 1.36993 1.42182 1.44820 1.53655 1.93859 2.19619 2.57716 2.79809 2.94851 3.22568 3.41707 3.55051 3.70904 3.81349 4.00529 4.25312 4.30885 4.43719 4.50746 4.55614 4.68107 4.72007 4.75202 4.86646 5.03085 5.09365 5.16084 5.18629 5.28097 5.57338 5.70462 5.76945 5.81774 6.06203 6.23497 6.26969 7.03461 7.12791 7.86717 8.80704 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.014736 B = 0.006359 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.627489 B = 4401.911789 C = 5660.229514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.085 4.085 3 C 0.000 4.000 4 C 0.286 3.714 5 N -0.434 5.434 6 C -0.116 4.116 7 C 0.092 3.908 8 N -0.475 5.475 9 C 0.181 3.819 10 C -0.141 4.141 11 C -0.047 4.047 12 C -0.192 4.192 13 C -0.060 4.060 14 C -0.252 4.252 15 C 0.139 3.861 16 O -0.204 6.204 17 C -0.413 4.413 18 H 0.098 0.902 19 C -0.017 4.017 20 N -0.907 5.907 21 Si 1.011 2.989 22 H -0.252 1.252 23 H -0.272 1.272 24 H -0.271 1.271 25 H 0.106 0.894 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.178 0.822 29 H 0.182 0.818 30 H 0.148 0.852 31 H 0.155 0.845 32 H 0.145 0.855 33 H 0.117 0.883 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.948 2.235 9.112 11.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.090 4.090 3 C -0.011 4.011 4 C -0.029 4.029 5 N -0.110 5.110 6 C -0.138 4.138 7 C -0.066 4.066 8 N -0.184 5.184 9 C 0.045 3.955 10 C -0.144 4.144 11 C -0.065 4.065 12 C -0.211 4.211 13 C -0.078 4.078 14 C -0.271 4.271 15 C 0.086 3.914 16 O -0.108 6.108 17 C -0.489 4.489 18 H 0.116 0.884 19 C -0.215 4.215 20 N -0.545 5.545 21 Si 0.832 3.168 22 H -0.176 1.176 23 H -0.197 1.197 24 H -0.196 1.196 25 H 0.124 0.876 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.196 0.804 29 H 0.199 0.801 30 H 0.166 0.834 31 H 0.173 0.827 32 H 0.162 0.838 33 H 0.135 0.865 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.000 3.259 8.951 11.258 hybrid contribution 0.423 -0.242 -1.089 1.193 sum -5.577 3.017 7.862 10.100 Atomic orbital electron populations 1.20886 0.88145 1.03118 1.04510 1.21050 0.98609 0.91043 0.98262 1.16045 0.93175 0.86018 1.05843 1.25210 0.92615 0.92061 0.92999 1.81246 1.08925 1.11494 1.09287 1.22486 0.92317 1.01047 0.97913 1.23134 1.01623 0.86630 0.95207 1.67714 1.08523 1.33201 1.08928 1.19571 0.88623 0.92092 0.95238 1.17805 1.04166 0.93326 0.99061 1.21086 0.92663 0.97641 0.95152 1.21076 1.04309 0.94352 1.01330 1.21264 0.94663 0.99622 0.92298 1.21265 1.04018 0.98009 1.03847 1.19879 0.89408 0.93287 0.88811 1.83998 1.51682 1.46517 1.28634 1.21816 1.18033 1.07878 1.01196 0.88442 1.26423 0.94350 0.99674 1.01090 1.70207 1.18585 1.30558 1.35101 0.84625 0.79001 0.77074 0.76142 1.17585 1.19699 1.19608 0.87595 0.91493 0.90803 0.80414 0.80140 0.83399 0.82696 0.83751 0.86485 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.82 8.30 71.24 0.59 -2.23 16 2 C -0.08 -2.68 5.93 -19.26 -0.11 -2.80 16 3 C 0.00 0.01 5.75 -21.24 -0.12 -0.12 16 4 C 0.29 7.76 13.91 88.33 1.23 8.99 16 5 N -0.43 -12.70 18.54 19.00 0.35 -12.35 16 6 C -0.12 -3.00 9.86 22.68 0.22 -2.77 16 7 C 0.09 2.94 11.16 84.68 0.95 3.89 16 8 N -0.48 -19.80 10.00 -185.11 -1.85 -21.65 16 9 C 0.18 7.06 5.85 41.91 0.25 7.31 16 10 C -0.14 -5.65 4.64 -19.94 -0.09 -5.74 16 11 C -0.05 -1.41 8.29 22.47 0.19 -1.23 16 12 C -0.19 -5.22 10.03 22.26 0.22 -5.00 16 13 C -0.06 -1.89 10.03 22.29 0.22 -1.66 16 14 C -0.25 -10.46 9.13 22.36 0.20 -10.26 16 15 C 0.14 6.63 6.64 22.82 0.15 6.78 16 16 O -0.20 -11.77 8.99 -21.33 -0.19 -11.96 16 17 C -0.41 -23.46 9.44 67.92 0.64 -22.82 16 18 H 0.10 5.12 5.30 -2.91 -0.02 5.11 16 19 C -0.02 -0.93 5.49 84.84 0.47 -0.46 16 20 N -0.91 -54.45 13.67 21.61 0.30 -54.16 16 21 Si 1.01 42.46 29.55 68.60 2.03 44.49 16 22 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 23 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 25 H 0.11 2.08 7.66 -2.38 -0.02 2.07 16 26 H 0.07 1.63 7.02 -2.39 -0.02 1.62 16 27 H 0.07 2.10 7.01 -2.39 -0.02 2.08 16 28 H 0.18 3.12 8.06 -2.91 -0.02 3.10 16 29 H 0.18 4.79 8.06 -2.91 -0.02 4.77 16 30 H 0.15 3.41 7.44 -2.91 -0.02 3.39 16 31 H 0.16 2.92 8.06 -2.91 -0.02 2.89 16 32 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 33 H 0.12 5.01 5.71 -2.91 -0.02 5.00 16 34 H 0.27 14.88 8.31 -92.70 -0.77 14.11 16 Total: -1.00 -72.69 307.24 6.78 -65.90 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 1.15 Total: 17.84 kcal Atomic # 6 Polarization: -33.12 SS G_CDS: 5.00 Total: -28.12 kcal Atomic # 7 Polarization: -86.95 SS G_CDS: -1.20 Total: -88.15 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -0.19 Total: -11.96 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -72.69 6.78 -65.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585071.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.908 kcal (2) G-P(sol) polarization free energy of solvation -72.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds