Wall clock time and date at job start Tue Mar 31 2020 01:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38672 * 120.36444 * 2 1 4 4 C 1.38386 * 118.60998 * 179.97438 * 3 2 1 5 5 C 1.39657 * 119.28391 * 359.97438 * 4 3 2 6 6 C 1.48227 * 119.66038 * 179.97438 * 5 4 3 7 7 C 1.39333 * 120.15906 * 359.72585 * 6 5 4 8 8 C 1.37992 * 119.93502 * 179.72463 * 7 6 5 9 9 C 1.38460 * 120.27982 * 0.57475 * 8 7 6 10 10 C 1.38087 * 120.33339 * 359.70309 * 9 8 7 11 11 C 1.38777 * 120.05332 * 359.97438 * 10 9 8 12 12 O 1.35639 * 120.14258 * 179.97438 * 11 10 9 13 13 C 1.34807 * 116.99792 * 354.40895 * 12 11 10 14 14 H 1.08004 * 120.00488 * 5.05333 * 13 12 11 15 15 C 1.38664 * 120.00042 * 185.06378 * 13 12 11 16 16 N 1.31549 * 119.99641 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00309 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46805 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47236 * 119.99397 * 17 15 13 20 20 H 1.48493 * 109.47188 * 240.00060 * 17 15 13 21 21 N 1.32411 * 120.68138 * 359.97438 * 5 4 3 22 22 C 1.32735 * 121.50157 * 0.03986 * 21 5 4 23 23 C 1.43198 * 119.67361 * 179.97438 * 22 21 5 24 24 N 3.47618 * 80.43427 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.47090 * 90.00060 * 1 2 3 26 26 H 1.08996 * 109.47537 * 209.99900 * 1 2 3 27 27 H 1.09002 * 109.47132 * 330.00215 * 1 2 3 28 28 H 1.08001 * 120.69313 * 359.95634 * 3 2 1 29 29 H 1.08001 * 120.35261 * 179.72682 * 4 3 2 30 30 H 1.08000 * 120.03087 * 0.02562 * 7 6 5 31 31 H 1.07996 * 119.85601 * 180.30327 * 8 7 6 32 32 H 1.07996 * 119.83357 * 179.72253 * 9 8 7 33 33 H 1.08001 * 119.97485 * 180.02562 * 10 9 8 34 34 H 0.97005 * 119.99615 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2080 1.1965 0.0000 4 6 3.5912 1.1541 0.0005 5 6 4.2367 -0.0843 0.0016 6 6 5.7179 -0.1394 0.0016 7 6 6.4623 1.0384 -0.0052 8 6 7.8410 0.9817 0.0006 9 6 8.4895 -0.2416 0.0012 10 6 7.7630 -1.4160 0.0021 11 6 6.3759 -1.3751 0.0031 12 8 5.6605 -2.5275 0.0035 13 6 6.3534 -3.6779 -0.1140 14 1 7.4333 -3.6598 -0.1209 15 6 5.6797 -4.8847 -0.2264 16 7 4.3644 -4.9069 -0.2178 17 14 6.6397 -6.4787 -0.3900 18 1 8.0951 -6.1839 -0.3738 19 1 6.3036 -7.3775 0.7432 20 1 6.2837 -7.1418 -1.6702 21 7 3.5392 -1.2098 0.0026 22 6 2.2118 -1.2031 0.0019 23 6 1.4967 -2.4437 0.0024 24 7 0.9293 -3.4278 0.0015 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6853 2.1416 -0.0007 29 1 4.1652 2.0689 -0.0039 30 1 5.9606 1.9948 -0.0101 31 1 8.4166 1.8955 0.0003 32 1 9.5688 -0.2776 0.0012 33 1 8.2748 -2.3670 0.0030 34 1 3.8931 -5.7511 -0.2968 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243585262.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:34 Heat of formation + Delta-G solvation = 53.471422 kcal Electronic energy + Delta-G solvation = -20661.952836 eV Core-core repulsion = 17525.391624 eV Total energy + Delta-G solvation = -3136.561211 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.48919 -40.34072 -38.04800 -37.42864 -34.85114 -34.19955 -33.44980 -31.32338 -30.48923 -28.00007 -27.31237 -25.56002 -24.00498 -22.86944 -22.12184 -19.97430 -19.69081 -18.70932 -17.49882 -16.77843 -16.17955 -16.14349 -15.91526 -15.86340 -15.31025 -15.24137 -14.71442 -14.27723 -14.07231 -14.04668 -13.90675 -13.67417 -13.63257 -13.47668 -13.30698 -12.97541 -12.58400 -12.50215 -12.35557 -12.19267 -12.02604 -11.18767 -10.77645 -10.65027 -10.43118 -10.11141 -9.27705 -8.66360 -8.36969 -6.02120 -0.39482 0.13961 0.82759 0.96972 1.29935 1.38685 1.46893 1.60114 1.97181 2.16058 2.79144 2.84552 3.07408 3.40332 3.54217 3.62371 3.81863 3.95817 4.08296 4.28927 4.31255 4.47986 4.57458 4.62296 4.77792 4.79381 4.88116 5.05627 5.13881 5.17275 5.21387 5.27826 5.33542 5.66396 5.71973 5.82400 5.83507 6.04626 6.30766 6.45425 7.03999 7.18706 7.92609 8.79572 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.012064 B = 0.008240 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.387833 B = 3397.043308 C = 5698.125997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.095 4.095 3 C -0.062 4.062 4 C -0.129 4.129 5 C 0.158 3.842 6 C -0.159 4.159 7 C -0.041 4.041 8 C -0.199 4.199 9 C -0.059 4.059 10 C -0.263 4.263 11 C 0.131 3.869 12 O -0.171 6.171 13 C -0.419 4.419 14 H 0.095 0.905 15 C -0.016 4.016 16 N -0.884 5.884 17 Si 1.006 2.994 18 H -0.250 1.250 19 H -0.275 1.275 20 H -0.275 1.275 21 N -0.456 5.456 22 C 0.151 3.849 23 C 0.284 3.716 24 N -0.439 5.439 25 H 0.089 0.911 26 H 0.048 0.952 27 H 0.115 0.885 28 H 0.200 0.800 29 H 0.185 0.815 30 H 0.169 0.831 31 H 0.159 0.841 32 H 0.142 0.858 33 H 0.112 0.888 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.627 18.584 0.141 18.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.101 4.101 3 C -0.087 4.087 4 C -0.149 4.149 5 C 0.019 3.981 6 C -0.162 4.162 7 C -0.060 4.060 8 C -0.218 4.218 9 C -0.077 4.077 10 C -0.283 4.283 11 C 0.077 3.923 12 O -0.073 6.073 13 C -0.495 4.495 14 H 0.112 0.888 15 C -0.216 4.216 16 N -0.520 5.520 17 Si 0.827 3.173 18 H -0.174 1.174 19 H -0.200 1.200 20 H -0.200 1.200 21 N -0.166 5.166 22 C 0.013 3.987 23 C -0.032 4.032 24 N -0.117 5.117 25 H 0.107 0.893 26 H 0.067 0.933 27 H 0.133 0.867 28 H 0.217 0.783 29 H 0.202 0.798 30 H 0.186 0.814 31 H 0.176 0.824 32 H 0.159 0.841 33 H 0.130 0.870 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.500 16.026 0.150 16.096 hybrid contribution 0.444 -0.995 -0.068 1.091 sum -1.057 15.031 0.081 15.068 Atomic orbital electron populations 1.20883 0.87695 1.04217 1.03967 1.21138 0.98836 0.91585 0.98502 1.21845 0.92979 0.98448 0.95406 1.22681 0.95995 0.98139 0.98112 1.20031 0.92981 0.88718 0.96363 1.18172 0.90270 0.91703 1.16031 1.21266 0.94043 0.95997 0.94674 1.21120 0.94125 0.98003 1.08532 1.21287 1.00297 0.91638 0.94501 1.21259 0.93216 1.00134 1.13660 1.20146 0.91442 0.88064 0.92647 1.84244 1.34042 1.11119 1.77859 1.21839 0.92009 0.83259 1.52426 0.88761 1.26379 0.96821 1.01962 0.96421 1.70305 1.07979 1.26901 1.46786 0.84702 0.78498 0.76085 0.78010 1.17361 1.20034 1.20021 1.67807 1.06554 1.32839 1.09382 1.16642 0.89012 0.87362 1.05695 1.25555 0.92174 0.92418 0.93037 1.81024 1.12628 1.08959 1.09064 0.89262 0.93336 0.86681 0.78272 0.79787 0.81362 0.82356 0.84054 0.87042 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.15 9.62 71.24 0.69 -1.47 16 2 C -0.10 -2.58 5.93 -19.47 -0.12 -2.70 16 3 C -0.06 -1.21 9.84 22.41 0.22 -0.99 16 4 C -0.13 -3.10 9.46 22.65 0.21 -2.89 16 5 C 0.16 6.09 6.73 42.06 0.28 6.37 16 6 C -0.16 -6.40 5.89 -19.93 -0.12 -6.52 16 7 C -0.04 -1.16 9.41 22.47 0.21 -0.95 16 8 C -0.20 -5.29 10.03 22.26 0.22 -5.07 16 9 C -0.06 -1.89 10.03 22.29 0.22 -1.67 16 10 C -0.26 -11.40 9.16 22.36 0.20 -11.19 16 11 C 0.13 6.53 6.65 22.82 0.15 6.68 16 12 O -0.17 -10.26 7.59 -21.28 -0.16 -10.42 16 13 C -0.42 -25.01 9.49 67.92 0.64 -24.36 16 14 H 0.10 5.24 5.21 -2.91 -0.02 5.22 16 15 C -0.02 -0.92 5.49 84.84 0.47 -0.46 16 16 N -0.88 -56.59 13.67 21.62 0.30 -56.29 16 17 Si 1.01 45.74 29.55 68.60 2.03 47.77 16 18 H -0.25 -10.45 7.11 99.48 0.71 -9.75 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 21 N -0.46 -21.74 8.06 -178.35 -1.44 -23.18 16 22 C 0.15 6.19 6.58 40.54 0.27 6.46 16 23 C 0.28 13.14 13.99 88.33 1.24 14.38 16 24 N -0.44 -21.53 18.54 19.00 0.35 -21.18 16 25 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.05 1.15 7.08 -2.39 -0.02 1.13 16 27 H 0.11 1.30 8.09 -2.39 -0.02 1.28 16 28 H 0.20 1.55 8.06 -2.91 -0.02 1.52 16 29 H 0.19 2.59 6.18 -2.91 -0.02 2.57 16 30 H 0.17 2.92 6.17 -2.91 -0.02 2.90 16 31 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 32 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 33 H 0.11 5.05 5.64 -2.91 -0.02 5.03 16 34 H 0.26 15.90 8.31 -92.70 -0.77 15.13 16 Total: -1.00 -84.86 306.04 7.03 -77.83 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 1.16 Total: 9.85 kcal Atomic # 6 Polarization: -29.17 SS G_CDS: 4.80 Total: -24.38 kcal Atomic # 7 Polarization: -99.86 SS G_CDS: -0.79 Total: -100.65 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -0.16 Total: -10.42 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -84.86 7.03 -77.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585262.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.300 kcal (2) G-P(sol) polarization free energy of solvation -84.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds