Wall clock time and date at job start Tue Mar 31 2020 01:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38426 * 120.35978 * 2 1 4 4 C 1.38633 * 118.61479 * 179.78394 * 3 2 1 5 5 C 1.39481 * 119.26266 * 0.51392 * 4 3 2 6 6 C 1.43202 * 119.67254 * 179.70704 * 5 4 3 7 7 N 4.79777 * 134.91142 * 0.08169 * 3 1 2 8 8 N 1.32701 * 120.65778 * 359.72531 * 5 4 3 9 9 C 1.32437 * 121.50017 * 0.02562 * 8 5 4 10 10 C 1.48224 * 119.66521 * 179.97438 * 9 8 5 11 11 C 1.39326 * 120.16568 * 123.32221 * 10 9 8 12 12 C 1.37986 * 119.94199 * 179.97438 * 11 10 9 13 13 C 1.38464 * 120.27900 * 0.02592 * 12 11 10 14 14 C 1.38092 * 120.33169 * 359.97438 * 13 12 11 15 15 C 1.38775 * 120.04923 * 359.70253 * 14 13 12 16 16 O 1.35647 * 120.13999 * 180.27978 * 15 14 13 17 17 C 1.34814 * 116.99339 * 354.04326 * 16 15 14 18 18 H 1.08001 * 120.00693 * 354.72895 * 17 16 15 19 19 C 1.38658 * 119.99538 * 174.73776 * 17 16 15 20 20 N 1.31554 * 120.00138 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00020 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47255 * 59.99388 * 21 19 17 23 23 H 1.48502 * 109.47543 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46993 * 299.99448 * 21 19 17 25 25 H 1.08993 * 109.47200 * 264.35255 * 1 2 3 26 26 H 1.08996 * 109.47083 * 144.34585 * 1 2 3 27 27 H 1.09007 * 109.47080 * 24.34984 * 1 2 3 28 28 H 1.08007 * 120.69669 * 0.02562 * 3 2 1 29 29 H 1.07992 * 120.36864 * 180.22250 * 4 3 2 30 30 H 1.08006 * 120.02839 * 359.96385 * 11 10 9 31 31 H 1.07998 * 119.85897 * 180.02562 * 12 11 10 32 32 H 1.08001 * 119.83245 * 179.97438 * 13 12 11 33 33 H 1.07992 * 119.97194 * 180.02562 * 14 13 12 34 34 H 0.97003 * 119.99986 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2066 1.1944 0.0000 4 6 3.5923 1.1522 0.0046 5 6 4.2367 -0.0848 -0.0019 6 6 5.6678 -0.1386 -0.0036 7 7 6.8029 -0.1812 -0.0048 8 7 3.5370 -1.2123 -0.0068 9 6 2.2127 -1.2048 -0.0063 10 6 1.4718 -2.4886 -0.0126 11 6 0.5491 -2.7693 0.9929 12 6 -0.1384 -3.9657 0.9823 13 6 0.0849 -4.8903 -0.0239 14 6 0.9968 -4.6239 -1.0261 15 6 1.6909 -3.4222 -1.0325 16 8 2.5830 -3.1562 -2.0191 17 6 2.8412 -4.1485 -2.8944 18 1 2.4121 -5.1279 -2.7426 19 6 3.6580 -3.9116 -3.9896 20 7 4.1804 -2.7185 -4.1748 21 14 4.0165 -5.2866 -5.2021 22 1 2.7437 -5.7636 -5.8002 23 1 4.9081 -4.7797 -6.2761 24 1 4.6823 -6.4096 -4.4944 25 1 -0.3633 -0.1011 1.0226 26 1 -0.3633 -0.8350 -0.5990 27 1 -0.3633 0.9363 -0.4237 28 1 1.6839 2.1396 0.0004 29 1 4.1664 2.0669 0.0083 30 1 0.3722 -2.0512 1.7800 31 1 -0.8537 -4.1817 1.7621 32 1 -0.4570 -5.8246 -0.0250 33 1 1.1661 -5.3490 -1.8082 34 1 4.7521 -2.5530 -4.9408 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243585386.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:12 Heat of formation + Delta-G solvation = 64.653627 kcal Electronic energy + Delta-G solvation = -20693.094724 eV Core-core repulsion = 17557.018409 eV Total energy + Delta-G solvation = -3136.076314 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.26220 -38.81006 -36.55043 -36.12081 -33.46215 -32.65505 -32.25465 -29.55092 -28.88287 -27.58469 -25.42013 -23.82692 -22.64607 -21.64370 -20.92754 -18.83609 -18.02664 -17.08426 -16.22421 -15.18134 -15.11553 -14.79529 -14.56596 -14.13962 -13.90325 -13.62448 -13.51255 -13.22066 -12.85151 -12.74954 -12.57929 -12.50325 -12.17481 -11.99978 -11.73973 -11.63656 -11.31578 -10.89124 -10.84190 -10.79966 -10.48758 -9.58127 -9.51553 -9.13930 -8.88708 -8.68153 -8.04291 -7.26564 -6.48748 -4.06195 0.88305 1.41922 2.07402 2.32182 2.88340 3.11116 3.12936 3.15336 3.17800 3.90136 3.93047 4.25605 4.48048 4.79860 4.89908 5.04661 5.09688 5.16776 5.23541 5.44555 5.55215 5.61710 5.72970 5.81127 5.87714 6.06075 6.08874 6.18811 6.26788 6.39961 6.59111 6.67029 6.83590 7.00457 7.12881 7.28433 7.31081 7.70340 7.71284 7.93166 8.26716 8.95524 9.64252 10.67615 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.011704 B = 0.007833 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.753543 B = 3573.932176 C = 5231.669136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.106 4.106 3 C -0.081 4.081 4 C -0.133 4.133 5 C 0.187 3.813 6 C 0.280 3.720 7 N -0.408 5.408 8 N -0.418 5.418 9 C 0.217 3.783 10 C -0.140 4.140 11 C -0.046 4.046 12 C -0.220 4.220 13 C -0.061 4.061 14 C -0.235 4.235 15 C 0.179 3.821 16 O -0.153 6.153 17 C -0.393 4.393 18 H 0.092 0.908 19 C 0.044 3.956 20 N -0.851 5.851 21 Si 0.939 3.061 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.269 1.269 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.141 0.859 29 H 0.139 0.861 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.130 0.870 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.993 5.360 7.651 12.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.109 4.109 3 C -0.106 4.106 4 C -0.155 4.155 5 C 0.048 3.952 6 C -0.037 4.037 7 N -0.085 5.085 8 N -0.127 5.127 9 C 0.077 3.923 10 C -0.143 4.143 11 C -0.065 4.065 12 C -0.239 4.239 13 C -0.079 4.079 14 C -0.254 4.254 15 C 0.122 3.878 16 O -0.053 6.053 17 C -0.469 4.469 18 H 0.110 0.890 19 C -0.162 4.162 20 N -0.484 5.484 21 Si 0.763 3.237 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.194 1.194 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.084 0.916 28 H 0.159 0.841 29 H 0.156 0.844 30 H 0.132 0.868 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.147 0.853 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.451 4.833 7.376 10.926 hybrid contribution -0.574 -0.063 -0.788 0.977 sum -7.025 4.771 6.588 10.747 Atomic orbital electron populations 1.20812 0.89857 1.03343 1.02650 1.21107 0.97840 0.93025 0.98901 1.21258 0.93146 0.98113 0.98083 1.21858 0.95276 0.97371 1.01042 1.16291 0.86108 0.90143 1.02682 1.25071 0.91835 0.93192 0.93559 1.81142 1.11845 1.07284 1.08184 1.67743 1.08246 1.28434 1.08288 1.19462 0.87352 0.92259 0.93195 1.17328 1.04066 0.94014 0.98846 1.20606 0.93902 0.96421 0.95562 1.20464 1.05676 0.95966 1.01823 1.20851 0.95799 0.97825 0.93452 1.21136 1.02335 0.99305 1.02640 1.19271 0.88031 0.91702 0.88778 1.84012 1.49108 1.38970 1.33246 1.21307 1.31013 0.90569 1.04033 0.89038 1.25288 0.95903 0.97833 0.97214 1.70037 1.29203 1.20721 1.28439 0.85811 0.78813 0.79713 0.79317 1.19420 1.20250 1.19401 0.90772 0.90145 0.91575 0.84126 0.84360 0.86810 0.87259 0.87317 0.85268 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 8.59 36.00 0.31 -1.00 16 2 C -0.11 -1.60 5.90 -104.04 -0.61 -2.22 16 3 C -0.08 -1.03 9.81 -39.37 -0.39 -1.42 16 4 C -0.13 -1.86 9.79 -38.97 -0.38 -2.25 16 5 C 0.19 3.46 6.58 -85.10 -0.56 2.90 16 6 C 0.28 5.43 15.53 -22.47 -0.35 5.08 16 7 N -0.41 -8.27 18.54 41.84 0.78 -7.50 16 8 N -0.42 -9.02 9.94 -7.72 -0.08 -9.10 16 9 C 0.22 4.23 5.86 -82.98 -0.49 3.75 16 10 C -0.14 -2.82 4.65 -104.73 -0.49 -3.31 16 11 C -0.05 -0.75 8.28 -39.27 -0.33 -1.08 16 12 C -0.22 -3.46 10.03 -39.59 -0.40 -3.86 16 13 C -0.06 -1.04 10.03 -39.55 -0.40 -1.43 16 14 C -0.23 -4.87 9.13 -39.44 -0.36 -5.23 16 15 C 0.18 4.18 6.64 -38.72 -0.26 3.93 16 16 O -0.15 -4.24 8.99 0.41 0.00 -4.23 16 17 C -0.39 -10.81 9.44 30.89 0.29 -10.52 16 18 H 0.09 2.31 5.30 -52.49 -0.28 2.04 16 19 C 0.04 1.19 5.49 -17.52 -0.10 1.09 16 20 N -0.85 -24.92 13.67 55.48 0.76 -24.17 16 21 Si 0.94 20.55 29.55 -169.99 -5.02 15.53 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 H 0.07 0.73 7.59 -51.93 -0.39 0.33 16 26 H 0.08 1.11 7.04 -51.93 -0.37 0.74 16 27 H 0.07 0.63 8.06 -51.93 -0.42 0.22 16 28 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 29 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 30 H 0.11 1.53 7.37 -52.48 -0.39 1.14 16 31 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.13 2.69 5.72 -52.49 -0.30 2.38 16 34 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 309.38 15.07 4.66 4.66 Total: -1.00 -32.37 309.38 -6.36 -38.73 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -2.97 Total: 1.65 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -4.50 Total: -15.57 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 1.46 Total: -40.76 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: 0.00 Total: -4.23 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.37 -6.36 -38.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585386.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.384 kcal (2) G-P(sol) polarization free energy of solvation -32.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds