Wall clock time and date at job start Tue Mar 31 2020 01:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31513 * 119.65413 * 2 1 4 4 C 1.32826 * 121.76041 * 180.28158 * 3 2 1 5 5 C 1.48052 * 119.56759 * 179.70620 * 4 3 2 6 6 C 1.39430 * 120.17325 * 179.73001 * 5 4 3 7 7 C 1.37942 * 119.94064 * 180.02562 * 6 5 4 8 8 C 1.38497 * 120.28494 * 0.02562 * 7 6 5 9 9 C 1.38086 * 120.35543 * 359.97438 * 8 7 6 10 10 C 1.38780 * 120.05703 * 0.02562 * 9 8 7 11 11 O 1.35608 * 120.14739 * 180.02562 * 10 9 8 12 12 C 1.34807 * 116.99972 * 354.40603 * 11 10 9 13 13 H 1.08002 * 119.99924 * 5.07518 * 12 11 10 14 14 C 1.38672 * 120.00150 * 185.06742 * 12 11 10 15 15 N 1.31539 * 120.00210 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99816 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47169 * 60.00301 * 16 14 12 18 18 H 1.48500 * 109.46684 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46970 * 300.00167 * 16 14 12 20 20 C 1.39608 * 120.85779 * 359.44237 * 4 3 2 21 21 C 1.37969 * 119.22470 * 0.26920 * 20 4 3 22 22 C 1.39704 * 119.65874 * 179.72503 * 2 1 3 23 23 C 1.43204 * 120.45685 * 0.02562 * 22 2 1 24 24 N 3.49046 * 80.29917 * 179.74148 * 2 1 3 25 25 H 1.09000 * 109.47635 * 270.26983 * 1 2 3 26 26 H 1.08995 * 109.47182 * 30.27806 * 1 2 3 27 27 H 1.09004 * 109.46750 * 150.26893 * 1 2 3 28 28 H 1.08008 * 120.02870 * 0.02693 * 6 5 4 29 29 H 1.07998 * 119.86098 * 180.27700 * 7 6 5 30 30 H 1.08005 * 119.82331 * 179.97438 * 8 7 6 31 31 H 1.07993 * 119.96782 * 179.97438 * 9 8 7 32 32 H 0.96993 * 120.00112 * 179.97438 * 15 14 12 33 33 H 1.07997 * 120.38417 * 180.24656 * 20 4 3 34 34 H 1.07994 * 120.81186 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1577 1.1429 0.0000 4 6 3.4850 1.1917 -0.0056 5 6 4.1677 2.5054 -0.0119 6 6 5.5605 2.5714 -0.0121 7 6 6.1916 3.7980 -0.0174 8 6 5.4477 4.9662 -0.0221 9 6 4.0678 4.9148 -0.0220 10 6 3.4179 3.6886 -0.0166 11 8 2.0628 3.6360 -0.0170 12 6 1.4049 4.8074 0.0943 13 1 1.9542 5.7372 0.0961 14 6 0.0227 4.8183 0.2065 15 7 -0.6463 3.6858 0.2047 16 14 -0.8890 6.4416 0.3601 17 1 -0.6197 7.2759 -0.8385 18 1 -2.3473 6.1820 0.4657 19 1 -0.4246 7.1570 1.5757 20 6 4.2447 0.0204 0.0000 21 6 3.6010 -1.1999 0.0058 22 6 2.1983 -1.2140 0.0058 23 6 1.4848 -2.4556 0.0112 24 7 0.9188 -3.4405 0.0155 25 1 -0.3634 0.0048 1.0276 26 1 -0.3633 0.8874 -0.5181 27 1 -0.3633 -0.8924 -0.5097 28 1 6.1446 1.6629 -0.0080 29 1 7.2704 3.8476 -0.0221 30 1 5.9496 5.9226 -0.0259 31 1 3.4939 5.8297 -0.0252 32 1 -1.6130 3.6935 0.2836 33 1 5.3236 0.0691 -0.0005 34 1 4.1633 -2.1219 0.0106 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243585755.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:03 Heat of formation + Delta-G solvation = 69.437182 kcal Electronic energy + Delta-G solvation = -20592.754816 eV Core-core repulsion = 17456.885932 eV Total energy + Delta-G solvation = -3135.868884 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.09479 -38.82961 -36.56480 -36.21214 -33.04664 -32.53819 -32.23584 -29.90461 -28.85164 -27.26976 -25.44925 -24.22361 -22.39341 -20.96968 -20.90612 -18.62492 -17.98759 -17.27168 -16.16923 -15.65977 -14.73184 -14.46953 -14.42666 -14.08869 -14.00548 -13.68484 -13.39062 -12.89624 -12.89015 -12.77137 -12.49953 -12.46945 -12.06681 -11.75651 -11.61336 -11.54858 -11.34703 -10.92988 -10.88862 -10.74997 -10.52422 -9.55255 -9.50314 -8.98144 -8.88920 -8.68242 -7.90502 -7.15425 -6.53225 -4.06104 0.73323 1.67174 2.13794 2.32234 2.87881 3.08605 3.09826 3.11493 3.35375 3.88445 4.15024 4.20770 4.65211 4.66099 4.95227 5.00791 5.03677 5.15049 5.39697 5.54707 5.60442 5.77446 5.94827 5.96992 6.00946 6.09976 6.19066 6.28599 6.40349 6.57801 6.65801 6.77672 6.97142 7.00272 7.16447 7.25833 7.28774 7.68966 7.70394 7.87958 8.62464 8.89252 9.62145 10.60128 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.012862 B = 0.007202 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.420171 B = 3886.985799 C = 6044.824848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.206 3.794 3 N -0.433 5.433 4 C 0.234 3.766 5 C -0.161 4.161 6 C -0.040 4.040 7 C -0.227 4.227 8 C -0.055 4.055 9 C -0.238 4.238 10 C 0.177 3.823 11 O -0.111 6.111 12 C -0.397 4.397 13 H 0.091 0.909 14 C 0.048 3.952 15 N -0.828 5.828 16 Si 0.937 3.063 17 H -0.270 1.270 18 H -0.277 1.277 19 H -0.270 1.270 20 C -0.201 4.201 21 C -0.023 4.023 22 C -0.137 4.137 23 C 0.277 3.723 24 N -0.444 5.444 25 H 0.080 0.920 26 H 0.105 0.895 27 H 0.059 0.941 28 H 0.117 0.883 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.130 0.870 32 H 0.270 0.730 33 H 0.138 0.862 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.993 -2.134 -0.223 8.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.062 3.938 3 N -0.142 5.142 4 C 0.099 3.901 5 C -0.163 4.163 6 C -0.060 4.060 7 C -0.246 4.246 8 C -0.074 4.074 9 C -0.257 4.257 10 C 0.117 3.883 11 O -0.008 6.008 12 C -0.473 4.473 13 H 0.108 0.892 14 C -0.160 4.160 15 N -0.459 5.459 16 Si 0.761 3.239 17 H -0.195 1.195 18 H -0.202 1.202 19 H -0.195 1.195 20 C -0.222 4.222 21 C -0.051 4.051 22 C -0.144 4.144 23 C -0.037 4.037 24 N -0.120 5.120 25 H 0.099 0.901 26 H 0.124 0.876 27 H 0.078 0.922 28 H 0.135 0.865 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.147 0.853 32 H 0.080 0.920 33 H 0.156 0.844 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.148 -3.158 -0.217 6.915 hybrid contribution 0.400 0.554 0.107 0.692 sum 6.548 -2.604 -0.110 7.048 Atomic orbital electron populations 1.20816 0.88386 1.03820 1.03606 1.21538 0.97247 0.86023 0.88979 1.68170 1.07893 1.26245 1.11865 1.20065 0.88944 0.92365 0.88730 1.17547 0.91850 0.88726 1.18221 1.20746 0.91931 0.97472 0.95810 1.20470 0.98638 0.92322 1.13180 1.20895 0.93500 0.97504 0.95509 1.21170 0.94673 0.98032 1.11823 1.19350 0.85290 0.92067 0.91548 1.84226 1.11447 1.32175 1.72943 1.21468 0.89916 0.84038 1.51859 0.89176 1.25263 0.95592 0.98900 0.96218 1.70053 1.08066 1.25471 1.42350 0.85847 0.78471 0.80314 0.79229 1.19507 1.20228 1.19516 1.21863 1.01209 0.91995 1.07096 1.21278 0.91810 0.98459 0.93510 1.16911 0.93101 0.87979 1.16384 1.25487 0.92988 0.92413 0.92844 1.81183 1.08825 1.11331 1.10667 0.90138 0.87612 0.92230 0.86481 0.87257 0.87314 0.85262 0.91964 0.84401 0.84770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 9.77 36.01 0.35 -1.59 16 2 C 0.21 3.86 6.82 -82.18 -0.56 3.30 16 3 N -0.43 -9.31 8.03 -5.73 -0.05 -9.36 16 4 C 0.23 4.51 6.73 -82.90 -0.56 3.95 16 5 C -0.16 -3.20 5.89 -104.74 -0.62 -3.81 16 6 C -0.04 -0.66 9.41 -39.25 -0.37 -1.02 16 7 C -0.23 -3.54 10.03 -39.59 -0.40 -3.93 16 8 C -0.06 -0.93 10.03 -39.54 -0.40 -1.32 16 9 C -0.24 -4.79 9.16 -39.44 -0.36 -5.15 16 10 C 0.18 4.01 6.65 -38.69 -0.26 3.76 16 11 O -0.11 -2.89 7.58 0.55 0.00 -2.88 16 12 C -0.40 -10.20 9.49 30.89 0.29 -9.91 16 13 H 0.09 2.15 5.21 -52.49 -0.27 1.88 16 14 C 0.05 1.21 5.49 -17.52 -0.10 1.12 16 15 N -0.83 -21.69 13.67 55.48 0.76 -20.93 16 16 Si 0.94 19.11 29.55 -169.99 -5.02 14.09 16 17 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 18 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 19 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 20 C -0.20 -2.98 9.44 -39.17 -0.37 -3.35 16 21 C -0.02 -0.32 9.89 -38.91 -0.38 -0.71 16 22 C -0.14 -2.20 5.75 -106.66 -0.61 -2.81 16 23 C 0.28 4.42 13.81 -22.47 -0.31 4.11 16 24 N -0.44 -7.57 18.54 41.83 0.78 -6.80 16 25 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 26 H 0.11 2.15 8.14 -51.93 -0.42 1.73 16 27 H 0.06 0.94 7.07 -51.93 -0.37 0.57 16 28 H 0.12 1.48 6.17 -52.48 -0.32 1.16 16 29 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 31 H 0.13 2.58 5.64 -52.49 -0.30 2.28 16 32 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 33 H 0.14 1.60 6.17 -52.49 -0.32 1.27 16 34 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 306.09 15.07 4.61 4.61 Total: -1.00 -28.34 306.09 -6.40 -34.74 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -2.83 Total: 3.91 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -4.65 Total: -17.38 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 1.49 Total: -37.09 kcal Atomic # 8 Polarization: -2.89 SS G_CDS: 0.00 Total: -2.88 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.34 -6.40 -34.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585755.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.179 kcal (2) G-P(sol) polarization free energy of solvation -28.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds