Wall clock time and date at job start Tue Mar 31 2020 01:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31513 * 119.65413 * 2 1 4 4 C 1.32826 * 121.76041 * 180.28158 * 3 2 1 5 5 C 1.48052 * 119.56759 * 179.70620 * 4 3 2 6 6 C 1.39430 * 120.17325 * 179.73001 * 5 4 3 7 7 C 1.37942 * 119.94064 * 180.02562 * 6 5 4 8 8 C 1.38497 * 120.28494 * 0.02562 * 7 6 5 9 9 C 1.38086 * 120.35543 * 359.97438 * 8 7 6 10 10 C 1.38780 * 120.05703 * 0.02562 * 9 8 7 11 11 O 1.35608 * 120.14739 * 180.02562 * 10 9 8 12 12 C 1.34807 * 116.99972 * 354.40603 * 11 10 9 13 13 H 1.08002 * 119.99924 * 5.07518 * 12 11 10 14 14 C 1.38672 * 120.00150 * 185.06742 * 12 11 10 15 15 N 1.31539 * 120.00210 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99816 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47169 * 60.00301 * 16 14 12 18 18 H 1.48500 * 109.46684 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46970 * 300.00167 * 16 14 12 20 20 C 1.39608 * 120.85779 * 359.44237 * 4 3 2 21 21 C 1.37969 * 119.22470 * 0.26920 * 20 4 3 22 22 C 1.39704 * 119.65874 * 179.72503 * 2 1 3 23 23 C 1.43204 * 120.45685 * 0.02562 * 22 2 1 24 24 N 3.49046 * 80.29917 * 179.74148 * 2 1 3 25 25 H 1.09000 * 109.47635 * 270.26983 * 1 2 3 26 26 H 1.08995 * 109.47182 * 30.27806 * 1 2 3 27 27 H 1.09004 * 109.46750 * 150.26893 * 1 2 3 28 28 H 1.08008 * 120.02870 * 0.02693 * 6 5 4 29 29 H 1.07998 * 119.86098 * 180.27700 * 7 6 5 30 30 H 1.08005 * 119.82331 * 179.97438 * 8 7 6 31 31 H 1.07993 * 119.96782 * 179.97438 * 9 8 7 32 32 H 0.96993 * 120.00112 * 179.97438 * 15 14 12 33 33 H 1.07997 * 120.38417 * 180.24656 * 20 4 3 34 34 H 1.07994 * 120.81186 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1577 1.1429 0.0000 4 6 3.4850 1.1917 -0.0056 5 6 4.1677 2.5054 -0.0119 6 6 5.5605 2.5714 -0.0121 7 6 6.1916 3.7980 -0.0174 8 6 5.4477 4.9662 -0.0221 9 6 4.0678 4.9148 -0.0220 10 6 3.4179 3.6886 -0.0166 11 8 2.0628 3.6360 -0.0170 12 6 1.4049 4.8074 0.0943 13 1 1.9542 5.7372 0.0961 14 6 0.0227 4.8183 0.2065 15 7 -0.6463 3.6858 0.2047 16 14 -0.8890 6.4416 0.3601 17 1 -0.6197 7.2759 -0.8385 18 1 -2.3473 6.1820 0.4657 19 1 -0.4246 7.1570 1.5757 20 6 4.2447 0.0204 0.0000 21 6 3.6010 -1.1999 0.0058 22 6 2.1983 -1.2140 0.0058 23 6 1.4848 -2.4556 0.0112 24 7 0.9188 -3.4405 0.0155 25 1 -0.3634 0.0048 1.0276 26 1 -0.3633 0.8874 -0.5181 27 1 -0.3633 -0.8924 -0.5097 28 1 6.1446 1.6629 -0.0080 29 1 7.2704 3.8476 -0.0221 30 1 5.9496 5.9226 -0.0259 31 1 3.4939 5.8297 -0.0252 32 1 -1.6130 3.6935 0.2836 33 1 5.3236 0.0691 -0.0005 34 1 4.1633 -2.1219 0.0106 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243585755.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:02 Heat of formation + Delta-G solvation = 53.703035 kcal Electronic energy + Delta-G solvation = -20593.437100 eV Core-core repulsion = 17456.885932 eV Total energy + Delta-G solvation = -3136.551168 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.47583 -40.32508 -38.05125 -37.58647 -34.43499 -34.17043 -33.65778 -31.32576 -30.32853 -28.65366 -27.20147 -25.58627 -23.78746 -22.41120 -22.29990 -19.98603 -19.55602 -18.83512 -17.55049 -17.10722 -16.27076 -15.94264 -15.88639 -15.45860 -15.32394 -15.28285 -14.76914 -14.30881 -14.28865 -14.06532 -14.00193 -13.75993 -13.51857 -13.43698 -13.06959 -12.88101 -12.86823 -12.43446 -12.34372 -12.19210 -12.02320 -11.14571 -10.84676 -10.67575 -10.33208 -10.03480 -9.29262 -8.67334 -8.31325 -5.94943 -0.59971 0.44056 0.73379 0.88708 1.39081 1.48423 1.51853 1.57306 2.03257 2.22667 2.82432 2.82911 3.07871 3.32340 3.40336 3.62344 3.69280 3.79877 4.17143 4.24590 4.33114 4.44784 4.60578 4.68007 4.69517 4.74337 4.75993 4.99293 5.10052 5.17947 5.23183 5.27005 5.37665 5.64003 5.74546 5.81880 5.84067 6.11754 6.30694 6.39729 7.09621 7.28961 7.95068 8.85539 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.012862 B = 0.007202 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.420171 B = 3886.985799 C = 6044.824848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.179 3.821 3 N -0.481 5.481 4 C 0.201 3.799 5 C -0.172 4.172 6 C -0.037 4.037 7 C -0.205 4.205 8 C -0.053 4.053 9 C -0.264 4.264 10 C 0.140 3.860 11 O -0.160 6.160 12 C -0.424 4.424 13 H 0.093 0.907 14 C -0.006 4.006 15 N -0.877 5.877 16 Si 1.004 2.996 17 H -0.263 1.263 18 H -0.275 1.275 19 H -0.264 1.264 20 C -0.177 4.177 21 C -0.007 4.007 22 C -0.123 4.123 23 C 0.293 3.707 24 N -0.458 5.458 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.166 0.834 29 H 0.157 0.843 30 H 0.142 0.858 31 H 0.115 0.885 32 H 0.267 0.733 33 H 0.184 0.816 34 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.349 -3.592 -0.174 12.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.036 3.964 3 N -0.190 5.190 4 C 0.065 3.935 5 C -0.174 4.174 6 C -0.056 4.056 7 C -0.223 4.223 8 C -0.072 4.072 9 C -0.284 4.284 10 C 0.084 3.916 11 O -0.061 6.061 12 C -0.501 4.501 13 H 0.110 0.890 14 C -0.208 4.208 15 N -0.511 5.511 16 Si 0.825 3.175 17 H -0.188 1.188 18 H -0.199 1.199 19 H -0.189 1.189 20 C -0.197 4.197 21 C -0.034 4.034 22 C -0.130 4.130 23 C -0.022 4.022 24 N -0.134 5.134 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.183 0.817 29 H 0.174 0.826 30 H 0.160 0.840 31 H 0.133 0.867 32 H 0.076 0.924 33 H 0.201 0.799 34 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 10.568 -4.613 -0.171 11.532 hybrid contribution -0.531 0.810 0.077 0.972 sum 10.037 -3.803 -0.093 10.733 Atomic orbital electron populations 1.20676 0.89036 1.02868 1.03095 1.21561 0.97281 0.86745 0.90855 1.68040 1.09948 1.28055 1.12990 1.20390 0.88737 0.93838 0.90505 1.18155 0.93606 0.88417 1.17215 1.21296 0.90293 0.99909 0.94057 1.21101 1.00891 0.91279 1.09026 1.21329 0.91974 1.00042 0.93818 1.21279 0.96505 0.96893 1.13673 1.20103 0.85063 0.94289 0.92127 1.84234 1.12967 1.31923 1.76971 1.21775 0.90645 0.84633 1.53037 0.89013 1.26259 0.96173 1.02260 0.96106 1.70209 1.07804 1.27389 1.45737 0.84863 0.77032 0.76280 0.79347 1.18817 1.19948 1.18895 1.22242 1.02999 0.90339 1.04081 1.21813 0.90578 1.00094 0.90906 1.16941 0.94396 0.86636 1.15003 1.25333 0.92520 0.92016 0.92324 1.81214 1.09094 1.12068 1.11036 0.90512 0.91095 0.90469 0.81702 0.82569 0.83976 0.86683 0.92387 0.79893 0.79799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.81 9.77 71.24 0.70 -3.11 16 2 C 0.18 6.88 6.82 42.96 0.29 7.17 16 3 N -0.48 -21.56 8.03 -172.04 -1.38 -22.94 16 4 C 0.20 7.54 6.73 41.93 0.28 7.82 16 5 C -0.17 -6.66 5.89 -19.94 -0.12 -6.78 16 6 C -0.04 -1.03 9.41 22.49 0.21 -0.82 16 7 C -0.20 -5.30 10.03 22.26 0.22 -5.08 16 8 C -0.05 -1.64 10.03 22.30 0.22 -1.42 16 9 C -0.26 -10.89 9.16 22.36 0.20 -10.68 16 10 C 0.14 6.60 6.65 22.85 0.15 6.75 16 11 O -0.16 -9.01 7.58 -20.94 -0.16 -9.17 16 12 C -0.42 -23.73 9.49 67.92 0.64 -23.09 16 13 H 0.09 4.79 5.21 -2.91 -0.02 4.77 16 14 C -0.01 -0.34 5.49 84.84 0.47 0.12 16 15 N -0.88 -50.26 13.67 21.62 0.30 -49.96 16 16 Si 1.00 41.96 29.55 68.60 2.03 43.98 16 17 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 18 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 19 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 20 C -0.18 -4.46 9.44 22.54 0.21 -4.24 16 21 C -0.01 -0.16 9.89 22.70 0.22 0.06 16 22 C -0.12 -3.71 5.75 -21.18 -0.12 -3.83 16 23 C 0.29 8.73 13.81 88.33 1.22 9.95 16 24 N -0.46 -14.77 18.54 19.00 0.35 -14.42 16 25 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 26 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 27 H 0.08 2.55 7.07 -2.39 -0.02 2.53 16 28 H 0.17 2.93 6.17 -2.91 -0.02 2.92 16 29 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 30 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 31 H 0.12 4.92 5.64 -2.91 -0.02 4.90 16 32 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 33 H 0.18 2.87 6.17 -2.91 -0.02 2.85 16 34 H 0.18 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -70.87 306.09 7.11 -63.76 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 1.16 Total: 15.92 kcal Atomic # 6 Polarization: -31.99 SS G_CDS: 4.82 Total: -27.17 kcal Atomic # 7 Polarization: -86.59 SS G_CDS: -0.73 Total: -87.32 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -0.16 Total: -9.17 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Total: -70.87 7.11 -63.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585755.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.462 kcal (2) G-P(sol) polarization free energy of solvation -70.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds