Wall clock time and date at job start Tue Mar 31 2020 01:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39717 * 120.55135 * 2 1 4 4 C 1.43195 * 120.88380 * 359.94782 * 3 2 1 5 5 N 3.49717 * 81.48684 * 359.96885 * 2 1 3 6 6 C 1.40036 * 118.23129 * 179.97438 * 3 2 1 7 7 C 1.38115 * 119.21159 * 359.97438 * 6 3 2 8 8 N 1.31735 * 121.04358 * 0.02562 * 7 6 3 9 9 C 1.32702 * 121.94924 * 0.02562 * 8 7 6 10 10 C 1.48261 * 119.66490 * 179.97438 * 9 8 7 11 11 C 1.39473 * 120.05137 * 144.72038 * 10 9 8 12 12 C 1.37814 * 119.94031 * 179.79036 * 11 10 9 13 13 C 1.39018 * 120.06008 * 0.48895 * 12 11 10 14 14 O 1.35669 * 119.95038 * 179.72457 * 13 12 11 15 15 C 1.34813 * 117.00314 * 174.47489 * 14 13 12 16 16 H 1.08006 * 119.99791 * 5.05262 * 15 14 13 17 17 C 1.38662 * 119.99998 * 185.05526 * 15 14 13 18 18 N 1.31544 * 120.00294 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99858 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47213 * 89.99969 * 19 17 15 21 21 H 1.48498 * 109.46781 * 210.00091 * 19 17 15 22 22 H 1.48502 * 109.46872 * 329.99912 * 19 17 15 23 23 C 1.39022 * 120.10280 * 359.74303 * 13 12 11 24 24 C 1.37806 * 120.05592 * 0.02562 * 23 13 12 25 25 H 1.08999 * 109.47732 * 270.02470 * 1 2 3 26 26 H 1.08999 * 109.47296 * 30.03070 * 1 2 3 27 27 H 1.09007 * 109.47178 * 150.02309 * 1 2 3 28 28 H 1.08003 * 120.39604 * 179.97438 * 6 3 2 29 29 H 1.08001 * 119.48214 * 180.02562 * 7 6 3 30 30 H 1.07993 * 120.02922 * 0.02789 * 11 10 9 31 31 H 1.08009 * 119.97187 * 180.23382 * 12 11 10 32 32 H 0.96999 * 120.00515 * 179.97438 * 18 17 15 33 33 H 1.08004 * 119.96752 * 179.97438 * 23 13 12 34 34 H 1.08006 * 120.02932 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2172 1.2032 0.0000 4 6 1.5325 2.4609 -0.0011 5 7 0.9893 3.4586 -0.0019 6 6 3.6164 1.1465 0.0006 7 6 4.2411 -0.0853 0.0016 8 7 3.5417 -1.2017 0.0016 9 6 2.2147 -1.1990 0.0001 10 6 1.4784 -2.4858 -0.0004 11 6 0.2753 -2.6023 0.6955 12 6 -0.4095 -3.7983 0.6899 13 6 0.1030 -4.8909 -0.0001 14 8 -0.5702 -6.0688 0.0005 15 6 -0.0810 -7.0538 -0.7792 16 1 0.8525 -6.9138 -1.3040 17 6 -0.7765 -8.2465 -0.9075 18 7 -1.9133 -8.4172 -0.2680 19 14 -0.0990 -9.6111 -1.9885 20 1 0.7760 -10.4961 -1.1783 21 1 -1.2233 -10.4039 -2.5477 22 1 0.6889 -9.0180 -3.0988 23 6 1.3044 -4.7786 -0.6905 24 6 1.9905 -3.5834 -0.6919 25 1 -0.3634 0.0004 1.0276 26 1 -0.3634 0.8897 -0.5143 27 1 -0.3634 -0.8902 -0.5135 28 1 4.2001 2.0552 0.0002 29 1 5.3200 -0.1341 0.0025 30 1 -0.1212 -1.7550 1.2351 31 1 -1.3431 -3.8880 1.2255 32 1 -2.4000 -9.2514 -0.3580 33 1 1.7007 -5.6290 -1.2255 34 1 2.9236 -3.4965 -1.2288 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243587077.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:14 Heat of formation + Delta-G solvation = 65.134789 kcal Electronic energy + Delta-G solvation = -19794.876495 eV Core-core repulsion = 16658.821046 eV Total energy + Delta-G solvation = -3136.055450 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.65369 -38.99982 -37.02644 -36.56402 -33.83885 -32.81684 -32.16706 -30.40384 -28.64113 -27.62224 -25.54688 -24.58987 -22.44956 -21.92204 -21.22565 -18.79158 -18.17589 -17.07933 -16.78591 -15.53569 -15.35786 -14.94889 -14.69376 -14.48507 -14.17834 -13.78047 -13.68730 -13.39627 -13.26612 -13.16039 -13.04315 -12.69027 -12.68163 -12.21557 -11.97889 -11.78739 -11.38773 -11.03190 -10.89717 -10.73747 -10.51163 -9.83376 -9.61329 -9.46466 -9.16552 -8.81348 -8.30328 -7.22581 -6.59816 -4.16244 0.47626 0.83304 2.11724 2.18636 2.35553 2.87922 3.06605 3.07532 3.12363 3.51547 3.75747 3.86209 4.21043 4.48111 4.59522 4.65259 4.82281 4.97736 5.10177 5.21074 5.34471 5.43777 5.52008 5.63708 5.67306 5.73339 5.89467 6.03190 6.08876 6.28117 6.41440 6.54385 6.79089 6.92233 7.08901 7.15792 7.22829 7.30018 7.64581 7.85394 7.94108 8.85358 9.52358 10.57097 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.035322 B = 0.003451 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.511881 B = 8110.968553 C = 8667.712746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.091 4.091 3 C 0.014 3.986 4 C 0.261 3.739 5 N -0.410 5.410 6 C -0.149 4.149 7 C 0.105 3.895 8 N -0.465 5.465 9 C 0.214 3.786 10 C -0.168 4.168 11 C -0.053 4.053 12 C -0.198 4.198 13 C 0.167 3.833 14 O -0.166 6.166 15 C -0.392 4.392 16 H 0.096 0.904 17 C 0.041 3.959 18 N -0.855 5.855 19 Si 0.943 3.057 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.265 1.265 23 C -0.242 4.242 24 C -0.021 4.021 25 H 0.082 0.918 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.140 0.860 29 H 0.163 0.837 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.273 0.727 33 H 0.131 0.869 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.676 13.004 -0.282 15.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.096 4.096 3 C 0.003 3.997 4 C -0.055 4.055 5 N -0.085 5.085 6 C -0.172 4.172 7 C -0.053 4.053 8 N -0.174 5.174 9 C 0.079 3.921 10 C -0.170 4.170 11 C -0.072 4.072 12 C -0.217 4.217 13 C 0.111 3.889 14 O -0.068 6.068 15 C -0.468 4.468 16 H 0.114 0.886 17 C -0.164 4.164 18 N -0.488 5.488 19 Si 0.767 3.233 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.190 1.190 23 C -0.261 4.261 24 C -0.040 4.040 25 H 0.100 0.900 26 H 0.080 0.920 27 H 0.115 0.885 28 H 0.158 0.842 29 H 0.180 0.820 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.083 0.917 33 H 0.149 0.851 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.883 13.462 -0.143 15.601 hybrid contribution 0.303 -0.184 -0.521 0.630 sum 8.186 13.278 -0.664 15.612 Atomic orbital electron populations 1.21191 0.89711 1.04135 1.03052 1.20909 0.97669 0.91508 0.99543 1.16049 0.92657 0.86433 1.04514 1.25483 0.93355 0.92639 0.93993 1.81257 1.08189 1.11064 1.08034 1.22086 0.92496 1.00463 1.02132 1.22682 1.00500 0.86751 0.95346 1.67753 1.07657 1.31066 1.10895 1.19742 0.88298 0.91950 0.92157 1.17775 0.97803 0.91765 1.09672 1.20937 0.92999 0.96614 0.96626 1.20114 1.02664 0.91597 1.07349 1.19539 0.90554 0.86691 0.92142 1.83941 1.48181 1.17077 1.57566 1.21436 1.07468 0.92437 1.25469 0.88622 1.25356 0.95432 0.98034 0.97618 1.70026 1.13510 1.26160 1.39149 0.85673 0.78526 0.79687 0.79388 1.19696 1.20135 1.18979 1.21122 0.97955 0.98993 1.08053 1.20775 0.97126 0.91029 0.95074 0.89974 0.91955 0.88545 0.84236 0.81972 0.85906 0.86021 0.91718 0.85143 0.86634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 7.77 36.01 0.28 -1.09 16 2 C -0.09 -1.12 5.91 -103.70 -0.61 -1.73 16 3 C 0.01 0.15 5.75 -106.75 -0.61 -0.46 16 4 C 0.26 3.00 13.99 -22.47 -0.31 2.68 16 5 N -0.41 -5.39 18.54 41.84 0.78 -4.61 16 6 C -0.15 -1.34 9.86 -38.95 -0.38 -1.72 16 7 C 0.10 1.04 11.16 -17.64 -0.20 0.84 16 8 N -0.47 -6.32 9.94 -9.86 -0.10 -6.42 16 9 C 0.21 3.05 6.47 -83.00 -0.54 2.51 16 10 C -0.17 -2.76 5.36 -104.86 -0.56 -3.32 16 11 C -0.05 -0.85 7.55 -39.28 -0.30 -1.15 16 12 C -0.20 -3.80 9.98 -39.45 -0.39 -4.20 16 13 C 0.17 3.75 6.65 -39.00 -0.26 3.49 16 14 O -0.17 -4.47 9.75 0.35 0.00 -4.46 16 15 C -0.39 -10.37 9.48 30.89 0.29 -10.08 16 16 H 0.10 2.33 5.19 -52.48 -0.27 2.05 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -23.94 13.67 55.48 0.76 -23.18 16 19 Si 0.94 19.52 29.55 -169.99 -5.02 14.50 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 21 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 23 C -0.24 -4.93 9.15 -39.45 -0.36 -5.29 16 24 C -0.02 -0.37 9.57 -39.28 -0.38 -0.75 16 25 H 0.08 0.80 7.07 -51.93 -0.37 0.44 16 26 H 0.06 0.65 7.18 -51.93 -0.37 0.28 16 27 H 0.10 1.15 5.88 -51.93 -0.31 0.85 16 28 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 29 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.12 1.61 5.23 -52.49 -0.27 1.33 16 31 H 0.12 2.23 8.06 -52.48 -0.42 1.81 16 32 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.13 2.66 5.62 -52.48 -0.30 2.36 16 34 H 0.12 1.87 7.95 -52.48 -0.42 1.45 16 LS Contribution 303.53 15.07 4.57 4.57 Total: -1.00 -29.63 303.53 -6.15 -35.78 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -2.71 Total: 3.11 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -4.43 Total: -19.28 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 1.44 Total: -34.22 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: 0.00 Total: -4.46 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.63 -6.15 -35.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587077.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.916 kcal (2) G-P(sol) polarization free energy of solvation -29.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds