Wall clock time and date at job start Tue Mar 31 2020 01:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39717 * 120.55135 * 2 1 4 4 C 1.43195 * 120.88380 * 359.94782 * 3 2 1 5 5 N 3.49717 * 81.48684 * 359.96885 * 2 1 3 6 6 C 1.40036 * 118.23129 * 179.97438 * 3 2 1 7 7 C 1.38115 * 119.21159 * 359.97438 * 6 3 2 8 8 N 1.31735 * 121.04358 * 0.02562 * 7 6 3 9 9 C 1.32702 * 121.94924 * 0.02562 * 8 7 6 10 10 C 1.48261 * 119.66490 * 179.97438 * 9 8 7 11 11 C 1.39473 * 120.05137 * 144.72038 * 10 9 8 12 12 C 1.37814 * 119.94031 * 179.79036 * 11 10 9 13 13 C 1.39018 * 120.06008 * 0.48895 * 12 11 10 14 14 O 1.35669 * 119.95038 * 179.72457 * 13 12 11 15 15 C 1.34813 * 117.00314 * 174.47489 * 14 13 12 16 16 H 1.08006 * 119.99791 * 5.05262 * 15 14 13 17 17 C 1.38662 * 119.99998 * 185.05526 * 15 14 13 18 18 N 1.31544 * 120.00294 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99858 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47213 * 89.99969 * 19 17 15 21 21 H 1.48498 * 109.46781 * 210.00091 * 19 17 15 22 22 H 1.48502 * 109.46872 * 329.99912 * 19 17 15 23 23 C 1.39022 * 120.10280 * 359.74303 * 13 12 11 24 24 C 1.37806 * 120.05592 * 0.02562 * 23 13 12 25 25 H 1.08999 * 109.47732 * 270.02470 * 1 2 3 26 26 H 1.08999 * 109.47296 * 30.03070 * 1 2 3 27 27 H 1.09007 * 109.47178 * 150.02309 * 1 2 3 28 28 H 1.08003 * 120.39604 * 179.97438 * 6 3 2 29 29 H 1.08001 * 119.48214 * 180.02562 * 7 6 3 30 30 H 1.07993 * 120.02922 * 0.02789 * 11 10 9 31 31 H 1.08009 * 119.97187 * 180.23382 * 12 11 10 32 32 H 0.96999 * 120.00515 * 179.97438 * 18 17 15 33 33 H 1.08004 * 119.96752 * 179.97438 * 23 13 12 34 34 H 1.08006 * 120.02932 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2172 1.2032 0.0000 4 6 1.5325 2.4609 -0.0011 5 7 0.9893 3.4586 -0.0019 6 6 3.6164 1.1465 0.0006 7 6 4.2411 -0.0853 0.0016 8 7 3.5417 -1.2017 0.0016 9 6 2.2147 -1.1990 0.0001 10 6 1.4784 -2.4858 -0.0004 11 6 0.2753 -2.6023 0.6955 12 6 -0.4095 -3.7983 0.6899 13 6 0.1030 -4.8909 -0.0001 14 8 -0.5702 -6.0688 0.0005 15 6 -0.0810 -7.0538 -0.7792 16 1 0.8525 -6.9138 -1.3040 17 6 -0.7765 -8.2465 -0.9075 18 7 -1.9133 -8.4172 -0.2680 19 14 -0.0990 -9.6111 -1.9885 20 1 0.7760 -10.4961 -1.1783 21 1 -1.2233 -10.4039 -2.5477 22 1 0.6889 -9.0180 -3.0988 23 6 1.3044 -4.7786 -0.6905 24 6 1.9905 -3.5834 -0.6919 25 1 -0.3634 0.0004 1.0276 26 1 -0.3634 0.8897 -0.5143 27 1 -0.3634 -0.8902 -0.5135 28 1 4.2001 2.0552 0.0002 29 1 5.3200 -0.1341 0.0025 30 1 -0.1212 -1.7550 1.2351 31 1 -1.3431 -3.8880 1.2255 32 1 -2.4000 -9.2514 -0.3580 33 1 1.7007 -5.6290 -1.2255 34 1 2.9236 -3.4965 -1.2288 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243587077.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:13 Heat of formation + Delta-G solvation = 47.947557 kcal Electronic energy + Delta-G solvation = -19795.621790 eV Core-core repulsion = 16658.821046 eV Total energy + Delta-G solvation = -3136.800744 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.68480 -40.56786 -38.31794 -37.77333 -34.85060 -34.37823 -33.51016 -31.88196 -29.97717 -28.64055 -27.31176 -25.68289 -23.58143 -23.39663 -22.48172 -20.01000 -19.74008 -18.77739 -17.78883 -16.70375 -16.36833 -16.24286 -16.16360 -15.83321 -15.53282 -15.35910 -14.87469 -14.48867 -14.47072 -14.19960 -14.14693 -14.05885 -13.70759 -13.51801 -13.36543 -13.09224 -12.92571 -12.51178 -12.30396 -12.16071 -12.04500 -11.20772 -10.90297 -10.69128 -10.52091 -10.03956 -9.78285 -8.75869 -8.47749 -6.14652 -0.44169 -0.14373 0.61536 0.81073 1.37842 1.44919 1.46389 1.54819 1.94046 2.18461 2.59269 2.71951 2.93478 3.16524 3.29459 3.49011 3.68851 3.76773 3.90849 4.15466 4.18407 4.41874 4.49045 4.51043 4.61651 4.65431 4.72075 4.84557 4.94615 5.08589 5.16351 5.17063 5.27672 5.45432 5.66325 5.70910 5.71813 6.02194 6.12744 6.26688 6.97064 6.99789 7.75172 8.74654 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.035322 B = 0.003451 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.511881 B = 8110.968553 C = 8667.712746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.086 4.086 3 C 0.009 3.991 4 C 0.281 3.719 5 N -0.438 5.438 6 C -0.115 4.115 7 C 0.105 3.895 8 N -0.484 5.484 9 C 0.183 3.817 10 C -0.140 4.140 11 C -0.043 4.043 12 C -0.204 4.204 13 C 0.130 3.870 14 O -0.223 6.223 15 C -0.414 4.414 16 H 0.104 0.896 17 C -0.019 4.019 18 N -0.917 5.917 19 Si 1.017 2.983 20 H -0.263 1.263 21 H -0.272 1.272 22 H -0.252 1.252 23 C -0.247 4.247 24 C -0.027 4.027 25 H 0.098 0.902 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.179 0.821 29 H 0.201 0.799 30 H 0.160 0.840 31 H 0.124 0.876 32 H 0.274 0.726 33 H 0.123 0.877 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.612 16.358 -0.597 20.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.091 4.091 3 C -0.002 4.002 4 C -0.034 4.034 5 N -0.114 5.114 6 C -0.137 4.137 7 C -0.053 4.053 8 N -0.193 5.193 9 C 0.048 3.952 10 C -0.142 4.142 11 C -0.061 4.061 12 C -0.223 4.223 13 C 0.078 3.922 14 O -0.128 6.128 15 C -0.490 4.490 16 H 0.122 0.878 17 C -0.218 4.218 18 N -0.554 5.554 19 Si 0.836 3.164 20 H -0.188 1.188 21 H -0.197 1.197 22 H -0.176 1.176 23 C -0.266 4.266 24 C -0.046 4.046 25 H 0.116 0.884 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.197 0.803 29 H 0.218 0.782 30 H 0.177 0.823 31 H 0.142 0.858 32 H 0.083 0.917 33 H 0.140 0.860 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 10.850 16.877 -0.456 20.069 hybrid contribution -0.311 -0.595 -0.355 0.759 sum 10.540 16.282 -0.811 19.413 Atomic orbital electron populations 1.21229 0.89297 1.03933 1.03994 1.20880 0.98024 0.91355 0.98856 1.16087 0.93498 0.85486 1.05110 1.25412 0.92669 0.92283 0.93070 1.81304 1.08932 1.12078 1.09112 1.22568 0.91733 1.01754 0.97600 1.23328 1.02029 0.85883 0.94088 1.67663 1.07395 1.33344 1.10904 1.19374 0.88931 0.91123 0.95808 1.18151 0.97136 0.92517 1.06360 1.21291 0.92578 0.96273 0.95956 1.20379 1.03163 0.91887 1.06877 1.20068 0.91552 0.86724 0.93827 1.83920 1.50243 1.18649 1.60036 1.21862 1.08035 0.93095 1.26024 0.87832 1.26565 0.95678 1.00452 0.99056 1.70165 1.15727 1.27167 1.42340 0.84610 0.77974 0.76187 0.77638 1.18826 1.19671 1.17579 1.21183 0.97628 0.99983 1.07849 1.20971 0.97675 0.90449 0.95488 0.88406 0.91232 0.89729 0.80345 0.78240 0.82278 0.85843 0.91731 0.85964 0.84799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 7.77 71.24 0.55 -1.90 16 2 C -0.09 -1.80 5.91 -19.27 -0.11 -1.91 16 3 C 0.01 0.16 5.75 -21.24 -0.12 0.03 16 4 C 0.28 5.36 13.99 88.33 1.24 6.59 16 5 N -0.44 -10.18 18.54 19.00 0.35 -9.83 16 6 C -0.11 -1.37 9.86 22.68 0.22 -1.15 16 7 C 0.10 1.50 11.16 84.68 0.95 2.45 16 8 N -0.48 -11.26 9.94 -185.10 -1.84 -13.10 16 9 C 0.18 4.62 6.47 41.92 0.27 4.89 16 10 C -0.14 -4.35 5.36 -20.02 -0.11 -4.46 16 11 C -0.04 -1.32 7.55 22.47 0.17 -1.15 16 12 C -0.20 -8.04 9.98 22.36 0.22 -7.82 16 13 C 0.13 6.17 6.65 22.65 0.15 6.32 16 14 O -0.22 -12.92 9.75 -21.67 -0.21 -13.13 16 15 C -0.41 -23.38 9.48 67.92 0.64 -22.73 16 16 H 0.10 5.35 5.19 -2.91 -0.02 5.34 16 17 C -0.02 -1.07 5.49 84.84 0.47 -0.60 16 18 N -0.92 -54.85 13.67 21.61 0.30 -54.56 16 19 Si 1.02 41.70 29.55 68.60 2.03 43.72 16 20 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 21 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 22 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 23 C -0.25 -10.43 9.15 22.36 0.20 -10.22 16 24 C -0.03 -0.94 9.57 22.47 0.21 -0.73 16 25 H 0.10 1.57 7.07 -2.39 -0.02 1.55 16 26 H 0.07 1.25 7.18 -2.39 -0.02 1.23 16 27 H 0.08 1.84 5.88 -2.38 -0.01 1.83 16 28 H 0.18 0.86 8.06 -2.91 -0.02 0.83 16 29 H 0.20 1.35 8.06 -2.91 -0.02 1.33 16 30 H 0.16 3.73 5.23 -2.91 -0.02 3.71 16 31 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 32 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 33 H 0.12 5.25 5.62 -2.91 -0.02 5.23 16 34 H 0.13 4.12 7.95 -2.91 -0.02 4.10 16 Total: -1.00 -70.48 303.53 6.75 -63.73 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 1.16 Total: 15.54 kcal Atomic # 6 Polarization: -37.34 SS G_CDS: 4.96 Total: -32.38 kcal Atomic # 7 Polarization: -76.29 SS G_CDS: -1.19 Total: -77.49 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.21 Total: -13.13 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Total: -70.48 6.75 -63.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587077.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.680 kcal (2) G-P(sol) polarization free energy of solvation -70.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds