Wall clock time and date at job start Tue Mar 31 2020 01:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38429 * 120.35514 * 2 1 4 4 C 1.38622 * 118.60837 * 179.97438 * 3 2 1 5 5 C 1.39484 * 119.26521 * 0.02562 * 4 3 2 6 6 C 1.43197 * 119.67427 * 180.02562 * 5 4 3 7 7 N 4.79774 * 134.90690 * 359.97438 * 3 1 2 8 8 N 1.32698 * 120.65457 * 359.97438 * 5 4 3 9 9 C 1.32437 * 121.50006 * 359.70197 * 8 5 4 10 10 C 1.48260 * 119.65899 * 180.28825 * 9 8 5 11 11 C 1.39473 * 120.05101 * 44.21659 * 10 9 8 12 12 C 1.37816 * 119.94170 * 179.81303 * 11 10 9 13 13 C 1.39021 * 120.05372 * 0.44003 * 12 11 10 14 14 O 1.35677 * 119.94430 * 179.77109 * 13 12 11 15 15 C 1.34811 * 117.00107 * 185.67692 * 14 13 12 16 16 H 1.08005 * 119.99782 * 354.93171 * 15 14 13 17 17 C 1.38661 * 120.00184 * 174.93010 * 15 14 13 18 18 N 1.31553 * 119.99835 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99945 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46883 * 60.00039 * 19 17 15 21 21 H 1.48495 * 109.46846 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46990 * 299.99995 * 19 17 15 23 23 C 1.39014 * 120.10957 * 359.78617 * 13 12 11 24 24 C 1.37817 * 120.05088 * 0.02562 * 23 13 12 25 25 H 1.09000 * 109.47064 * 85.60419 * 1 2 3 26 26 H 1.09002 * 109.47229 * 325.60051 * 1 2 3 27 27 H 1.09004 * 109.46912 * 205.59686 * 1 2 3 28 28 H 1.07997 * 120.69769 * 0.02562 * 3 2 1 29 29 H 1.07997 * 120.36782 * 179.97438 * 4 3 2 30 30 H 1.07998 * 120.02940 * 0.02562 * 11 10 9 31 31 H 1.07999 * 119.96767 * 180.18751 * 12 11 10 32 32 H 0.97000 * 119.99777 * 179.97438 * 18 17 15 33 33 H 1.07994 * 119.97637 * 179.97438 * 23 13 12 34 34 H 1.08006 * 120.02233 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2066 1.1945 0.0000 4 6 3.5922 1.1523 0.0005 5 6 4.2367 -0.0848 0.0005 6 6 5.6676 -0.1386 0.0016 7 7 6.8028 -0.1813 0.0015 8 7 3.5369 -1.2122 0.0005 9 6 2.2125 -1.2047 0.0064 10 6 1.4716 -2.4888 0.0126 11 6 1.8757 -3.5243 0.8551 12 6 1.1830 -4.7157 0.8618 13 6 0.0878 -4.8891 0.0232 14 8 -0.5897 -6.0645 0.0283 15 6 -1.5665 -6.2120 -0.8891 16 1 -1.8342 -5.3852 -1.5305 17 6 -2.2273 -7.4250 -1.0094 18 7 -1.9009 -8.4321 -0.2286 19 14 -3.5803 -7.6295 -2.2812 20 1 -3.0256 -7.3871 -3.6372 21 1 -4.1234 -9.0096 -2.2085 22 1 -4.6667 -6.6544 -2.0092 23 6 -0.3140 -3.8601 -0.8208 24 6 0.3731 -2.6655 -0.8283 25 1 -0.3633 0.0788 -1.0246 26 1 -0.3634 0.8480 0.5806 27 1 -0.3633 -0.9268 0.4440 28 1 1.6839 2.1396 0.0004 29 1 4.1663 2.0670 0.0001 30 1 2.7286 -3.3914 1.5041 31 1 1.4937 -5.5167 1.5162 32 1 -2.3634 -9.2806 -0.3125 33 1 -1.1648 -3.9973 -1.4717 34 1 0.0608 -1.8666 -1.4846 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243587363.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:16 Heat of formation + Delta-G solvation = 62.707074 kcal Electronic energy + Delta-G solvation = -19739.813725 eV Core-core repulsion = 16603.653001 eV Total energy + Delta-G solvation = -3136.160723 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.63541 -39.00645 -36.99353 -36.33422 -33.86479 -32.79683 -32.14877 -30.35596 -28.73680 -27.89210 -25.61552 -23.77823 -22.92400 -22.00833 -21.05160 -19.11519 -18.12945 -17.33734 -16.51475 -15.47133 -15.37974 -14.99092 -14.63754 -14.43026 -13.91769 -13.82953 -13.66749 -13.50304 -13.25475 -12.97878 -12.87923 -12.63409 -12.37745 -12.33947 -12.08648 -11.78819 -11.39135 -11.11003 -10.91144 -10.79694 -10.53796 -9.97117 -9.64947 -9.49402 -9.10928 -8.80948 -8.31199 -7.25298 -6.58600 -4.15991 0.45118 0.97790 2.09999 2.14085 2.42201 2.78326 3.05969 3.07807 3.10509 3.43440 3.80077 3.86199 4.37798 4.48658 4.59384 4.73160 4.84088 4.97533 5.08473 5.16132 5.29843 5.48860 5.57556 5.61370 5.68726 5.77698 5.97602 6.05608 6.08485 6.28915 6.40257 6.55772 6.75260 6.92658 7.10996 7.17268 7.24012 7.29738 7.64418 7.78752 7.85888 8.86139 9.53703 10.58361 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.029728 B = 0.003535 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.646046 B = 7918.393305 C = 8494.055019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.105 4.105 3 C -0.076 4.076 4 C -0.135 4.135 5 C 0.182 3.818 6 C 0.274 3.726 7 N -0.402 5.402 8 N -0.448 5.448 9 C 0.214 3.786 10 C -0.166 4.166 11 C -0.030 4.030 12 C -0.198 4.198 13 C 0.167 3.833 14 O -0.167 6.167 15 C -0.394 4.394 16 H 0.095 0.905 17 C 0.041 3.959 18 N -0.856 5.856 19 Si 0.943 3.057 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.268 1.268 23 C -0.239 4.239 24 C -0.041 4.041 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.143 0.857 29 H 0.140 0.860 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.273 0.727 33 H 0.132 0.868 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.072 17.395 -0.350 17.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.108 4.108 3 C -0.101 4.101 4 C -0.158 4.158 5 C 0.043 3.957 6 C -0.043 4.043 7 N -0.079 5.079 8 N -0.158 5.158 9 C 0.076 3.924 10 C -0.168 4.168 11 C -0.049 4.049 12 C -0.217 4.217 13 C 0.111 3.889 14 O -0.069 6.069 15 C -0.470 4.470 16 H 0.113 0.887 17 C -0.164 4.164 18 N -0.489 5.489 19 Si 0.767 3.233 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.193 1.193 23 C -0.259 4.259 24 C -0.060 4.060 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.107 0.893 28 H 0.161 0.839 29 H 0.158 0.842 30 H 0.134 0.866 31 H 0.139 0.861 32 H 0.083 0.917 33 H 0.149 0.851 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.215 16.045 -0.171 16.590 hybrid contribution -1.407 0.693 -0.695 1.716 sum 2.808 16.738 -0.866 16.994 Atomic orbital electron populations 1.21039 0.89570 1.04297 1.02804 1.21164 0.98169 0.92922 0.98536 1.21344 0.93130 0.98427 0.97212 1.21878 0.95291 0.97422 1.01242 1.16286 0.85942 0.90254 1.03204 1.25108 0.91807 0.93452 0.93908 1.81223 1.11737 1.07058 1.07863 1.67713 1.08445 1.28650 1.11008 1.19758 0.87087 0.92908 0.92683 1.17745 1.00236 0.92736 1.06053 1.20641 0.96796 0.91100 0.96329 1.20164 0.97873 0.98812 1.04856 1.19517 0.90264 0.86672 0.92469 1.83953 1.42950 1.29573 1.50374 1.21361 1.12079 0.99255 1.14278 0.88735 1.25352 0.98741 0.94200 0.98138 1.70025 1.39881 1.02681 1.36300 0.85748 0.79658 0.78157 0.79735 1.19334 1.20178 1.19326 1.21050 1.04847 0.94155 1.05811 1.20788 0.93039 0.96342 0.95827 0.90403 0.91329 0.89323 0.83883 0.84180 0.86554 0.86100 0.91679 0.85061 0.86815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 8.34 36.01 0.30 -0.81 16 2 C -0.10 -1.15 5.88 -104.04 -0.61 -1.76 16 3 C -0.08 -0.64 9.85 -39.37 -0.39 -1.03 16 4 C -0.14 -1.23 9.79 -38.98 -0.38 -1.61 16 5 C 0.18 2.26 6.58 -85.10 -0.56 1.70 16 6 C 0.27 3.63 15.53 -22.47 -0.35 3.28 16 7 N -0.40 -5.90 18.54 41.84 0.78 -5.13 16 8 N -0.45 -6.72 10.07 -7.72 -0.08 -6.79 16 9 C 0.21 3.06 6.36 -82.97 -0.53 2.54 16 10 C -0.17 -2.73 5.06 -104.86 -0.53 -3.26 16 11 C -0.03 -0.52 9.64 -39.28 -0.38 -0.90 16 12 C -0.20 -3.98 9.98 -39.45 -0.39 -4.38 16 13 C 0.17 3.76 6.65 -39.00 -0.26 3.50 16 14 O -0.17 -4.51 9.75 0.33 0.00 -4.50 16 15 C -0.39 -10.38 9.48 30.89 0.29 -10.08 16 16 H 0.10 2.26 5.19 -52.48 -0.27 1.98 16 17 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 18 N -0.86 -24.06 13.67 55.48 0.76 -23.30 16 19 Si 0.94 19.41 29.55 -169.99 -5.02 14.39 16 20 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 21 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 23 C -0.24 -4.70 9.15 -39.45 -0.36 -5.07 16 24 C -0.04 -0.67 7.60 -39.28 -0.30 -0.97 16 25 H 0.08 0.63 7.52 -51.93 -0.39 0.24 16 26 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 27 H 0.09 1.00 5.89 -51.93 -0.31 0.69 16 28 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 29 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 30 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 32 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 33 H 0.13 2.55 5.62 -52.49 -0.30 2.25 16 34 H 0.11 1.52 6.33 -52.48 -0.33 1.19 16 LS Contribution 307.49 15.07 4.63 4.63 Total: -1.00 -30.06 307.49 -6.32 -36.37 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -2.84 Total: 2.20 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -4.54 Total: -17.87 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 1.46 Total: -35.23 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: 0.00 Total: -4.50 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.06 -6.32 -36.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587363.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.081 kcal (2) G-P(sol) polarization free energy of solvation -30.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds