Wall clock time and date at job start Tue Mar 31 2020 01:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38429 * 120.35514 * 2 1 4 4 C 1.38622 * 118.60837 * 179.97438 * 3 2 1 5 5 C 1.39484 * 119.26521 * 0.02562 * 4 3 2 6 6 C 1.43197 * 119.67427 * 180.02562 * 5 4 3 7 7 N 4.79774 * 134.90690 * 359.97438 * 3 1 2 8 8 N 1.32698 * 120.65457 * 359.97438 * 5 4 3 9 9 C 1.32437 * 121.50006 * 359.70197 * 8 5 4 10 10 C 1.48260 * 119.65899 * 180.28825 * 9 8 5 11 11 C 1.39473 * 120.05101 * 44.21659 * 10 9 8 12 12 C 1.37816 * 119.94170 * 179.81303 * 11 10 9 13 13 C 1.39021 * 120.05372 * 0.44003 * 12 11 10 14 14 O 1.35677 * 119.94430 * 179.77109 * 13 12 11 15 15 C 1.34811 * 117.00107 * 185.67692 * 14 13 12 16 16 H 1.08005 * 119.99782 * 354.93171 * 15 14 13 17 17 C 1.38661 * 120.00184 * 174.93010 * 15 14 13 18 18 N 1.31553 * 119.99835 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99945 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46883 * 60.00039 * 19 17 15 21 21 H 1.48495 * 109.46846 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46990 * 299.99995 * 19 17 15 23 23 C 1.39014 * 120.10957 * 359.78617 * 13 12 11 24 24 C 1.37817 * 120.05088 * 0.02562 * 23 13 12 25 25 H 1.09000 * 109.47064 * 85.60419 * 1 2 3 26 26 H 1.09002 * 109.47229 * 325.60051 * 1 2 3 27 27 H 1.09004 * 109.46912 * 205.59686 * 1 2 3 28 28 H 1.07997 * 120.69769 * 0.02562 * 3 2 1 29 29 H 1.07997 * 120.36782 * 179.97438 * 4 3 2 30 30 H 1.07998 * 120.02940 * 0.02562 * 11 10 9 31 31 H 1.07999 * 119.96767 * 180.18751 * 12 11 10 32 32 H 0.97000 * 119.99777 * 179.97438 * 18 17 15 33 33 H 1.07994 * 119.97637 * 179.97438 * 23 13 12 34 34 H 1.08006 * 120.02233 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2066 1.1945 0.0000 4 6 3.5922 1.1523 0.0005 5 6 4.2367 -0.0848 0.0005 6 6 5.6676 -0.1386 0.0016 7 7 6.8028 -0.1813 0.0015 8 7 3.5369 -1.2122 0.0005 9 6 2.2125 -1.2047 0.0064 10 6 1.4716 -2.4888 0.0126 11 6 1.8757 -3.5243 0.8551 12 6 1.1830 -4.7157 0.8618 13 6 0.0878 -4.8891 0.0232 14 8 -0.5897 -6.0645 0.0283 15 6 -1.5665 -6.2120 -0.8891 16 1 -1.8342 -5.3852 -1.5305 17 6 -2.2273 -7.4250 -1.0094 18 7 -1.9009 -8.4321 -0.2286 19 14 -3.5803 -7.6295 -2.2812 20 1 -3.0256 -7.3871 -3.6372 21 1 -4.1234 -9.0096 -2.2085 22 1 -4.6667 -6.6544 -2.0092 23 6 -0.3140 -3.8601 -0.8208 24 6 0.3731 -2.6655 -0.8283 25 1 -0.3633 0.0788 -1.0246 26 1 -0.3634 0.8480 0.5806 27 1 -0.3633 -0.9268 0.4440 28 1 1.6839 2.1396 0.0004 29 1 4.1663 2.0670 0.0001 30 1 2.7286 -3.3914 1.5041 31 1 1.4937 -5.5167 1.5162 32 1 -2.3634 -9.2806 -0.3125 33 1 -1.1648 -3.9973 -1.4717 34 1 0.0608 -1.8666 -1.4846 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243587363.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:15 Heat of formation + Delta-G solvation = 44.723442 kcal Electronic energy + Delta-G solvation = -19740.593553 eV Core-core repulsion = 16603.653001 eV Total energy + Delta-G solvation = -3136.940552 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.65231 -40.58457 -38.37295 -37.58463 -34.81449 -34.35865 -33.46659 -31.85207 -30.05165 -28.81636 -27.42676 -24.94504 -23.79955 -23.52545 -22.38869 -20.16528 -19.86795 -18.92435 -17.67784 -16.66860 -16.39734 -16.22538 -16.11786 -15.74234 -15.53320 -15.26686 -14.78114 -14.56108 -14.47914 -14.24954 -13.96173 -13.86521 -13.55818 -13.33747 -13.27496 -13.12469 -12.87300 -12.52265 -12.38943 -12.19688 -12.12843 -11.20800 -10.89453 -10.70910 -10.59655 -9.96755 -9.80715 -8.81176 -8.46595 -6.14308 -0.44552 0.01741 0.59846 0.78034 1.38626 1.38895 1.49313 1.54943 1.76478 2.19381 2.47635 2.74441 2.93494 3.16592 3.39518 3.50742 3.83623 3.87119 4.04741 4.12593 4.19767 4.26497 4.48419 4.60961 4.70009 4.81612 4.89971 4.97679 4.99321 5.13648 5.24105 5.30030 5.32006 5.49802 5.66499 5.68228 5.70064 6.02222 6.11599 6.23372 6.81046 6.97819 7.76587 8.76008 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.029728 B = 0.003535 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.646046 B = 7918.393305 C = 8494.055019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.092 4.092 3 C -0.061 4.061 4 C -0.103 4.103 5 C 0.158 3.842 6 C 0.290 3.710 7 N -0.437 5.437 8 N -0.480 5.480 9 C 0.178 3.822 10 C -0.137 4.137 11 C -0.035 4.035 12 C -0.209 4.209 13 C 0.130 3.870 14 O -0.226 6.226 15 C -0.415 4.415 16 H 0.110 0.890 17 C -0.022 4.022 18 N -0.920 5.920 19 Si 1.019 2.981 20 H -0.257 1.257 21 H -0.276 1.276 22 H -0.252 1.252 23 C -0.240 4.240 24 C -0.031 4.031 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.064 0.936 28 H 0.192 0.808 29 H 0.179 0.821 30 H 0.130 0.870 31 H 0.113 0.887 32 H 0.273 0.727 33 H 0.132 0.868 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.720 22.691 -1.613 22.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.095 4.095 3 C -0.086 4.086 4 C -0.126 4.126 5 C 0.020 3.980 6 C -0.026 4.026 7 N -0.114 5.114 8 N -0.190 5.190 9 C 0.039 3.961 10 C -0.138 4.138 11 C -0.053 4.053 12 C -0.228 4.228 13 C 0.078 3.922 14 O -0.132 6.132 15 C -0.490 4.490 16 H 0.127 0.873 17 C -0.220 4.220 18 N -0.558 5.558 19 Si 0.838 3.162 20 H -0.181 1.181 21 H -0.201 1.201 22 H -0.176 1.176 23 C -0.259 4.259 24 C -0.050 4.050 25 H 0.115 0.885 26 H 0.117 0.883 27 H 0.082 0.918 28 H 0.210 0.790 29 H 0.196 0.804 30 H 0.148 0.852 31 H 0.131 0.869 32 H 0.082 0.918 33 H 0.150 0.850 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.905 21.411 -1.429 21.811 hybrid contribution -0.978 -0.441 -0.206 1.092 sum 2.927 20.970 -1.635 21.236 Atomic orbital electron populations 1.21131 0.88195 1.04431 1.04311 1.21387 0.99103 0.92461 0.96551 1.21867 0.92697 0.99228 0.94780 1.22353 0.95948 0.97245 0.97022 1.16419 0.85214 0.91060 1.05344 1.25321 0.91996 0.92507 0.92817 1.81242 1.12770 1.08046 1.09367 1.67441 1.09092 1.30774 1.11739 1.19505 0.87157 0.92832 0.96571 1.18132 0.99134 0.93338 1.03245 1.20845 0.96875 0.90660 0.96961 1.20310 0.97903 0.99872 1.04753 1.19998 0.91250 0.86693 0.94239 1.83933 1.44937 1.31938 1.52359 1.21886 1.12337 1.00096 1.14713 0.87292 1.26637 1.01410 0.93572 1.00381 1.70185 1.42569 1.03505 1.39495 0.84639 0.76425 0.78265 0.76881 1.18127 1.20073 1.17641 1.21194 1.05122 0.94576 1.05019 1.21115 0.92248 0.95893 0.95703 0.88524 0.88262 0.91758 0.79042 0.80369 0.85203 0.86907 0.91806 0.85034 0.82797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.63 8.34 71.24 0.59 -1.04 16 2 C -0.09 -1.54 5.88 -19.49 -0.11 -1.66 16 3 C -0.06 -0.61 9.85 22.41 0.22 -0.39 16 4 C -0.10 -1.26 9.79 22.66 0.22 -1.04 16 5 C 0.16 3.39 6.58 40.56 0.27 3.66 16 6 C 0.29 7.09 15.53 88.33 1.37 8.46 16 7 N -0.44 -12.31 18.54 19.00 0.35 -11.95 16 8 N -0.48 -13.26 10.07 -178.33 -1.80 -15.06 16 9 C 0.18 4.55 6.36 42.05 0.27 4.82 16 10 C -0.14 -4.29 5.06 -20.02 -0.10 -4.40 16 11 C -0.03 -1.23 9.64 22.47 0.22 -1.02 16 12 C -0.21 -8.92 9.98 22.36 0.22 -8.69 16 13 C 0.13 6.20 6.65 22.64 0.15 6.36 16 14 O -0.23 -13.18 9.75 -21.74 -0.21 -13.39 16 15 C -0.41 -23.10 9.48 67.92 0.64 -22.45 16 16 H 0.11 5.40 5.19 -2.91 -0.02 5.39 16 17 C -0.02 -1.21 5.49 84.84 0.47 -0.75 16 18 N -0.92 -55.42 13.67 21.61 0.30 -55.12 16 19 Si 1.02 41.03 29.55 68.60 2.03 43.06 16 20 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 21 H -0.28 -10.86 7.11 99.48 0.71 -10.16 16 22 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 23 C -0.24 -9.53 9.15 22.36 0.20 -9.33 16 24 C -0.03 -0.96 7.60 22.46 0.17 -0.79 16 25 H 0.10 0.97 7.52 -2.39 -0.02 0.96 16 26 H 0.10 0.76 8.12 -2.39 -0.02 0.74 16 27 H 0.06 1.21 5.89 -2.39 -0.01 1.19 16 28 H 0.19 0.22 8.06 -2.91 -0.02 0.20 16 29 H 0.18 0.89 8.06 -2.91 -0.02 0.87 16 30 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 31 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 32 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 33 H 0.13 5.15 5.62 -2.91 -0.02 5.13 16 34 H 0.15 3.50 6.33 -2.91 -0.02 3.48 16 Total: -1.00 -73.83 307.49 6.63 -67.21 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 1.16 Total: 13.51 kcal Atomic # 6 Polarization: -33.06 SS G_CDS: 4.80 Total: -28.25 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -1.15 Total: -82.14 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.21 Total: -13.39 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Total: -73.83 6.63 -67.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587363.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.932 kcal (2) G-P(sol) polarization free energy of solvation -73.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds