Wall clock time and date at job start Tue Mar 31 2020 01:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38025 * 120.80300 * 2 1 4 4 C 1.39553 * 119.22143 * 179.97438 * 3 2 1 5 5 C 1.48096 * 119.57185 * 179.97438 * 4 3 2 6 6 C 1.39562 * 120.05714 * 359.75303 * 5 4 3 7 7 C 1.37781 * 119.93628 * 179.71568 * 6 5 4 8 8 C 1.39048 * 120.06002 * 0.57543 * 7 6 5 9 9 O 1.35654 * 119.93870 * 179.70143 * 8 7 6 10 10 C 1.34808 * 116.99913 * 174.43260 * 9 8 7 11 11 H 1.07999 * 120.00226 * 5.05112 * 10 9 8 12 12 C 1.38671 * 120.00093 * 185.05705 * 10 9 8 13 13 N 1.31540 * 120.00477 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99652 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47192 * 90.00320 * 14 12 10 16 16 H 1.48506 * 109.47087 * 210.00115 * 14 12 10 17 17 H 1.48498 * 109.47360 * 329.99833 * 14 12 10 18 18 C 1.39054 * 120.12126 * 359.67631 * 8 7 6 19 19 C 1.37771 * 120.06082 * 0.04507 * 18 8 7 20 20 N 1.32842 * 120.85863 * 0.02562 * 4 3 2 21 21 C 1.31486 * 121.77116 * 359.97438 * 20 4 3 22 22 C 1.39747 * 120.67957 * 0.02562 * 21 20 4 23 23 C 1.43196 * 120.45589 * 180.02562 * 22 21 20 24 24 N 3.49462 * 81.50494 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.47444 * 89.99638 * 1 2 3 26 26 H 1.09001 * 109.47262 * 209.99853 * 1 2 3 27 27 H 1.09002 * 109.47075 * 330.00047 * 1 2 3 28 28 H 1.08002 * 120.39482 * 359.95583 * 3 2 1 29 29 H 1.07997 * 120.03418 * 359.97198 * 6 5 4 30 30 H 1.08001 * 119.96710 * 180.25340 * 7 6 5 31 31 H 0.96996 * 120.00396 * 179.97438 * 13 12 10 32 32 H 1.07994 * 119.97128 * 180.02562 * 18 8 7 33 33 H 1.08003 * 120.03492 * 179.97438 * 19 18 8 34 34 H 1.07997 * 119.66129 * 179.97438 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2138 1.1855 0.0000 4 6 3.6088 1.1470 0.0005 5 6 4.3749 2.4144 0.0000 6 6 3.7028 3.6375 -0.0063 7 6 4.4181 4.8151 -0.0009 8 6 5.8082 4.7857 -0.0013 9 8 6.5100 5.9466 -0.0021 10 6 7.8497 5.8520 0.1141 11 1 8.3241 4.8818 0.1202 12 6 8.6188 7.0005 0.2259 13 7 9.9260 6.9082 0.3398 14 14 7.7984 8.6787 0.2148 15 1 7.4560 9.0715 1.6053 16 1 8.7275 9.6800 -0.3679 17 1 6.5597 8.6187 -0.6020 18 6 6.4805 3.5684 -0.0003 19 6 5.7703 2.3879 0.0001 20 7 4.2584 -0.0117 0.0005 21 6 3.6220 -1.1623 0.0005 22 6 2.2251 -1.2044 0.0000 23 6 1.5368 -2.4601 0.0006 24 7 0.9908 -3.4563 0.0015 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6935 2.1319 -0.0007 29 1 2.6231 3.6610 -0.0112 30 1 3.8984 5.7619 -0.0016 31 1 10.4640 7.7116 0.4176 32 1 7.5602 3.5484 -0.0002 33 1 6.2928 1.4427 0.0004 34 1 4.1844 -2.0842 0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243587419.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:40 Heat of formation + Delta-G solvation = 58.100568 kcal Electronic energy + Delta-G solvation = -19445.368768 eV Core-core repulsion = 16309.008292 eV Total energy + Delta-G solvation = -3136.360476 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.57484 -39.24025 -37.14620 -36.44937 -34.18138 -32.72667 -32.10140 -30.51924 -28.93256 -27.99170 -25.75034 -24.20985 -22.98899 -21.66868 -20.75480 -18.95848 -18.08560 -17.60085 -16.81418 -16.29511 -14.96052 -14.90179 -14.69062 -14.39712 -14.10337 -13.93327 -13.62296 -13.40088 -13.27686 -13.18614 -13.04880 -12.81689 -12.70001 -12.45596 -12.43261 -11.99867 -11.59670 -11.26117 -10.98166 -10.87555 -10.30252 -9.71883 -9.69973 -9.45760 -9.42475 -8.93038 -8.46163 -7.35409 -6.61976 -4.25507 0.28486 1.09354 1.95741 2.03579 2.46171 2.94171 3.11216 3.14950 3.27759 3.68316 3.76254 4.07350 4.20515 4.34882 4.42489 4.43483 4.61546 4.91995 4.94167 5.12116 5.19041 5.22598 5.35136 5.49361 5.62729 5.64155 5.71304 5.95747 5.97629 6.15531 6.31727 6.41806 6.64735 6.87370 7.00323 7.12995 7.28168 7.39208 7.61268 7.82140 7.89776 8.71100 9.30645 10.44130 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.046335 B = 0.003110 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.143642 B = 9001.425498 C = 9586.101941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.015 3.985 3 C -0.189 4.189 4 C 0.244 3.756 5 C -0.172 4.172 6 C -0.043 4.043 7 C -0.198 4.198 8 C 0.176 3.824 9 O -0.201 6.201 10 C -0.390 4.390 11 H 0.112 0.888 12 C 0.066 3.934 13 N -0.866 5.866 14 Si 0.907 3.093 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.258 1.258 18 C -0.233 4.233 19 C -0.016 4.016 20 N -0.494 5.494 21 C 0.174 3.826 22 C -0.129 4.129 23 C 0.269 3.731 24 N -0.430 5.430 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.145 0.855 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.283 0.717 32 H 0.138 0.862 33 H 0.126 0.874 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.284 -8.445 -0.611 16.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.005 3.995 3 C -0.209 4.209 4 C 0.111 3.889 5 C -0.174 4.174 6 C -0.062 4.062 7 C -0.218 4.218 8 C 0.121 3.879 9 O -0.104 6.104 10 C -0.465 4.465 11 H 0.129 0.871 12 C -0.140 4.140 13 N -0.501 5.501 14 Si 0.732 3.268 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.182 1.182 18 C -0.253 4.253 19 C -0.035 4.035 20 N -0.203 5.203 21 C 0.011 3.989 22 C -0.135 4.135 23 C -0.046 4.046 24 N -0.106 5.106 25 H 0.102 0.898 26 H 0.088 0.912 27 H 0.100 0.900 28 H 0.163 0.837 29 H 0.138 0.862 30 H 0.141 0.859 31 H 0.094 0.906 32 H 0.155 0.845 33 H 0.144 0.856 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -14.034 -9.573 -0.605 16.999 hybrid contribution -0.677 0.987 0.020 1.197 sum -14.711 -8.586 -0.584 17.043 Atomic orbital electron populations 1.20932 0.89934 1.03721 1.03445 1.20181 0.96449 0.91262 0.91565 1.21870 0.94437 0.98431 1.06122 1.20104 0.89881 0.91573 0.87345 1.17978 0.93094 0.89459 1.16870 1.20707 0.98529 0.90778 0.96200 1.20106 0.91090 0.98309 1.12268 1.19335 0.91102 0.85878 0.91614 1.83527 1.21570 1.27653 1.77619 1.20893 0.77019 0.97276 1.51298 0.87091 1.24543 0.94738 0.99533 0.95154 1.69628 1.04019 1.31193 1.45292 0.86157 0.79889 0.81375 0.79411 1.19622 1.20524 1.18159 1.21275 1.01423 0.91534 1.11025 1.20992 0.92517 0.97775 0.92216 1.67823 1.39753 0.97432 1.15322 1.22852 0.89123 0.96707 0.90227 1.16869 0.94024 0.86975 1.15609 1.25418 0.93317 0.92589 0.93260 1.81252 1.08430 1.10946 1.09972 0.89834 0.91232 0.90012 0.83733 0.86186 0.85921 0.90622 0.84454 0.85570 0.82032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.67 36.01 0.35 -0.53 16 2 C 0.01 0.14 5.95 -103.95 -0.62 -0.48 16 3 C -0.19 -2.02 9.14 -39.17 -0.36 -2.38 16 4 C 0.24 3.31 6.73 -82.89 -0.56 2.75 16 5 C -0.17 -2.68 5.88 -104.87 -0.62 -3.30 16 6 C -0.04 -0.63 9.41 -39.25 -0.37 -1.00 16 7 C -0.20 -3.45 9.98 -39.45 -0.39 -3.85 16 8 C 0.18 3.69 6.65 -38.98 -0.26 3.43 16 9 O -0.20 -4.88 8.58 0.41 0.00 -4.88 16 10 C -0.39 -10.23 9.94 30.89 0.31 -9.93 16 11 H 0.11 2.97 5.42 -52.49 -0.28 2.69 16 12 C 0.07 1.73 5.49 -17.52 -0.10 1.63 16 13 N -0.87 -23.59 13.96 55.48 0.77 -22.81 16 14 Si 0.91 20.19 28.62 -169.99 -4.86 15.32 16 15 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 16 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 17 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 18 C -0.23 -4.65 9.15 -39.45 -0.36 -5.01 16 19 C -0.02 -0.28 9.56 -39.26 -0.38 -0.65 16 20 N -0.49 -6.66 9.39 -9.45 -0.09 -6.75 16 21 C 0.17 1.89 10.91 -17.14 -0.19 1.70 16 22 C -0.13 -1.33 5.75 -106.66 -0.61 -1.94 16 23 C 0.27 2.97 13.96 -22.47 -0.31 2.65 16 24 N -0.43 -5.51 18.54 41.84 0.78 -4.74 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.52 7.19 -51.93 -0.37 0.15 16 27 H 0.08 0.46 8.10 -51.93 -0.42 0.04 16 28 H 0.15 1.24 6.16 -52.49 -0.32 0.91 16 29 H 0.12 1.31 6.16 -52.49 -0.32 0.99 16 30 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 31 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.14 2.88 5.62 -52.49 -0.30 2.58 16 33 H 0.13 2.04 7.52 -52.48 -0.39 1.64 16 34 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 307.32 15.07 4.63 4.63 Total: -1.00 -28.27 307.32 -6.05 -34.32 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -2.82 Total: 1.80 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -4.46 Total: -16.89 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 1.46 Total: -34.30 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: 0.00 Total: -4.88 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.86 Total: 15.32 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.27 -6.05 -34.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587419.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.417 kcal (2) G-P(sol) polarization free energy of solvation -28.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds