Wall clock time and date at job start Tue Mar 31 2020 01:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38025 * 120.80300 * 2 1 4 4 C 1.39553 * 119.22143 * 179.97438 * 3 2 1 5 5 C 1.48096 * 119.57185 * 179.97438 * 4 3 2 6 6 C 1.39562 * 120.05714 * 359.75303 * 5 4 3 7 7 C 1.37781 * 119.93628 * 179.71568 * 6 5 4 8 8 C 1.39048 * 120.06002 * 0.57543 * 7 6 5 9 9 O 1.35654 * 119.93870 * 179.70143 * 8 7 6 10 10 C 1.34808 * 116.99913 * 174.43260 * 9 8 7 11 11 H 1.07999 * 120.00226 * 5.05112 * 10 9 8 12 12 C 1.38671 * 120.00093 * 185.05705 * 10 9 8 13 13 N 1.31540 * 120.00477 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99652 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47192 * 90.00320 * 14 12 10 16 16 H 1.48506 * 109.47087 * 210.00115 * 14 12 10 17 17 H 1.48498 * 109.47360 * 329.99833 * 14 12 10 18 18 C 1.39054 * 120.12126 * 359.67631 * 8 7 6 19 19 C 1.37771 * 120.06082 * 0.04507 * 18 8 7 20 20 N 1.32842 * 120.85863 * 0.02562 * 4 3 2 21 21 C 1.31486 * 121.77116 * 359.97438 * 20 4 3 22 22 C 1.39747 * 120.67957 * 0.02562 * 21 20 4 23 23 C 1.43196 * 120.45589 * 180.02562 * 22 21 20 24 24 N 3.49462 * 81.50494 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.47444 * 89.99638 * 1 2 3 26 26 H 1.09001 * 109.47262 * 209.99853 * 1 2 3 27 27 H 1.09002 * 109.47075 * 330.00047 * 1 2 3 28 28 H 1.08002 * 120.39482 * 359.95583 * 3 2 1 29 29 H 1.07997 * 120.03418 * 359.97198 * 6 5 4 30 30 H 1.08001 * 119.96710 * 180.25340 * 7 6 5 31 31 H 0.96996 * 120.00396 * 179.97438 * 13 12 10 32 32 H 1.07994 * 119.97128 * 180.02562 * 18 8 7 33 33 H 1.08003 * 120.03492 * 179.97438 * 19 18 8 34 34 H 1.07997 * 119.66129 * 179.97438 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2138 1.1855 0.0000 4 6 3.6088 1.1470 0.0005 5 6 4.3749 2.4144 0.0000 6 6 3.7028 3.6375 -0.0063 7 6 4.4181 4.8151 -0.0009 8 6 5.8082 4.7857 -0.0013 9 8 6.5100 5.9466 -0.0021 10 6 7.8497 5.8520 0.1141 11 1 8.3241 4.8818 0.1202 12 6 8.6188 7.0005 0.2259 13 7 9.9260 6.9082 0.3398 14 14 7.7984 8.6787 0.2148 15 1 7.4560 9.0715 1.6053 16 1 8.7275 9.6800 -0.3679 17 1 6.5597 8.6187 -0.6020 18 6 6.4805 3.5684 -0.0003 19 6 5.7703 2.3879 0.0001 20 7 4.2584 -0.0117 0.0005 21 6 3.6220 -1.1623 0.0005 22 6 2.2251 -1.2044 0.0000 23 6 1.5368 -2.4601 0.0006 24 7 0.9908 -3.4563 0.0015 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6935 2.1319 -0.0007 29 1 2.6231 3.6610 -0.0112 30 1 3.8984 5.7619 -0.0016 31 1 10.4640 7.7116 0.4176 32 1 7.5602 3.5484 -0.0002 33 1 6.2928 1.4427 0.0004 34 1 4.1844 -2.0842 0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243587419.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:39 Heat of formation + Delta-G solvation = 42.488756 kcal Electronic energy + Delta-G solvation = -19446.045747 eV Core-core repulsion = 16309.008292 eV Total energy + Delta-G solvation = -3137.037455 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.58413 -40.72398 -38.45862 -37.57755 -35.03916 -34.51150 -33.28476 -31.91903 -30.14028 -28.82026 -27.43215 -25.35801 -24.15809 -23.00072 -21.95678 -20.05188 -19.65055 -19.18600 -17.81359 -17.48939 -16.48589 -15.86157 -15.80760 -15.75730 -15.66401 -15.35355 -14.78003 -14.38917 -14.34598 -14.20293 -14.17166 -14.00097 -13.89966 -13.70909 -13.43499 -13.07078 -13.00562 -12.56625 -12.49677 -12.39798 -11.92461 -11.32964 -10.98127 -10.53281 -10.50832 -10.33019 -9.85120 -8.78707 -8.50971 -6.23245 -0.70933 0.25328 0.59823 0.68590 1.35180 1.38810 1.55000 1.55466 1.95859 2.28797 2.67656 2.74849 2.91545 3.05020 3.23247 3.24379 3.55949 3.61494 4.06017 4.12525 4.14353 4.26628 4.46700 4.52280 4.66308 4.71501 4.75767 4.84539 4.95364 5.11093 5.16270 5.26291 5.34733 5.47465 5.64385 5.68936 5.77415 5.86626 6.16861 6.37611 6.82342 6.93914 7.53220 8.60024 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.046335 B = 0.003110 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.143642 B = 9001.425498 C = 9586.101941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.022 3.978 3 C -0.171 4.171 4 C 0.216 3.784 5 C -0.147 4.147 6 C -0.031 4.031 7 C -0.192 4.192 8 C 0.140 3.860 9 O -0.233 6.233 10 C -0.402 4.402 11 H 0.083 0.917 12 C 0.011 3.989 13 N -0.920 5.920 14 Si 0.972 3.028 15 H -0.265 1.265 16 H -0.270 1.270 17 H -0.257 1.257 18 C -0.247 4.247 19 C -0.028 4.028 20 N -0.517 5.517 21 C 0.169 3.831 22 C -0.116 4.116 23 C 0.289 3.711 24 N -0.456 5.456 25 H 0.098 0.902 26 H 0.065 0.935 27 H 0.105 0.895 28 H 0.176 0.824 29 H 0.175 0.825 30 H 0.144 0.856 31 H 0.286 0.714 32 H 0.110 0.890 33 H 0.132 0.868 34 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.172 -9.536 -0.706 21.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.013 3.987 3 C -0.191 4.191 4 C 0.083 3.917 5 C -0.148 4.148 6 C -0.049 4.049 7 C -0.211 4.211 8 C 0.089 3.911 9 O -0.139 6.139 10 C -0.478 4.478 11 H 0.100 0.900 12 C -0.188 4.188 13 N -0.560 5.560 14 Si 0.794 3.206 15 H -0.190 1.190 16 H -0.195 1.195 17 H -0.181 1.181 18 C -0.266 4.266 19 C -0.047 4.047 20 N -0.226 5.226 21 C 0.007 3.993 22 C -0.122 4.122 23 C -0.026 4.026 24 N -0.132 5.132 25 H 0.116 0.884 26 H 0.084 0.916 27 H 0.123 0.877 28 H 0.194 0.806 29 H 0.192 0.808 30 H 0.162 0.838 31 H 0.096 0.904 32 H 0.128 0.872 33 H 0.150 0.850 34 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -18.970 -10.725 -0.702 21.804 hybrid contribution 0.391 0.692 0.038 0.796 sum -18.579 -10.034 -0.664 21.126 Atomic orbital electron populations 1.21043 0.87588 1.04771 1.04636 1.20509 0.97990 0.90387 0.89854 1.22103 0.92907 1.00118 1.03949 1.19996 0.91063 0.90642 0.90048 1.18366 0.92357 0.91436 1.12663 1.21222 1.00967 0.88943 0.93774 1.20505 0.89395 1.00522 1.10696 1.19913 0.92735 0.85397 0.93014 1.83486 1.20075 1.28815 1.81494 1.20741 0.78499 0.96437 1.52120 0.89990 1.25341 0.95238 1.03082 0.95153 1.69721 1.05336 1.32105 1.48793 0.85192 0.78837 0.77032 0.79546 1.18957 1.19479 1.18083 1.21231 1.00491 0.92820 1.12104 1.21082 0.93858 0.96863 0.92910 1.67743 1.40964 0.98218 1.15677 1.23164 0.89643 0.96654 0.89854 1.16984 0.93899 0.87129 1.14169 1.25347 0.92567 0.92231 0.92448 1.81296 1.09460 1.11769 1.10713 0.88405 0.91603 0.87659 0.80644 0.80823 0.83847 0.90435 0.87222 0.85045 0.79965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.67 71.24 0.69 -0.36 16 2 C 0.02 0.31 5.95 -19.43 -0.12 0.19 16 3 C -0.17 -2.68 9.14 22.54 0.21 -2.47 16 4 C 0.22 5.02 6.73 41.93 0.28 5.31 16 5 C -0.15 -4.16 5.88 -20.02 -0.12 -4.28 16 6 C -0.03 -0.77 9.41 22.48 0.21 -0.56 16 7 C -0.19 -6.29 9.98 22.36 0.22 -6.07 16 8 C 0.14 6.06 6.65 22.66 0.15 6.21 16 9 O -0.23 -11.86 8.58 -21.46 -0.18 -12.05 16 10 C -0.40 -22.78 9.94 67.92 0.68 -22.10 16 11 H 0.08 4.91 5.42 -2.91 -0.02 4.90 16 12 C 0.01 0.62 5.49 84.84 0.47 1.08 16 13 N -0.92 -53.61 13.96 21.62 0.30 -53.31 16 14 Si 0.97 43.29 28.62 68.60 1.96 45.25 16 15 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 16 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 17 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 18 C -0.25 -10.44 9.15 22.36 0.20 -10.24 16 19 C -0.03 -0.98 9.56 22.48 0.21 -0.77 16 20 N -0.52 -12.52 9.39 -183.80 -1.73 -14.25 16 21 C 0.17 3.13 10.91 85.11 0.93 4.06 16 22 C -0.12 -1.93 5.75 -21.19 -0.12 -2.05 16 23 C 0.29 5.37 13.96 88.33 1.23 6.60 16 24 N -0.46 -10.42 18.54 19.00 0.35 -10.07 16 25 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 0.67 7.19 -2.39 -0.02 0.65 16 27 H 0.10 0.47 8.10 -2.39 -0.02 0.45 16 28 H 0.18 1.63 6.16 -2.91 -0.02 1.61 16 29 H 0.17 2.52 6.16 -2.91 -0.02 2.50 16 30 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 31 H 0.29 15.26 8.31 -92.71 -0.77 14.49 16 32 H 0.11 5.17 5.62 -2.91 -0.02 5.16 16 33 H 0.13 4.33 7.52 -2.91 -0.02 4.31 16 34 H 0.18 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -67.41 307.32 6.99 -60.42 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 1.16 Total: 9.46 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: 5.13 Total: -25.45 kcal Atomic # 7 Polarization: -76.55 SS G_CDS: -1.07 Total: -77.63 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -0.18 Total: -12.05 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.96 Total: 45.25 kcal Total: -67.41 6.99 -60.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587419.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.907 kcal (2) G-P(sol) polarization free energy of solvation -67.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds