Wall clock time and date at job start Tue Mar 31 2020 01:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38034 * 120.38823 * 2 1 4 4 C 1.40228 * 118.38378 * 180.28013 * 3 2 1 5 5 C 1.43202 * 120.46447 * 179.75315 * 4 3 2 6 6 N 4.80029 * 136.43275 * 359.72108 * 2 1 3 7 7 C 1.39745 * 119.08085 * 359.73114 * 4 3 2 8 8 N 1.31493 * 120.67959 * 359.97438 * 7 4 3 9 9 C 1.32840 * 121.76671 * 0.02562 * 8 7 4 10 10 C 1.48105 * 119.56644 * 179.97438 * 9 8 7 11 11 C 1.39553 * 120.05629 * 145.27467 * 10 9 8 12 12 C 1.37779 * 119.93544 * 180.23529 * 11 10 9 13 13 C 1.39045 * 120.06133 * 359.47194 * 12 11 10 14 14 O 1.35649 * 119.94227 * 180.27998 * 13 12 11 15 15 C 1.34814 * 116.99723 * 354.44749 * 14 13 12 16 16 H 1.08000 * 119.99647 * 5.05953 * 15 14 13 17 17 C 1.38670 * 119.99899 * 185.05670 * 15 14 13 18 18 N 1.31543 * 120.00147 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 120.00279 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47224 * 89.99473 * 19 17 15 21 21 H 1.48497 * 109.47061 * 210.00016 * 19 17 15 22 22 H 1.48506 * 109.46815 * 329.99878 * 19 17 15 23 23 C 1.39052 * 120.11937 * 0.30024 * 13 12 11 24 24 C 1.37768 * 120.06339 * 359.95186 * 23 13 12 25 25 H 1.08995 * 109.46854 * 270.27822 * 1 2 3 26 26 H 1.09003 * 109.46846 * 30.27311 * 1 2 3 27 27 H 1.08994 * 109.46737 * 150.27327 * 1 2 3 28 28 H 1.07992 * 120.80603 * 0.02562 * 3 2 1 29 29 H 1.07998 * 119.66054 * 180.02562 * 7 4 3 30 30 H 1.08004 * 120.03455 * 359.97438 * 11 10 9 31 31 H 1.08000 * 119.96449 * 179.75275 * 12 11 10 32 32 H 0.96998 * 120.00130 * 180.02562 * 18 17 15 33 33 H 1.08000 * 119.97036 * 179.97438 * 23 13 12 34 34 H 1.08006 * 120.03396 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2053 1.1907 0.0000 4 6 3.6067 1.1417 -0.0060 5 6 4.3754 2.3498 -0.0116 6 7 4.9851 3.3083 -0.0161 7 6 4.2428 -0.1026 -0.0061 8 7 3.5413 -1.2148 0.0000 9 6 2.2129 -1.2037 0.0058 10 6 1.4714 -2.4858 0.0119 11 6 0.2652 -2.5923 0.7055 12 6 -0.4201 -3.7875 0.7135 13 6 0.0836 -4.8838 0.0224 14 8 -0.5960 -6.0578 0.0272 15 6 -1.6893 -6.1288 0.8127 16 1 -2.0350 -5.2506 1.3377 17 6 -2.3700 -7.3295 0.9467 18 7 -3.4371 -7.3987 1.7127 19 14 -1.7717 -8.8488 0.0392 20 1 -0.8061 -9.5868 0.8924 21 1 -2.9282 -9.7264 -0.2728 22 1 -1.1052 -8.4406 -1.2235 23 6 1.2829 -4.7791 -0.6735 24 6 1.9749 -3.5878 -0.6806 25 1 -0.3633 0.0050 1.0276 26 1 -0.3633 0.8876 -0.5181 27 1 -0.3632 -0.8924 -0.5096 28 1 1.6849 2.1370 0.0004 29 1 5.3217 -0.1513 -0.0103 30 1 -0.1287 -1.7398 1.2390 31 1 -1.3517 -3.8716 1.2535 32 1 -3.9130 -8.2387 1.8067 33 1 1.6721 -5.6323 -1.2092 34 1 2.9062 -3.5069 -1.2216 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243588690.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:18 Heat of formation + Delta-G solvation = 64.505438 kcal Electronic energy + Delta-G solvation = -19694.429373 eV Core-core repulsion = 16558.346633 eV Total energy + Delta-G solvation = -3136.082740 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.67171 -39.20482 -37.16476 -36.47775 -34.00678 -32.85369 -32.36883 -30.46801 -29.09228 -27.47015 -25.72814 -23.99759 -22.94489 -22.02505 -20.98451 -18.62426 -18.08566 -17.64808 -16.97501 -16.49529 -15.06811 -14.67220 -14.51676 -14.18830 -14.03878 -13.95400 -13.74006 -13.59902 -13.45998 -13.09748 -12.97929 -12.69418 -12.46073 -12.39461 -12.34049 -12.10933 -11.50447 -11.09260 -10.91699 -10.82582 -10.27853 -9.92244 -9.64142 -9.56543 -9.20163 -8.87998 -8.42504 -7.38476 -6.59563 -4.24185 0.30203 1.05847 1.94978 2.02724 2.41312 2.85893 3.12738 3.16986 3.30120 3.61011 3.71871 4.09827 4.15194 4.36847 4.53393 4.57467 4.67162 4.81250 4.94994 4.99209 5.33894 5.41794 5.48057 5.57678 5.62754 5.73732 5.88026 5.97465 6.02536 6.18967 6.35584 6.39147 6.62137 6.90223 7.00878 7.08410 7.22779 7.40416 7.62055 7.82429 7.85372 8.74226 9.34386 10.46796 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.045346 B = 0.003291 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.327476 B = 8507.140701 C = 8978.574422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.139 4.139 3 C -0.024 4.024 4 C -0.111 4.111 5 C 0.266 3.734 6 N -0.426 5.426 7 C 0.157 3.843 8 N -0.481 5.481 9 C 0.235 3.765 10 C -0.166 4.166 11 C -0.046 4.046 12 C -0.230 4.230 13 C 0.175 3.825 14 O -0.204 6.204 15 C -0.391 4.391 16 H 0.111 0.889 17 C 0.066 3.934 18 N -0.869 5.869 19 Si 0.906 3.094 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.258 1.258 23 C -0.200 4.200 24 C -0.026 4.026 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.141 0.859 29 H 0.162 0.838 30 H 0.124 0.876 31 H 0.138 0.862 32 H 0.283 0.717 33 H 0.122 0.878 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.796 11.634 -3.525 14.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.142 4.142 3 C -0.051 4.051 4 C -0.117 4.117 5 C -0.049 4.049 6 N -0.102 5.102 7 C -0.005 4.005 8 N -0.189 5.189 9 C 0.100 3.900 10 C -0.168 4.168 11 C -0.064 4.064 12 C -0.249 4.249 13 C 0.121 3.879 14 O -0.107 6.107 15 C -0.466 4.466 16 H 0.128 0.872 17 C -0.139 4.139 18 N -0.505 5.505 19 Si 0.731 3.269 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.182 1.182 23 C -0.220 4.220 24 C -0.045 4.045 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.107 0.893 28 H 0.159 0.841 29 H 0.179 0.821 30 H 0.142 0.858 31 H 0.156 0.844 32 H 0.093 0.907 33 H 0.140 0.860 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.990 11.927 -3.555 15.353 hybrid contribution -0.537 -0.132 -0.137 0.570 sum 8.453 11.796 -3.692 14.974 Atomic orbital electron populations 1.21108 0.89542 1.03982 1.02796 1.20747 0.98017 0.92357 1.03031 1.21378 0.91536 0.98798 0.93393 1.16975 0.92600 0.88892 1.13252 1.25474 0.93405 0.92725 0.93338 1.81257 1.08676 1.10551 1.09668 1.22865 1.00322 0.85669 0.91661 1.67921 1.07478 1.29577 1.13886 1.20073 0.88462 0.92586 0.88841 1.17904 0.97593 0.91986 1.09280 1.21145 0.92520 0.97053 0.95731 1.21186 1.03723 0.92898 1.07075 1.19314 0.90283 0.85918 0.92431 1.83544 1.37946 1.30416 1.58802 1.20848 1.01579 0.99637 1.24528 0.87215 1.24522 0.94874 0.98468 0.96052 1.69629 1.16960 1.28212 1.35701 0.86169 0.78613 0.81064 0.81067 1.19660 1.20587 1.18171 1.20177 0.95669 0.98822 1.07291 1.20708 0.97381 0.90629 0.95753 0.90382 0.91540 0.89294 0.84148 0.82051 0.85842 0.84419 0.90710 0.86041 0.86000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 8.14 36.01 0.29 -0.80 16 2 C -0.14 -1.51 5.87 -104.21 -0.61 -2.12 16 3 C -0.02 -0.22 9.57 -38.91 -0.37 -0.59 16 4 C -0.11 -1.09 5.75 -106.66 -0.61 -1.71 16 5 C 0.27 2.84 15.36 -22.47 -0.35 2.49 16 6 N -0.43 -5.40 18.54 41.84 0.78 -4.63 16 7 C 0.16 1.63 10.91 -17.13 -0.19 1.44 16 8 N -0.48 -6.29 9.93 -9.44 -0.09 -6.38 16 9 C 0.24 3.14 6.48 -82.89 -0.54 2.60 16 10 C -0.17 -2.55 5.35 -104.87 -0.56 -3.11 16 11 C -0.05 -0.71 7.54 -39.26 -0.30 -1.01 16 12 C -0.23 -4.37 9.15 -39.45 -0.36 -4.73 16 13 C 0.18 3.66 6.65 -38.98 -0.26 3.40 16 14 O -0.20 -4.96 8.58 0.40 0.00 -4.96 16 15 C -0.39 -10.19 9.94 30.89 0.31 -9.89 16 16 H 0.11 2.89 5.42 -52.49 -0.28 2.61 16 17 C 0.07 1.73 5.49 -17.52 -0.10 1.63 16 18 N -0.87 -23.61 13.96 55.48 0.77 -22.84 16 19 Si 0.91 20.33 28.62 -169.99 -4.86 15.46 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 23 C -0.20 -3.62 9.98 -39.45 -0.39 -4.02 16 24 C -0.03 -0.41 9.57 -39.26 -0.38 -0.79 16 25 H 0.08 0.66 7.05 -51.93 -0.37 0.29 16 26 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 27 H 0.09 0.97 5.85 -51.93 -0.30 0.66 16 28 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 29 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.12 1.59 5.20 -52.48 -0.27 1.31 16 31 H 0.14 2.74 5.62 -52.49 -0.30 2.44 16 32 H 0.28 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 34 H 0.12 1.74 7.95 -52.48 -0.42 1.32 16 LS Contribution 304.38 15.07 4.59 4.59 Total: -1.00 -28.20 304.38 -5.99 -34.19 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -2.76 Total: 1.75 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -4.41 Total: -17.18 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: 1.46 Total: -33.85 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: 0.00 Total: -4.96 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.86 Total: 15.46 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.20 -5.99 -34.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243588690.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.691 kcal (2) G-P(sol) polarization free energy of solvation -28.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds