Wall clock time and date at job start Tue Mar 31 2020 01:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38034 * 120.38823 * 2 1 4 4 C 1.40228 * 118.38378 * 180.28013 * 3 2 1 5 5 C 1.43202 * 120.46447 * 179.75315 * 4 3 2 6 6 N 4.80029 * 136.43275 * 359.72108 * 2 1 3 7 7 C 1.39745 * 119.08085 * 359.73114 * 4 3 2 8 8 N 1.31493 * 120.67959 * 359.97438 * 7 4 3 9 9 C 1.32840 * 121.76671 * 0.02562 * 8 7 4 10 10 C 1.48105 * 119.56644 * 179.97438 * 9 8 7 11 11 C 1.39553 * 120.05629 * 145.27467 * 10 9 8 12 12 C 1.37779 * 119.93544 * 180.23529 * 11 10 9 13 13 C 1.39045 * 120.06133 * 359.47194 * 12 11 10 14 14 O 1.35649 * 119.94227 * 180.27998 * 13 12 11 15 15 C 1.34814 * 116.99723 * 354.44749 * 14 13 12 16 16 H 1.08000 * 119.99647 * 5.05953 * 15 14 13 17 17 C 1.38670 * 119.99899 * 185.05670 * 15 14 13 18 18 N 1.31543 * 120.00147 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 120.00279 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47224 * 89.99473 * 19 17 15 21 21 H 1.48497 * 109.47061 * 210.00016 * 19 17 15 22 22 H 1.48506 * 109.46815 * 329.99878 * 19 17 15 23 23 C 1.39052 * 120.11937 * 0.30024 * 13 12 11 24 24 C 1.37768 * 120.06339 * 359.95186 * 23 13 12 25 25 H 1.08995 * 109.46854 * 270.27822 * 1 2 3 26 26 H 1.09003 * 109.46846 * 30.27311 * 1 2 3 27 27 H 1.08994 * 109.46737 * 150.27327 * 1 2 3 28 28 H 1.07992 * 120.80603 * 0.02562 * 3 2 1 29 29 H 1.07998 * 119.66054 * 180.02562 * 7 4 3 30 30 H 1.08004 * 120.03455 * 359.97438 * 11 10 9 31 31 H 1.08000 * 119.96449 * 179.75275 * 12 11 10 32 32 H 0.96998 * 120.00130 * 180.02562 * 18 17 15 33 33 H 1.08000 * 119.97036 * 179.97438 * 23 13 12 34 34 H 1.08006 * 120.03396 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2053 1.1907 0.0000 4 6 3.6067 1.1417 -0.0060 5 6 4.3754 2.3498 -0.0116 6 7 4.9851 3.3083 -0.0161 7 6 4.2428 -0.1026 -0.0061 8 7 3.5413 -1.2148 0.0000 9 6 2.2129 -1.2037 0.0058 10 6 1.4714 -2.4858 0.0119 11 6 0.2652 -2.5923 0.7055 12 6 -0.4201 -3.7875 0.7135 13 6 0.0836 -4.8838 0.0224 14 8 -0.5960 -6.0578 0.0272 15 6 -1.6893 -6.1288 0.8127 16 1 -2.0350 -5.2506 1.3377 17 6 -2.3700 -7.3295 0.9467 18 7 -3.4371 -7.3987 1.7127 19 14 -1.7717 -8.8488 0.0392 20 1 -0.8061 -9.5868 0.8924 21 1 -2.9282 -9.7264 -0.2728 22 1 -1.1052 -8.4406 -1.2235 23 6 1.2829 -4.7791 -0.6735 24 6 1.9749 -3.5878 -0.6806 25 1 -0.3633 0.0050 1.0276 26 1 -0.3633 0.8876 -0.5181 27 1 -0.3632 -0.8924 -0.5096 28 1 1.6849 2.1370 0.0004 29 1 5.3217 -0.1513 -0.0103 30 1 -0.1287 -1.7398 1.2390 31 1 -1.3517 -3.8716 1.2535 32 1 -3.9130 -8.2387 1.8067 33 1 1.6721 -5.6323 -1.2092 34 1 2.9062 -3.5069 -1.2216 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243588690.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:17 Heat of formation + Delta-G solvation = 49.186293 kcal Electronic energy + Delta-G solvation = -19695.093661 eV Core-core repulsion = 16558.346633 eV Total energy + Delta-G solvation = -3136.747028 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.67626 -40.68455 -38.46426 -37.58056 -34.93793 -34.47539 -33.62780 -31.85403 -30.37694 -28.35253 -27.41658 -25.17222 -23.91952 -23.34838 -22.35694 -19.82731 -19.52353 -19.14728 -17.99022 -17.66991 -16.55525 -15.93657 -15.74896 -15.66888 -15.53890 -15.01046 -14.80944 -14.61886 -14.41135 -14.34727 -14.11858 -13.97046 -13.88526 -13.51221 -13.33715 -13.26982 -12.96858 -12.55330 -12.46111 -12.20138 -11.87994 -11.26890 -10.96302 -10.74686 -10.54427 -10.05088 -9.80691 -8.82665 -8.49568 -6.20986 -0.65103 0.23783 0.59488 0.64512 1.35044 1.37928 1.54258 1.54742 1.92212 2.29203 2.68902 2.71627 2.89459 3.01887 3.16675 3.27832 3.68563 3.79951 3.90332 4.06667 4.18111 4.20004 4.52167 4.56670 4.67151 4.68756 4.84184 4.90665 4.97812 5.14876 5.23852 5.24580 5.35903 5.50459 5.64092 5.66500 5.79484 5.87112 6.17641 6.36598 6.84714 6.90235 7.57192 8.61139 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.045346 B = 0.003291 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.327476 B = 8507.140701 C = 8978.574422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.131 4.131 3 C -0.012 4.012 4 C -0.095 4.095 5 C 0.289 3.711 6 N -0.456 5.456 7 C 0.156 3.844 8 N -0.498 5.498 9 C 0.206 3.794 10 C -0.140 4.140 11 C -0.040 4.040 12 C -0.239 4.239 13 C 0.139 3.861 14 O -0.238 6.238 15 C -0.399 4.399 16 H 0.090 0.910 17 C 0.013 3.987 18 N -0.918 5.918 19 Si 0.966 3.034 20 H -0.267 1.267 21 H -0.269 1.269 22 H -0.261 1.261 23 C -0.198 4.198 24 C -0.027 4.027 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.070 0.930 28 H 0.173 0.827 29 H 0.187 0.813 30 H 0.155 0.845 31 H 0.120 0.880 32 H 0.285 0.715 33 H 0.131 0.869 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.021 14.489 -4.374 18.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.133 4.133 3 C -0.039 4.039 4 C -0.101 4.101 5 C -0.026 4.026 6 N -0.132 5.132 7 C -0.006 4.006 8 N -0.206 5.206 9 C 0.072 3.928 10 C -0.142 4.142 11 C -0.058 4.058 12 C -0.258 4.258 13 C 0.089 3.911 14 O -0.144 6.144 15 C -0.475 4.475 16 H 0.107 0.893 17 C -0.186 4.186 18 N -0.558 5.558 19 Si 0.788 3.212 20 H -0.192 1.192 21 H -0.194 1.194 22 H -0.185 1.185 23 C -0.217 4.217 24 C -0.046 4.046 25 H 0.109 0.891 26 H 0.111 0.889 27 H 0.089 0.911 28 H 0.191 0.809 29 H 0.204 0.796 30 H 0.172 0.828 31 H 0.138 0.862 32 H 0.095 0.905 33 H 0.149 0.851 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 11.257 14.827 -4.417 19.133 hybrid contribution -0.858 -0.445 0.073 0.969 sum 10.399 14.382 -4.344 18.272 Atomic orbital electron populations 1.21169 0.88489 1.04452 1.03721 1.20851 0.98728 0.91861 1.01896 1.21700 0.91221 0.99527 0.91422 1.17004 0.92877 0.88324 1.11852 1.25372 0.92609 0.92243 0.92375 1.81311 1.09670 1.11643 1.10594 1.23231 1.01386 0.85073 0.90894 1.67840 1.07429 1.31038 1.14289 1.19896 0.88982 0.92251 0.91690 1.18252 0.96755 0.92886 1.06261 1.21404 0.92378 0.96582 0.95445 1.21223 1.03598 0.93962 1.07039 1.19819 0.91502 0.85717 0.94069 1.83502 1.38371 1.32126 1.60391 1.20767 1.02516 0.99231 1.24968 0.89304 1.25245 0.95172 1.01089 0.97077 1.69708 1.18739 1.29027 1.38322 0.85280 0.78327 0.77914 0.79642 1.19249 1.19395 1.18528 1.20413 0.94659 1.00158 1.06512 1.20998 0.97898 0.89998 0.95700 0.89148 0.88874 0.91122 0.80940 0.79587 0.82751 0.86228 0.90515 0.85077 0.83730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 8.14 71.24 0.58 -1.21 16 2 C -0.13 -2.29 5.87 -19.60 -0.12 -2.40 16 3 C -0.01 -0.15 9.57 22.71 0.22 0.06 16 4 C -0.09 -1.42 5.75 -21.18 -0.12 -1.55 16 5 C 0.29 5.00 15.36 88.33 1.36 6.35 16 6 N -0.46 -10.12 18.54 19.00 0.35 -9.77 16 7 C 0.16 2.59 10.91 85.11 0.93 3.52 16 8 N -0.50 -11.24 9.93 -183.79 -1.83 -13.07 16 9 C 0.21 4.81 6.48 41.93 0.27 5.08 16 10 C -0.14 -4.00 5.35 -20.02 -0.11 -4.10 16 11 C -0.04 -1.19 7.54 22.48 0.17 -1.02 16 12 C -0.24 -9.38 9.15 22.35 0.20 -9.17 16 13 C 0.14 6.04 6.65 22.66 0.15 6.19 16 14 O -0.24 -12.14 8.58 -21.47 -0.18 -12.33 16 15 C -0.40 -22.15 9.94 67.92 0.68 -21.48 16 16 H 0.09 5.09 5.42 -2.91 -0.02 5.08 16 17 C 0.01 0.74 5.49 84.84 0.47 1.21 16 18 N -0.92 -52.63 13.96 21.62 0.30 -52.33 16 19 Si 0.97 43.56 28.62 68.60 1.96 45.53 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 21 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 23 C -0.20 -7.14 9.98 22.35 0.22 -6.92 16 24 C -0.03 -0.82 9.57 22.48 0.22 -0.61 16 25 H 0.09 1.15 7.05 -2.39 -0.02 1.13 16 26 H 0.09 0.92 8.09 -2.39 -0.02 0.90 16 27 H 0.07 1.34 5.85 -2.39 -0.01 1.33 16 28 H 0.17 1.28 8.06 -2.91 -0.02 1.25 16 29 H 0.19 2.08 8.06 -2.91 -0.02 2.06 16 30 H 0.16 3.61 5.20 -2.91 -0.02 3.60 16 31 H 0.12 5.11 5.62 -2.91 -0.02 5.09 16 32 H 0.29 15.04 8.31 -92.71 -0.77 14.27 16 33 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 34 H 0.14 3.73 7.95 -2.91 -0.02 3.71 16 Total: -1.00 -64.83 304.38 6.88 -57.95 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 1.16 Total: 10.05 kcal Atomic # 6 Polarization: -31.15 SS G_CDS: 5.11 Total: -26.04 kcal Atomic # 7 Polarization: -74.00 SS G_CDS: -1.17 Total: -75.17 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -0.18 Total: -12.33 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.96 Total: 45.53 kcal Total: -64.83 6.88 -57.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243588690.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.138 kcal (2) G-P(sol) polarization free energy of solvation -64.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds