Wall clock time and date at job start Tue Mar 31 2020 01:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31682 * 119.66637 * 2 1 4 4 C 1.32046 * 122.19959 * 179.97438 * 3 2 1 5 5 C 1.37970 * 121.24180 * 0.02562 * 4 3 2 6 6 C 1.39697 * 119.16370 * 359.97438 * 5 4 3 7 7 C 1.47988 * 120.98720 * 179.97438 * 6 5 4 8 8 C 1.39441 * 120.17881 * 64.99679 * 7 6 5 9 9 C 1.37941 * 119.93150 * 179.74638 * 8 7 6 10 10 C 1.38497 * 120.29487 * 0.27270 * 9 8 7 11 11 C 1.38086 * 120.35515 * 359.97438 * 10 9 8 12 12 C 1.38774 * 120.06206 * 359.97438 * 11 10 9 13 13 O 1.35611 * 120.14393 * 180.02562 * 12 11 10 14 14 C 1.34807 * 117.00401 * 354.40022 * 13 12 11 15 15 H 1.08000 * 119.99588 * 5.06534 * 14 13 12 16 16 C 1.38670 * 119.99978 * 185.06622 * 14 13 12 17 17 N 1.31541 * 120.00427 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99821 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47102 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47255 * 119.99702 * 18 16 14 21 21 H 1.48502 * 109.46992 * 240.00000 * 18 16 14 22 22 C 1.39486 * 119.66173 * 180.25510 * 2 1 3 23 23 C 1.43201 * 120.65280 * 0.02562 * 22 2 1 24 24 N 3.49182 * 80.41406 * 180.26027 * 2 1 3 25 25 H 1.09004 * 109.47120 * 90.00024 * 1 2 3 26 26 H 1.09005 * 109.47411 * 210.00326 * 1 2 3 27 27 H 1.09004 * 109.47169 * 330.00169 * 1 2 3 28 28 H 1.07994 * 119.37532 * 179.97438 * 4 3 2 29 29 H 1.08003 * 120.42086 * 179.97438 * 5 4 3 30 30 H 1.08001 * 120.03584 * 0.02562 * 8 7 6 31 31 H 1.08009 * 119.85258 * 180.25488 * 9 8 7 32 32 H 1.07994 * 119.81891 * 179.97438 * 10 9 8 33 33 H 1.08001 * 119.96508 * 180.02562 * 11 10 9 34 34 H 0.96999 * 120.00172 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1442 0.0000 4 6 3.4779 1.2026 0.0005 5 6 4.2449 0.0557 0.0005 6 6 3.6094 -1.1883 0.0006 7 6 4.3925 -2.4440 0.0000 8 6 5.1962 -2.7693 1.0921 9 6 5.9200 -3.9436 1.0884 10 6 5.8569 -4.7998 0.0017 11 6 5.0689 -4.4870 -1.0883 12 6 4.3338 -3.3100 -1.0998 13 8 3.5590 -3.0015 -2.1691 14 6 3.6352 -3.8207 -3.2370 15 1 4.2290 -4.7214 -3.1853 16 6 2.9514 -3.5069 -4.4018 17 7 2.2278 -2.4102 -4.4647 18 14 3.0565 -4.6425 -5.8813 19 1 3.9277 -5.8003 -5.5558 20 1 1.6972 -5.1279 -6.2303 21 1 3.6288 -3.9017 -7.0342 22 6 2.1973 -1.2121 -0.0054 23 6 1.4881 -2.4561 -0.0115 24 7 0.9255 -3.4430 -0.0156 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 3.9655 2.1662 0.0001 29 1 5.3231 0.1189 0.0005 30 1 5.2485 -2.1048 1.9418 31 1 6.5389 -4.1963 1.9368 32 1 6.4271 -5.7169 0.0068 33 1 5.0241 -5.1595 -1.9322 34 1 1.7497 -2.1906 -5.2796 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243589537.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:09 Heat of formation + Delta-G solvation = 41.266438 kcal Electronic energy + Delta-G solvation = -20956.316427 eV Core-core repulsion = 17819.225968 eV Total energy + Delta-G solvation = -3137.090459 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.60472 -40.49810 -38.16350 -37.58447 -34.82390 -34.30299 -33.64512 -31.11238 -30.34430 -28.86951 -27.41772 -25.62115 -24.16608 -23.11929 -21.85663 -19.94024 -19.86918 -18.83932 -17.79016 -17.23066 -16.44850 -16.38865 -15.77147 -15.68308 -15.52414 -15.27494 -15.06000 -14.47020 -14.25661 -14.19256 -14.13487 -13.90209 -13.62012 -13.36784 -13.30545 -13.08302 -12.79715 -12.56873 -12.47054 -12.37490 -12.17554 -11.34733 -10.86095 -10.68653 -10.58499 -9.91101 -9.69627 -9.01701 -8.51378 -6.17520 -0.37857 0.04350 0.54246 0.70531 1.28901 1.36571 1.45399 1.64772 2.01515 2.10889 2.72754 2.80304 3.00107 3.09927 3.33219 3.39774 3.47632 3.85413 4.12523 4.14515 4.22768 4.41582 4.49055 4.55570 4.56748 4.62469 4.66164 4.89176 5.01713 5.06655 5.08154 5.17544 5.21829 5.54356 5.57876 5.66878 5.70035 5.95237 6.15280 6.47783 6.90874 6.93348 7.70672 8.69720 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.012941 B = 0.007962 C = 0.005934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.227483 B = 3515.672521 C = 4717.821858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.175 3.825 3 N -0.499 5.499 4 C 0.137 3.863 5 C -0.170 4.170 6 C 0.069 3.931 7 C -0.171 4.171 8 C -0.046 4.046 9 C -0.193 4.193 10 C -0.061 4.061 11 C -0.256 4.256 12 C 0.135 3.865 13 O -0.205 6.205 14 C -0.414 4.414 15 H 0.096 0.904 16 C -0.013 4.013 17 N -0.905 5.905 18 Si 1.008 2.992 19 H -0.254 1.254 20 H -0.274 1.274 21 H -0.264 1.264 22 C -0.096 4.096 23 C 0.285 3.715 24 N -0.460 5.460 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.111 0.889 28 H 0.208 0.792 29 H 0.171 0.829 30 H 0.156 0.844 31 H 0.157 0.843 32 H 0.145 0.855 33 H 0.115 0.885 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.152 5.292 10.147 12.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.034 3.966 3 N -0.209 5.209 4 C -0.020 4.020 5 C -0.189 4.189 6 C 0.059 3.941 7 C -0.172 4.172 8 C -0.064 4.064 9 C -0.211 4.211 10 C -0.079 4.079 11 C -0.275 4.275 12 C 0.083 3.917 13 O -0.110 6.110 14 C -0.490 4.490 15 H 0.113 0.887 16 C -0.212 4.212 17 N -0.542 5.542 18 Si 0.828 3.172 19 H -0.177 1.177 20 H -0.199 1.199 21 H -0.189 1.189 22 C -0.101 4.101 23 C -0.029 4.029 24 N -0.136 5.136 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.129 0.871 28 H 0.225 0.775 29 H 0.188 0.812 30 H 0.174 0.826 31 H 0.175 0.825 32 H 0.162 0.838 33 H 0.133 0.867 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.506 4.833 9.947 11.942 hybrid contribution 0.477 -1.337 -1.276 1.908 sum 4.983 3.496 8.672 10.595 Atomic orbital electron populations 1.20835 0.87249 1.04500 1.03782 1.21499 0.97870 0.86166 0.91038 1.67612 1.11370 1.26902 1.15010 1.23534 0.88410 1.00071 0.89942 1.22490 1.03212 0.90495 1.02752 1.19212 0.90141 0.94501 0.90212 1.18105 1.06887 0.95718 0.96480 1.21201 0.92570 0.97206 0.95391 1.21137 1.04320 0.95579 1.00087 1.21303 0.95274 0.99435 0.91887 1.21283 1.05008 0.98886 1.02345 1.19885 0.90097 0.93177 0.88549 1.83917 1.55505 1.50117 1.21426 1.21752 1.32526 1.04724 0.90012 0.88693 1.26383 0.95185 0.98721 1.00917 1.70162 1.29725 1.25351 1.29012 0.84680 0.78701 0.77566 0.76285 1.17738 1.19920 1.18880 1.17225 0.92935 0.88082 1.11885 1.25513 0.92382 0.92758 0.92280 1.81051 1.10883 1.11084 1.10580 0.90202 0.91363 0.87060 0.77513 0.81158 0.82600 0.82503 0.83773 0.86679 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.12 9.77 71.24 0.70 -2.42 16 2 C 0.17 6.03 6.82 42.88 0.29 6.33 16 3 N -0.50 -15.30 10.24 -183.10 -1.88 -17.17 16 4 C 0.14 3.45 11.16 84.60 0.94 4.39 16 5 C -0.17 -4.82 9.84 22.56 0.22 -4.60 16 6 C 0.07 2.59 4.99 -19.60 -0.10 2.50 16 7 C -0.17 -6.76 4.79 -19.95 -0.10 -6.85 16 8 C -0.05 -1.40 9.75 22.49 0.22 -1.18 16 9 C -0.19 -5.45 10.03 22.26 0.22 -5.23 16 10 C -0.06 -2.00 10.03 22.30 0.22 -1.78 16 11 C -0.26 -11.05 9.16 22.36 0.20 -10.84 16 12 C 0.14 6.49 6.12 22.85 0.14 6.63 16 13 O -0.20 -11.78 8.36 -20.97 -0.18 -11.95 16 14 C -0.41 -23.94 9.49 67.92 0.64 -23.29 16 15 H 0.10 5.16 5.21 -2.91 -0.02 5.15 16 16 C -0.01 -0.73 5.49 84.84 0.47 -0.27 16 17 N -0.91 -54.83 13.67 21.62 0.30 -54.53 16 18 Si 1.01 43.58 29.55 68.60 2.03 45.61 16 19 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 22 C -0.10 -3.83 5.60 -21.00 -0.12 -3.95 16 23 C 0.29 13.03 11.90 88.33 1.05 14.08 16 24 N -0.46 -22.57 18.54 19.00 0.35 -22.22 16 25 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.07 2.01 7.09 -2.38 -0.02 1.99 16 27 H 0.11 2.54 8.14 -2.38 -0.02 2.52 16 28 H 0.21 3.13 8.06 -2.91 -0.02 3.11 16 29 H 0.17 3.72 8.06 -2.91 -0.02 3.69 16 30 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 31 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 32 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 33 H 0.12 5.18 5.64 -2.91 -0.02 5.16 16 34 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -75.41 309.44 6.79 -68.63 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 1.15 Total: 18.11 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: 5.02 Total: -26.47 kcal Atomic # 7 Polarization: -92.69 SS G_CDS: -1.23 Total: -93.92 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -0.18 Total: -11.95 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -75.41 6.79 -68.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243589537.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.892 kcal (2) G-P(sol) polarization free energy of solvation -75.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds