Wall clock time and date at job start Tue Mar 31 2020 01:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38118 * 120.39748 * 2 1 4 4 N 1.31737 * 121.04186 * 180.02562 * 3 2 1 5 5 C 1.32700 * 121.95027 * 0.03942 * 4 3 2 6 6 C 1.48262 * 119.66183 * 179.97438 * 5 4 3 7 7 C 1.39472 * 120.05316 * 179.70963 * 6 5 4 8 8 C 1.37816 * 119.94819 * 179.71687 * 7 6 5 9 9 C 1.39023 * 120.05019 * 0.57543 * 8 7 6 10 10 O 1.35671 * 119.94313 * 179.69933 * 9 8 7 11 11 C 1.34815 * 116.99827 * 174.42522 * 10 9 8 12 12 H 1.08000 * 119.99825 * 5.05813 * 11 10 9 13 13 C 1.38664 * 119.99915 * 185.05337 * 11 10 9 14 14 N 1.31544 * 120.00258 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99939 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46724 * 60.00358 * 15 13 11 17 17 H 1.48493 * 109.47222 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47235 * 300.00859 * 15 13 11 19 19 C 1.39017 * 120.10904 * 359.67412 * 9 8 7 20 20 C 1.37822 * 120.05207 * 0.04746 * 19 9 8 21 21 C 1.39230 * 120.67239 * 359.95800 * 5 4 3 22 22 C 1.39724 * 118.89058 * 0.02562 * 21 5 4 23 23 C 1.43195 * 120.88050 * 180.02562 * 22 21 5 24 24 N 3.49972 * 81.36106 * 179.97438 * 2 1 3 25 25 H 1.09007 * 109.47077 * 269.98527 * 1 2 3 26 26 H 1.09006 * 109.47172 * 29.97815 * 1 2 3 27 27 H 1.08991 * 109.47333 * 149.98033 * 1 2 3 28 28 H 1.07991 * 119.47818 * 0.02562 * 3 2 1 29 29 H 1.08005 * 120.02491 * 359.96943 * 7 6 5 30 30 H 1.07999 * 119.97488 * 180.24576 * 8 7 6 31 31 H 0.96997 * 120.00485 * 180.02562 * 14 13 11 32 32 H 1.08002 * 119.97535 * 180.02562 * 19 9 8 33 33 H 1.08003 * 120.02051 * 180.02562 * 20 19 9 34 34 H 1.07999 * 120.55599 * 180.29908 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1913 0.0000 4 7 3.5231 1.2061 -0.0005 5 6 4.2380 0.0881 -0.0018 6 6 5.7187 0.1640 -0.0029 7 6 6.4780 -1.0059 0.0018 8 6 7.8542 -0.9329 -0.0051 9 6 8.4857 0.3057 -0.0047 10 8 9.8406 0.3750 -0.0054 11 6 10.3907 1.6003 -0.1216 12 1 9.7600 2.4770 -0.1266 13 6 11.7661 1.7349 -0.2348 14 7 12.5342 0.6670 -0.2292 15 14 12.5283 3.4327 -0.3966 16 1 12.1854 4.2451 0.7983 17 1 14.0039 3.3049 -0.5021 18 1 12.0011 4.0979 -1.6152 19 6 7.7310 1.4732 -0.0042 20 6 6.3545 1.4053 -0.0030 21 6 3.6117 -1.1553 -0.0018 22 6 2.2154 -1.2080 -0.0010 23 6 1.5273 -2.4637 -0.0004 24 7 0.9813 -3.4600 0.0015 25 1 -0.3633 -0.0003 1.0277 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3633 -0.8897 -0.5141 28 1 1.6639 2.1254 0.0004 29 1 5.9879 -1.9683 0.0068 30 1 8.4426 -1.8385 -0.0054 31 1 13.4964 0.7612 -0.3080 32 1 8.2238 2.4342 -0.0043 33 1 5.7687 2.3126 -0.0031 34 1 4.1953 -2.0641 0.0020 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243589963.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:15 Heat of formation + Delta-G solvation = 58.371028 kcal Electronic energy + Delta-G solvation = -19431.709199 eV Core-core repulsion = 16295.360450 eV Total energy + Delta-G solvation = -3136.348748 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.55326 -39.03678 -37.07650 -36.49938 -33.78196 -32.62450 -32.27441 -30.33332 -29.59145 -26.70889 -25.42032 -24.91097 -22.79458 -21.76671 -21.22668 -18.73816 -18.15519 -17.08798 -16.78386 -15.58455 -15.30418 -14.90736 -14.61940 -14.48417 -14.17529 -13.82090 -13.61455 -13.47954 -13.29759 -13.17400 -13.09257 -12.85527 -12.63851 -12.53752 -11.85731 -11.80065 -11.46877 -11.13279 -11.00764 -10.76876 -10.55174 -9.85874 -9.65472 -9.39198 -9.30657 -8.80336 -8.33641 -7.17156 -6.62113 -4.17591 0.46306 0.81437 2.13472 2.20043 2.35512 2.91150 3.05998 3.07868 3.09999 3.51907 3.78781 3.84809 4.20720 4.54431 4.54524 4.59126 4.78399 4.95292 5.07223 5.22424 5.26814 5.28988 5.42602 5.56786 5.63376 5.74138 5.78380 5.91409 6.07595 6.28924 6.41677 6.54335 6.79489 6.90935 7.09415 7.16017 7.22374 7.28973 7.64157 7.83176 7.96285 8.82690 9.49366 10.54530 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.038589 B = 0.003159 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.422014 B = 8862.291947 C = 9566.302559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.127 4.127 3 C 0.119 3.881 4 N -0.471 5.471 5 C 0.214 3.786 6 C -0.173 4.173 7 C -0.047 4.047 8 C -0.196 4.196 9 C 0.167 3.833 10 O -0.164 6.164 11 C -0.392 4.392 12 H 0.097 0.903 13 C 0.042 3.958 14 N -0.854 5.854 15 Si 0.944 3.056 16 H -0.268 1.268 17 H -0.277 1.277 18 H -0.268 1.268 19 C -0.244 4.244 20 C -0.018 4.018 21 C -0.134 4.134 22 C 0.020 3.980 23 C 0.261 3.739 24 N -0.410 5.410 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.162 0.838 29 H 0.116 0.884 30 H 0.122 0.878 31 H 0.274 0.726 32 H 0.131 0.869 33 H 0.123 0.877 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.115 1.558 0.255 17.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.132 4.132 3 C -0.040 4.040 4 N -0.180 5.180 5 C 0.080 3.920 6 C -0.175 4.175 7 C -0.066 4.066 8 C -0.216 4.216 9 C 0.111 3.889 10 O -0.065 6.065 11 C -0.468 4.468 12 H 0.114 0.886 13 C -0.165 4.165 14 N -0.487 5.487 15 Si 0.768 3.232 16 H -0.193 1.193 17 H -0.201 1.201 18 H -0.192 1.192 19 C -0.263 4.263 20 C -0.037 4.037 21 C -0.157 4.157 22 C 0.010 3.990 23 C -0.055 4.055 24 N -0.085 5.085 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.179 0.821 29 H 0.134 0.866 30 H 0.140 0.860 31 H 0.084 0.916 32 H 0.149 0.851 33 H 0.141 0.859 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -17.039 0.583 0.260 17.050 hybrid contribution 0.161 0.386 -0.071 0.424 sum -16.878 0.968 0.189 16.906 Atomic orbital electron populations 1.20744 0.89967 1.03274 1.02877 1.20833 0.97309 0.92537 1.02527 1.22578 0.89555 0.96874 0.95015 1.67644 1.07525 1.31104 1.11738 1.19770 0.93769 0.87002 0.91449 1.17839 0.87965 0.94205 1.17459 1.20670 0.92803 0.96489 0.96660 1.20103 0.93564 0.95895 1.11990 1.19552 0.84652 0.93467 0.91273 1.83938 1.14103 1.32526 1.75922 1.21420 0.91012 0.82343 1.52008 0.88571 1.25376 0.95137 0.99879 0.96060 1.70017 1.05563 1.28998 1.44098 0.85725 0.78215 0.79816 0.79444 1.19254 1.20142 1.19247 1.21152 0.93750 0.98868 1.12565 1.20879 0.93451 0.96568 0.92808 1.22142 0.92239 1.00187 1.01096 1.16023 0.92329 0.86647 1.04038 1.25501 0.93331 0.92683 0.93990 1.81256 1.08565 1.10684 1.08017 0.90573 0.90406 0.91792 0.82056 0.86570 0.85992 0.91597 0.85102 0.85907 0.83744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 9.66 36.01 0.35 -0.41 16 2 C -0.13 -1.21 5.94 -103.99 -0.62 -1.83 16 3 C 0.12 1.21 10.84 -17.64 -0.19 1.02 16 4 N -0.47 -6.41 9.40 -9.86 -0.09 -6.50 16 5 C 0.21 3.07 6.73 -83.00 -0.56 2.51 16 6 C -0.17 -2.88 5.88 -104.86 -0.62 -3.49 16 7 C -0.05 -0.77 9.41 -39.28 -0.37 -1.14 16 8 C -0.20 -3.83 9.98 -39.44 -0.39 -4.22 16 9 C 0.17 3.78 6.65 -39.00 -0.26 3.52 16 10 O -0.16 -4.41 9.75 0.33 0.00 -4.41 16 11 C -0.39 -10.36 9.48 30.89 0.29 -10.07 16 12 H 0.10 2.33 5.19 -52.49 -0.27 2.05 16 13 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 14 N -0.85 -23.87 13.67 55.48 0.76 -23.11 16 15 Si 0.94 19.45 29.55 -169.99 -5.02 14.42 16 16 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 17 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 18 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 19 C -0.24 -5.00 9.15 -39.44 -0.36 -5.36 16 20 C -0.02 -0.32 9.56 -39.28 -0.38 -0.70 16 21 C -0.13 -1.62 9.20 -38.66 -0.36 -1.98 16 22 C 0.02 0.22 5.75 -106.74 -0.61 -0.39 16 23 C 0.26 3.02 13.98 -22.47 -0.31 2.70 16 24 N -0.41 -5.40 18.54 41.84 0.78 -4.63 16 25 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 26 H 0.08 0.38 8.09 -51.93 -0.42 -0.04 16 27 H 0.06 0.48 7.17 -51.93 -0.37 0.10 16 28 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 29 H 0.12 1.51 6.17 -52.48 -0.32 1.18 16 30 H 0.12 2.27 8.06 -52.49 -0.42 1.84 16 31 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.13 2.66 5.62 -52.49 -0.30 2.37 16 33 H 0.12 2.00 7.53 -52.48 -0.40 1.61 16 34 H 0.14 1.54 6.18 -52.49 -0.32 1.22 16 LS Contribution 308.45 15.07 4.65 4.65 Total: -1.00 -29.51 308.45 -6.22 -35.73 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -2.81 Total: 2.70 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -4.48 Total: -18.85 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 1.44 Total: -34.24 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: 0.00 Total: -4.41 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.51 -6.22 -35.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243589963.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.098 kcal (2) G-P(sol) polarization free energy of solvation -29.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds