Wall clock time and date at job start Tue Mar 31 2020 01:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38118 * 120.39748 * 2 1 4 4 N 1.31737 * 121.04186 * 180.02562 * 3 2 1 5 5 C 1.32700 * 121.95027 * 0.03942 * 4 3 2 6 6 C 1.48262 * 119.66183 * 179.97438 * 5 4 3 7 7 C 1.39472 * 120.05316 * 179.70963 * 6 5 4 8 8 C 1.37816 * 119.94819 * 179.71687 * 7 6 5 9 9 C 1.39023 * 120.05019 * 0.57543 * 8 7 6 10 10 O 1.35671 * 119.94313 * 179.69933 * 9 8 7 11 11 C 1.34815 * 116.99827 * 174.42522 * 10 9 8 12 12 H 1.08000 * 119.99825 * 5.05813 * 11 10 9 13 13 C 1.38664 * 119.99915 * 185.05337 * 11 10 9 14 14 N 1.31544 * 120.00258 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99939 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46724 * 60.00358 * 15 13 11 17 17 H 1.48493 * 109.47222 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47235 * 300.00859 * 15 13 11 19 19 C 1.39017 * 120.10904 * 359.67412 * 9 8 7 20 20 C 1.37822 * 120.05207 * 0.04746 * 19 9 8 21 21 C 1.39230 * 120.67239 * 359.95800 * 5 4 3 22 22 C 1.39724 * 118.89058 * 0.02562 * 21 5 4 23 23 C 1.43195 * 120.88050 * 180.02562 * 22 21 5 24 24 N 3.49972 * 81.36106 * 179.97438 * 2 1 3 25 25 H 1.09007 * 109.47077 * 269.98527 * 1 2 3 26 26 H 1.09006 * 109.47172 * 29.97815 * 1 2 3 27 27 H 1.08991 * 109.47333 * 149.98033 * 1 2 3 28 28 H 1.07991 * 119.47818 * 0.02562 * 3 2 1 29 29 H 1.08005 * 120.02491 * 359.96943 * 7 6 5 30 30 H 1.07999 * 119.97488 * 180.24576 * 8 7 6 31 31 H 0.96997 * 120.00485 * 180.02562 * 14 13 11 32 32 H 1.08002 * 119.97535 * 180.02562 * 19 9 8 33 33 H 1.08003 * 120.02051 * 180.02562 * 20 19 9 34 34 H 1.07999 * 120.55599 * 180.29908 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1913 0.0000 4 7 3.5231 1.2061 -0.0005 5 6 4.2380 0.0881 -0.0018 6 6 5.7187 0.1640 -0.0029 7 6 6.4780 -1.0059 0.0018 8 6 7.8542 -0.9329 -0.0051 9 6 8.4857 0.3057 -0.0047 10 8 9.8406 0.3750 -0.0054 11 6 10.3907 1.6003 -0.1216 12 1 9.7600 2.4770 -0.1266 13 6 11.7661 1.7349 -0.2348 14 7 12.5342 0.6670 -0.2292 15 14 12.5283 3.4327 -0.3966 16 1 12.1854 4.2451 0.7983 17 1 14.0039 3.3049 -0.5021 18 1 12.0011 4.0979 -1.6152 19 6 7.7310 1.4732 -0.0042 20 6 6.3545 1.4053 -0.0030 21 6 3.6117 -1.1553 -0.0018 22 6 2.2154 -1.2080 -0.0010 23 6 1.5273 -2.4637 -0.0004 24 7 0.9813 -3.4600 0.0015 25 1 -0.3633 -0.0003 1.0277 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3633 -0.8897 -0.5141 28 1 1.6639 2.1254 0.0004 29 1 5.9879 -1.9683 0.0068 30 1 8.4426 -1.8385 -0.0054 31 1 13.4964 0.7612 -0.3080 32 1 8.2238 2.4342 -0.0043 33 1 5.7687 2.3126 -0.0031 34 1 4.1953 -2.0641 0.0020 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243589963.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:14 Heat of formation + Delta-G solvation = 41.548031 kcal Electronic energy + Delta-G solvation = -19432.438699 eV Core-core repulsion = 16295.360450 eV Total energy + Delta-G solvation = -3137.078248 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.58188 -40.61107 -38.36868 -37.73810 -34.80833 -34.24423 -33.44043 -31.83415 -30.81211 -27.94048 -27.05053 -25.91301 -23.91296 -23.21462 -22.51411 -19.97804 -19.73800 -18.76292 -17.80715 -16.77438 -16.39754 -16.16521 -16.04441 -15.81757 -15.53689 -15.28540 -14.93347 -14.50349 -14.45093 -14.19959 -14.17712 -13.97672 -13.83983 -13.53889 -13.25491 -12.96477 -12.88547 -12.50859 -12.50126 -12.24135 -12.13598 -11.22713 -10.87219 -10.79766 -10.51455 -10.13743 -9.82996 -8.67053 -8.48548 -6.15312 -0.50622 -0.17976 0.61644 0.86195 1.37707 1.43102 1.47988 1.53535 1.93766 2.18295 2.58165 2.67799 2.97598 3.20715 3.26439 3.45517 3.70774 3.77785 3.89698 4.14593 4.16252 4.30383 4.41098 4.55897 4.69705 4.73947 4.80014 4.81094 4.99697 5.09130 5.14595 5.17770 5.29447 5.45453 5.64830 5.70408 5.72488 6.01067 6.12321 6.24802 6.95848 6.97861 7.73443 8.73543 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.038589 B = 0.003159 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.422014 B = 8862.291947 C = 9566.302559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.095 4.095 3 C 0.117 3.883 4 N -0.485 5.485 5 C 0.182 3.818 6 C -0.145 4.145 7 C -0.040 4.040 8 C -0.204 4.204 9 C 0.130 3.870 10 O -0.222 6.222 11 C -0.416 4.416 12 H 0.105 0.895 13 C -0.019 4.019 14 N -0.917 5.917 15 Si 1.017 2.983 16 H -0.256 1.256 17 H -0.273 1.273 18 H -0.257 1.257 19 C -0.249 4.249 20 C -0.025 4.025 21 C -0.123 4.123 22 C 0.012 3.988 23 C 0.280 3.720 24 N -0.437 5.437 25 H 0.092 0.908 26 H 0.105 0.895 27 H 0.059 0.941 28 H 0.200 0.800 29 H 0.158 0.842 30 H 0.123 0.877 31 H 0.274 0.726 32 H 0.124 0.876 33 H 0.141 0.859 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.702 2.482 0.236 21.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.100 4.100 3 C -0.042 4.042 4 N -0.194 5.194 5 C 0.048 3.952 6 C -0.147 4.147 7 C -0.059 4.059 8 C -0.223 4.223 9 C 0.078 3.922 10 O -0.127 6.127 11 C -0.492 4.492 12 H 0.123 0.877 13 C -0.217 4.217 14 N -0.554 5.554 15 Si 0.836 3.164 16 H -0.180 1.180 17 H -0.197 1.197 18 H -0.181 1.181 19 C -0.268 4.268 20 C -0.044 4.044 21 C -0.146 4.146 22 C 0.001 3.999 23 C -0.035 4.035 24 N -0.113 5.113 25 H 0.110 0.890 26 H 0.123 0.877 27 H 0.078 0.922 28 H 0.216 0.784 29 H 0.175 0.825 30 H 0.141 0.859 31 H 0.083 0.917 32 H 0.142 0.858 33 H 0.159 0.841 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -21.703 1.500 0.244 21.756 hybrid contribution 0.810 -0.019 -0.047 0.812 sum -20.892 1.481 0.196 20.946 Atomic orbital electron populations 1.20897 0.87526 1.04504 1.04197 1.21259 0.98949 0.91645 0.98136 1.23186 0.88372 0.98615 0.94066 1.67562 1.09314 1.31156 1.11360 1.19433 0.92350 0.88278 0.95107 1.18227 0.89988 0.93576 1.12864 1.21057 0.91391 0.98487 0.94964 1.20377 0.95076 0.95019 1.11846 1.20092 0.83998 0.95381 0.92751 1.83920 1.16032 1.32793 1.79970 1.21850 0.91760 0.82905 1.52648 0.87739 1.26591 0.95350 1.04194 0.95612 1.70160 1.05702 1.31585 1.47923 0.84662 0.77153 0.74563 0.79983 1.18050 1.19709 1.18106 1.21228 0.94924 0.98034 1.12585 1.21065 0.92303 0.98133 0.92868 1.22191 0.92920 0.99791 0.99650 1.16061 0.91979 0.86973 1.04909 1.25422 0.92664 0.92339 0.93107 1.81299 1.09505 1.11427 1.09067 0.88997 0.87660 0.92183 0.78366 0.82454 0.85863 0.91682 0.85830 0.84110 0.82442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 9.66 71.24 0.69 -0.24 16 2 C -0.10 -1.33 5.94 -19.46 -0.12 -1.44 16 3 C 0.12 1.78 10.84 84.68 0.92 2.70 16 4 N -0.49 -11.29 9.40 -185.11 -1.74 -13.03 16 5 C 0.18 4.60 6.73 41.92 0.28 4.88 16 6 C -0.14 -4.53 5.88 -20.02 -0.12 -4.65 16 7 C -0.04 -1.26 9.41 22.47 0.21 -1.05 16 8 C -0.20 -8.13 9.98 22.36 0.22 -7.91 16 9 C 0.13 6.20 6.65 22.65 0.15 6.35 16 10 O -0.22 -12.90 9.75 -21.72 -0.21 -13.11 16 11 C -0.42 -23.50 9.48 67.92 0.64 -22.86 16 12 H 0.11 5.39 5.19 -2.91 -0.02 5.37 16 13 C -0.02 -1.06 5.49 84.84 0.47 -0.59 16 14 N -0.92 -54.94 13.67 21.61 0.30 -54.65 16 15 Si 1.02 41.62 29.55 68.60 2.03 43.65 16 16 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 17 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 18 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 19 C -0.25 -10.52 9.15 22.36 0.20 -10.32 16 20 C -0.03 -0.87 9.56 22.47 0.21 -0.66 16 21 C -0.12 -2.51 9.20 22.87 0.21 -2.30 16 22 C 0.01 0.21 5.75 -21.24 -0.12 0.08 16 23 C 0.28 5.50 13.98 88.33 1.23 6.73 16 24 N -0.44 -10.32 18.54 19.00 0.35 -9.97 16 25 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 26 H 0.10 0.37 8.09 -2.38 -0.02 0.35 16 27 H 0.06 0.61 7.17 -2.39 -0.02 0.59 16 28 H 0.20 1.53 8.06 -2.91 -0.02 1.51 16 29 H 0.16 3.55 6.17 -2.91 -0.02 3.53 16 30 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 31 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 32 H 0.12 5.30 5.62 -2.91 -0.02 5.28 16 33 H 0.14 4.36 7.53 -2.91 -0.02 4.34 16 34 H 0.16 2.71 6.18 -2.91 -0.02 2.69 16 Total: -1.00 -70.41 308.45 6.97 -63.43 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 1.16 Total: 14.94 kcal Atomic # 6 Polarization: -36.35 SS G_CDS: 5.09 Total: -31.26 kcal Atomic # 7 Polarization: -76.55 SS G_CDS: -1.09 Total: -77.64 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.21 Total: -13.11 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -70.41 6.97 -63.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243589963.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.981 kcal (2) G-P(sol) polarization free energy of solvation -70.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds